RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 FOXD4L3Q6VB84 417 aaPredicted RBP9.71□□□□□ -0.85
USP54-203ENST00000418501 CHST3Q7LGC8 479 aa9.71□□□□□ -0.85
USP54-203ENST00000418501 USP48Q86UV5 1035 aa9.71□□□□□ -0.85
USP54-203ENST00000418501 NIM1KQ8IY84 436 aa9.71□□□□□ -0.85
USP54-203ENST00000418501 CAMKK2Q96RR4 588 aa9.71□□□□□ -0.85
USP54-203ENST00000418501 MAP3K14Q99558 947 aa9.71□□□□□ -0.85
USP54-203ENST00000418501 RNF26Q9BY78 433 aaPredicted RBP9.71□□□□□ -0.85
USP54-203ENST00000418501 CABP5Q9NP86 173 aa9.71□□□□□ -0.85
USP54-203ENST00000418501 LMBRD1Q9NUN5 540 aa9.71□□□□□ -0.85
USP54-203ENST00000418501 TNKSO95271 1327 aa9.71□□□□□ -0.86
USP54-203ENST00000418501 CCDC192P0DO97 292 aa9.71□□□□□ -0.86
USP54-203ENST00000418501 PRDX5P30044 214 aa9.71□□□□□ -0.86
USP54-203ENST00000418501 DYNLL1P63167 89 aaKnown RBP9.71□□□□□ -0.86
USP54-203ENST00000418501 FANCBQ8NB91 859 aa9.71□□□□□ -0.86
USP54-203ENST00000418501 TGFBRAP1Q8WUH2 860 aa9.71□□□□□ -0.86
USP54-203ENST00000418501 NAT10Q9H0A0 1025 aaKnown RBP9.71□□□□□ -0.86
USP54-203ENST00000418501 FAM13BQ9NYF5 915 aa9.71□□□□□ -0.86
USP54-203ENST00000418501 PRKAB2O43741 272 aa9.7□□□□□ -0.86
USP54-203ENST00000418501 ME1P48163 572 aa9.7□□□□□ -0.86
USP54-203ENST00000418501 TGFB2P61812 414 aa9.7□□□□□ -0.86
USP54-203ENST00000418501 ZSCAN29Q8IWY8 852 aaPredicted RBP9.7□□□□□ -0.86
USP54-203ENST00000418501 NUP62CLQ9H1M0 184 aa9.7□□□□□ -0.86
USP54-203ENST00000418501 ZSWIM5Q9P217 1185 aa9.7□□□□□ -0.86
USP54-203ENST00000418501 ARAP2Q8WZ64 1704 aa9.7□□□□□ -0.86
USP54-203ENST00000418501 TNNI2P48788 182 aa9.7□□□□□ -0.86
USP54-203ENST00000418501 GALNT17Q6IS24 598 aa9.7□□□□□ -0.86
USP54-203ENST00000418501 FERMT3Q86UX7 667 aa9.7□□□□□ -0.86
USP54-203ENST00000418501 PROM2Q8N271 834 aa9.7□□□□□ -0.86
USP54-203ENST00000418501 LARGE2Q8N3Y3 721 aa9.7□□□□□ -0.86
USP54-203ENST00000418501 TUBGCP6Q96RT7 1819 aa9.7□□□□□ -0.86
USP54-203ENST00000418501 DDX60Q8IY21 1712 aaKnown RBP9.7□□□□□ -0.86
USP54-203ENST00000418501 FMNL1O95466 1100 aaPredicted RBP9.7□□□□□ -0.86
USP54-203ENST00000418501 CTR9Q6PD62 1173 aa9.7□□□□□ -0.86
USP54-203ENST00000418501 HOOK2Q96ED9 719 aa9.7□□□□□ -0.86
USP54-203ENST00000418501 GLT8D2Q9H1C3 349 aa9.7□□□□□ -0.86
USP54-203ENST00000418501 USP40Q9NVE5 1235 aa9.7□□□□□ -0.86
USP54-203ENST00000418501 YEATS4O95619 227 aa9.7□□□□□ -0.86
USP54-203ENST00000418501 RILPL1Q5EBL4 403 aa9.7□□□□□ -0.86
USP54-203ENST00000418501 EPB41L4AQ9HCS5 686 aaPredicted RBP9.7□□□□□ -0.86
USP54-203ENST00000418501 PIM2Q9P1W9 311 aa9.7□□□□□ -0.86
USP54-203ENST00000418501 hCG_1984214I3L0E3 225 aa9.69□□□□□ -0.86
USP54-203ENST00000418501 LARGE1O95461 756 aa9.69□□□□□ -0.86
USP54-203ENST00000418501 ZNF713Q8N859 430 aaPredicted RBP9.69□□□□□ -0.86
USP54-203ENST00000418501 FBXO18Q8NFZ0 1043 aa9.69□□□□□ -0.86
USP54-203ENST00000418501 DNM1Q05193 864 aaKnown RBP9.69□□□□□ -0.86
USP54-203ENST00000418501 TNIP1Q15025 636 aa9.69□□□□□ -0.86
USP54-203ENST00000418501 C12orf60Q5U649 245 aa9.69□□□□□ -0.86
USP54-203ENST00000418501 STK11IPQ8N1F8 1099 aa9.69□□□□□ -0.86
USP54-203ENST00000418501 TNMDQ9H2S6 317 aa9.69□□□□□ -0.86
USP54-203ENST00000418501 LY9Q9HBG7 655 aa9.69□□□□□ -0.86
USP54-203ENST00000418501 RTN4Q9NQC3 1192 aaKnown RBP9.69□□□□□ -0.86
USP54-203ENST00000418501 TCP11L1Q9NUJ3 509 aa9.69□□□□□ -0.86
USP54-203ENST00000418501 CNPY2Q9Y2B0 182 aa9.69□□□□□ -0.86
USP54-203ENST00000418501 TXLNAP40222 546 aa9.69□□□□□ -0.86
USP54-203ENST00000418501 TFAP4Q01664 338 aa9.69□□□□□ -0.86
USP54-203ENST00000418501 MAP3K11Q16584 847 aa9.69□□□□□ -0.86
USP54-203ENST00000418501 POTEAQ6S8J7 498 aa9.69□□□□□ -0.86
USP54-203ENST00000418501 NEDD4P46934 1319 aa9.69□□□□□ -0.86
USP54-203ENST00000418501 SBF2Q86WG5 1849 aa9.69□□□□□ -0.86
USP54-203ENST00000418501 TOP1P11387 765 aaKnown RBP9.68□□□□□ -0.86
USP54-203ENST00000418501 FOSBP53539 338 aa9.68□□□□□ -0.86
USP54-203ENST00000418501 ZNF445P59923 1031 aa9.68□□□□□ -0.86
USP54-203ENST00000418501 UVSSAQ2YD98 709 aa9.68□□□□□ -0.86
USP54-203ENST00000418501 SLFNL1Q499Z3 407 aa9.68□□□□□ -0.86
USP54-203ENST00000418501 MAPKAPK5Q8IW41 473 aa9.68□□□□□ -0.86
USP54-203ENST00000418501 IGDCC4Q8TDY8 1250 aa9.68□□□□□ -0.86
USP54-203ENST00000418501 POLLQ9UGP5 575 aa9.68□□□□□ -0.86
USP54-203ENST00000418501 JAK2O60674 1132 aa9.68□□□□□ -0.86
USP54-203ENST00000418501 DALRD3Q5D0E6 543 aaKnown RBP9.68□□□□□ -0.86
USP54-203ENST00000418501 SH2D4AQ9H788 454 aa9.68□□□□□ -0.86
USP54-203ENST00000418501 PARP1P09874 1014 aaKnown RBP9.68□□□□□ -0.86
USP54-203ENST00000418501 KRT2P35908 639 aa9.68□□□□□ -0.86
USP54-203ENST00000418501 FOXP4Q8IVH2 680 aaPredicted RBP9.68□□□□□ -0.86
USP54-203ENST00000418501 GRPEL1Q9HAV7 217 aa9.68□□□□□ -0.86
USP54-203ENST00000418501 STX8Q9UNK0 236 aa9.68□□□□□ -0.86
USP54-203ENST00000418501 ECE2O60344 883 aa9.68□□□□□ -0.86
USP54-203ENST00000418501 NLRP5P59047 1200 aa9.68□□□□□ -0.86
USP54-203ENST00000418501 MCTP2Q6DN12 878 aa9.68□□□□□ -0.86
USP54-203ENST00000418501 LRSAM1Q6UWE0 723 aa9.68□□□□□ -0.86
USP54-203ENST00000418501 CYB5R4Q7L1T6 521 aa9.68□□□□□ -0.86
USP54-203ENST00000418501 CDC37L1Q7L3B6 337 aa9.68□□□□□ -0.86
USP54-203ENST00000418501 NCOA5Q9HCD5 579 aaKnown RBP9.68□□□□□ -0.86
USP54-203ENST00000418501 ZNF219Q9P2Y4 722 aaPredicted RBP9.68□□□□□ -0.86
USP54-203ENST00000418501 JAG2Q9Y219 1238 aa9.68□□□□□ -0.86
USP54-203ENST00000418501 TAF1LQ8IZX4 1826 aa9.67□□□□□ -0.86
USP54-203ENST00000418501 PRPF3O43395 683 aaKnown RBP9.67□□□□□ -0.86
USP54-203ENST00000418501 NRDCO43847 1150 aa9.67□□□□□ -0.86
USP54-203ENST00000418501 PTMAP06454 111 aaKnown RBP9.67□□□□□ -0.86
USP54-203ENST00000418501 DHX8Q14562 1220 aaKnown RBP9.67□□□□□ -0.86
USP54-203ENST00000418501 DOK7Q18PE1 504 aa9.67□□□□□ -0.86
USP54-203ENST00000418501 KANK3Q6NY19 840 aa9.67□□□□□ -0.86
USP54-203ENST00000418501 CCDC47Q96A33 483 aaKnown RBP9.67□□□□□ -0.86
USP54-203ENST00000418501 RRP36Q96EU6 259 aaKnown RBP9.67□□□□□ -0.86
USP54-203ENST00000418501 NAP1L4Q99733 375 aaKnown RBP9.67□□□□□ -0.86
USP54-203ENST00000418501 SDF4Q9BRK5 362 aa9.67□□□□□ -0.86
USP54-203ENST00000418501 SERPINA10Q9UK55 444 aa9.67□□□□□ -0.86
USP54-203ENST00000418501 F8W031 263 aaPredicted RBP9.67□□□□□ -0.86
USP54-203ENST00000418501 FGRP09769 529 aa9.67□□□□□ -0.86
USP54-203ENST00000418501 GNA11P29992 359 aa9.67□□□□□ -0.86
USP54-203ENST00000418501 NASPP49321 788 aaPredicted RBP9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms