RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 STAP2Q9UGK3 403 aa10.01□□□□□ -0.81
VIM-202ENST00000421459 AKAP2Q9Y2D5 859 aa10.01□□□□□ -0.81
VIM-202ENST00000421459 SLC45A1Q9Y2W3 748 aa10.01□□□□□ -0.81
VIM-202ENST00000421459 PDS5AQ29RF7 1337 aaKnown RBP10.01□□□□□ -0.81
VIM-202ENST00000421459 AK9Q5TCS8 1911 aa10□□□□□ -0.81
VIM-202ENST00000421459 MYH13Q9UKX3 1938 aa10□□□□□ -0.81
VIM-202ENST00000421459 SOX1O00570 391 aaPredicted RBP10□□□□□ -0.81
VIM-202ENST00000421459 ZBTB22O15209 634 aa10□□□□□ -0.81
VIM-202ENST00000421459 GNAI3P08754 354 aa10□□□□□ -0.81
VIM-202ENST00000421459 TRIM27P14373 513 aa10□□□□□ -0.81
VIM-202ENST00000421459 CAP2P40123 477 aa10□□□□□ -0.81
VIM-202ENST00000421459 MTX1Q13505 466 aa10□□□□□ -0.81
VIM-202ENST00000421459 IRF5Q13568 498 aa10□□□□□ -0.81
VIM-202ENST00000421459 ADGRA1Q86SQ6 560 aa10□□□□□ -0.81
VIM-202ENST00000421459 TEX11Q8IYF3 940 aa10□□□□□ -0.81
VIM-202ENST00000421459 ZNF280CQ8ND82 737 aa10□□□□□ -0.81
VIM-202ENST00000421459 PXYLP1Q8TE99 480 aa10□□□□□ -0.81
VIM-202ENST00000421459 HTATIP2Q9BUP3 242 aa10□□□□□ -0.81
VIM-202ENST00000421459 ASCC2Q9H1I8 757 aaPredicted RBP10□□□□□ -0.81
VIM-202ENST00000421459 AATFQ9NY61 560 aaKnown RBP eCLIP10□□□□□ -0.81
VIM-202ENST00000421459 LRP2BPQ9P2M1 347 aa10□□□□□ -0.81
VIM-202ENST00000421459 GJD2Q9UKL4 321 aa10□□□□□ -0.81
VIM-202ENST00000421459 LAMA3Q16787 3333 aa10□□□□□ -0.81
VIM-202ENST00000421459 USP17L5A8MUK1 530 aa9.99□□□□□ -0.81
VIM-202ENST00000421459 EVI5O60447 810 aa9.99□□□□□ -0.81
VIM-202ENST00000421459 GNAI2P04899 355 aa9.99□□□□□ -0.81
VIM-202ENST00000421459 LDHCP07864 332 aa9.99□□□□□ -0.81
VIM-202ENST00000421459 CT47B1P0C2W7 299 aaPredicted RBP9.99□□□□□ -0.81
VIM-202ENST00000421459 ARID4AP29374 1257 aaPredicted RBP9.99□□□□□ -0.81
VIM-202ENST00000421459 G3BP1Q13283 466 aaKnown RBP eCLIP9.99□□□□□ -0.81
VIM-202ENST00000421459 MAPKAPK5Q8IW41 473 aa9.99□□□□□ -0.81
VIM-202ENST00000421459 TGFBRAP1Q8WUH2 860 aa9.99□□□□□ -0.81
VIM-202ENST00000421459 ARHGAP45Q92619 1136 aa9.99□□□□□ -0.81
VIM-202ENST00000421459 COA7Q96BR5 231 aa9.99□□□□□ -0.81
VIM-202ENST00000421459 LRCH3Q96II8 777 aa9.99□□□□□ -0.81
VIM-202ENST00000421459 C1orf115Q9H7X2 142 aa9.99□□□□□ -0.81
VIM-202ENST00000421459 DNAJC18Q9H819 358 aa9.99□□□□□ -0.81
VIM-202ENST00000421459 PAK6Q9NQU5 681 aaPredicted RBP9.99□□□□□ -0.81
VIM-202ENST00000421459 SAP30BPQ9UHR5 308 aaKnown RBP9.99□□□□□ -0.81
VIM-202ENST00000421459 HDAC5Q9UQL6 1122 aa9.99□□□□□ -0.81
VIM-202ENST00000421459 NR2E3Q9Y5X4 410 aa9.99□□□□□ -0.81
VIM-202ENST00000421459 MYH2Q9UKX2 1941 aa9.99□□□□□ -0.81
VIM-202ENST00000421459 COL6A3P12111 3177 aa9.99□□□□□ -0.81
VIM-202ENST00000421459 DOCK2Q92608 1830 aa9.98□□□□□ -0.81
VIM-202ENST00000421459 GDF11O95390 407 aa9.98□□□□□ -0.81
VIM-202ENST00000421459 CYP2B6P20813 491 aa9.98□□□□□ -0.81
VIM-202ENST00000421459 MNX1P50219 401 aaPredicted RBP9.98□□□□□ -0.81
VIM-202ENST00000421459 DYNLL1P63167 89 aaKnown RBP9.98□□□□□ -0.81
VIM-202ENST00000421459 GSTO1P78417 241 aa9.98□□□□□ -0.81
VIM-202ENST00000421459 MTMR2Q13614 643 aa9.98□□□□□ -0.81
VIM-202ENST00000421459 FAM110CQ1W6H9 321 aa9.98□□□□□ -0.81
VIM-202ENST00000421459 POTEEQ6S8J3 1075 aa9.98□□□□□ -0.81
VIM-202ENST00000421459 TMEM57Q8N5G2 664 aa9.98□□□□□ -0.81
VIM-202ENST00000421459 PROCA1Q8NCQ7 364 aaPredicted RBP9.98□□□□□ -0.81
VIM-202ENST00000421459 P2RX7Q99572 595 aaKnown RBP9.98□□□□□ -0.81
VIM-202ENST00000421459 DBNDD2Q9BQY9 259 aa9.98□□□□□ -0.81
VIM-202ENST00000421459 CRISPLD2Q9H0B8 497 aa9.98□□□□□ -0.81
VIM-202ENST00000421459 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.98□□□□□ -0.81
VIM-202ENST00000421459 TXNRD2Q9NNW7 524 aa9.98□□□□□ -0.81
VIM-202ENST00000421459 PALD1Q9ULE6 856 aa9.98□□□□□ -0.81
VIM-202ENST00000421459 ZMYND8Q9ULU4 1186 aaPredicted RBP9.98□□□□□ -0.81
VIM-202ENST00000421459 NDUFB9Q9Y6M9 179 aa9.98□□□□□ -0.81
VIM-202ENST00000421459 NPM3O75607 178 aaKnown RBP9.97□□□□□ -0.81
VIM-202ENST00000421459 CYP2E1P05181 493 aaPredicted RBP9.97□□□□□ -0.81
VIM-202ENST00000421459 SYN1P17600 705 aa9.97□□□□□ -0.81
VIM-202ENST00000421459 ZAP70P43403 619 aa9.97□□□□□ -0.81
VIM-202ENST00000421459 Q3C1V9 767 aa9.97□□□□□ -0.81
VIM-202ENST00000421459 SH3D19Q5HYK7 790 aa9.97□□□□□ -0.81
VIM-202ENST00000421459 TTC39AQ5SRH9 613 aa9.97□□□□□ -0.81
VIM-202ENST00000421459 NAA16Q6N069 864 aaPredicted RBP9.97□□□□□ -0.81
VIM-202ENST00000421459 ATF7IPQ6VMQ6 1270 aa9.97□□□□□ -0.81
VIM-202ENST00000421459 C7orf61Q8IZ16 206 aa9.97□□□□□ -0.81
VIM-202ENST00000421459 TRIB2Q92519 343 aa9.97□□□□□ -0.81
VIM-202ENST00000421459 PIH1D3Q9NQM4 214 aaKnown RBP9.97□□□□□ -0.81
VIM-202ENST00000421459 TLR7Q9NYK1 1049 aaKnown RBP9.97□□□□□ -0.81
VIM-202ENST00000421459 PNMA3Q9UL41 463 aa9.97□□□□□ -0.81
VIM-202ENST00000421459 PHIPQ8WWQ0 1821 aa9.97□□□□□ -0.81
VIM-202ENST00000421459 DOCK1Q14185 1865 aa9.96□□□□□ -0.81
VIM-202ENST00000421459 HMGCRP04035 888 aa9.96□□□□□ -0.82
VIM-202ENST00000421459 UQCRFS1P1P0C7P4 283 aa9.96□□□□□ -0.82
VIM-202ENST00000421459 GCLCP48506 637 aaPredicted RBP9.96□□□□□ -0.82
VIM-202ENST00000421459 TNNI3KQ59H18 835 aa9.96□□□□□ -0.82
VIM-202ENST00000421459 NECAB2Q7Z6G3 386 aa9.96□□□□□ -0.82
VIM-202ENST00000421459 CCDC8Q9H0W5 538 aaPredicted RBP9.96□□□□□ -0.82
VIM-202ENST00000421459 PI4KBQ9UBF8 816 aa9.96□□□□□ -0.82
VIM-202ENST00000421459 RBPJLQ9UBG7 517 aa9.96□□□□□ -0.82
VIM-202ENST00000421459 FPGT-TNNI3KV9GXZ4 949 aa9.96□□□□□ -0.82
VIM-202ENST00000421459 FLT1P17948 1338 aa9.96□□□□□ -0.82
VIM-202ENST00000421459 SURF6O75683 361 aaKnown RBP9.95□□□□□ -0.82
VIM-202ENST00000421459 BACE1P56817 501 aa9.95□□□□□ -0.82
VIM-202ENST00000421459 PPP4CP60510 307 aa9.95□□□□□ -0.82
VIM-202ENST00000421459 HERVK_113P62684 666 aa9.95□□□□□ -0.82
VIM-202ENST00000421459 IRX3P78415 501 aaPredicted RBP9.95□□□□□ -0.82
VIM-202ENST00000421459 POLA2Q14181 598 aa9.95□□□□□ -0.82
VIM-202ENST00000421459 ZYXQ15942 572 aaKnown RBP9.95□□□□□ -0.82
VIM-202ENST00000421459 CCL14Q16627 93 aa9.95□□□□□ -0.82
VIM-202ENST00000421459 MIGA1Q8NAN2 632 aa9.95□□□□□ -0.82
VIM-202ENST00000421459 NOL10Q9BSC4 688 aaKnown RBP9.95□□□□□ -0.82
VIM-202ENST00000421459 PAGR1Q9BTK6 254 aa9.95□□□□□ -0.82
VIM-202ENST00000421459 WDR18Q9BV38 432 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms