RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 JAG1P78504 1218 aa14.21□□□□□ -0.13
USP4-204ENST00000416417 SPP2Q13103 211 aa14.21□□□□□ -0.13
USP4-204ENST00000416417 MAPKAPK5Q8IW41 473 aa14.21□□□□□ -0.13
USP4-204ENST00000416417 BIN2Q9UBW5 565 aaPredicted RBP14.21□□□□□ -0.13
USP4-204ENST00000416417 KIAA0100Q14667 2235 aaKnown RBP14.21□□□□□ -0.13
USP4-204ENST00000416417 PHIPQ8WWQ0 1821 aa14.21□□□□□ -0.14
USP4-204ENST00000416417 ZBTB7BO15156 539 aaPredicted RBP14.2□□□□□ -0.14
USP4-204ENST00000416417 HOXD10P28358 340 aa14.2□□□□□ -0.14
USP4-204ENST00000416417 PRMT2P55345 433 aa14.2□□□□□ -0.14
USP4-204ENST00000416417 FCGRTP55899 365 aa14.2□□□□□ -0.14
USP4-204ENST00000416417 DYNLL1P63167 89 aaKnown RBP14.2□□□□□ -0.14
USP4-204ENST00000416417 CCDC158Q5M9N0 1113 aa14.2□□□□□ -0.14
USP4-204ENST00000416417 ANKRD13CQ8N6S4 541 aa14.2□□□□□ -0.14
USP4-204ENST00000416417 PANK1Q8TE04 598 aa14.2□□□□□ -0.14
USP4-204ENST00000416417 TGFBRAP1Q8WUH2 860 aa14.2□□□□□ -0.14
USP4-204ENST00000416417 SHISA4Q96DD7 197 aa14.2□□□□□ -0.14
USP4-204ENST00000416417 SAP30BPQ9UHR5 308 aaKnown RBP14.2□□□□□ -0.14
USP4-204ENST00000416417 DBNLQ9UJU6 430 aaKnown RBP14.2□□□□□ -0.14
USP4-204ENST00000416417 TBC1D12O60347 775 aa14.2□□□□□ -0.14
USP4-204ENST00000416417 CCL5P13501 91 aa14.2□□□□□ -0.14
USP4-204ENST00000416417 ELNP15502 786 aa14.2□□□□□ -0.14
USP4-204ENST00000416417 HMGCS2P54868 508 aa14.2□□□□□ -0.14
USP4-204ENST00000416417 DIEXFQ68CQ4 756 aaKnown RBP14.2□□□□□ -0.14
USP4-204ENST00000416417 SMCR8Q8TEV9 937 aaPredicted RBP14.2□□□□□ -0.14
USP4-204ENST00000416417 NOL10Q9BSC4 688 aaKnown RBP14.2□□□□□ -0.14
USP4-204ENST00000416417 GPR108Q9NPR9 543 aa14.2□□□□□ -0.14
USP4-204ENST00000416417 AGTPBP1Q9UPW5 1226 aa14.2□□□□□ -0.14
USP4-204ENST00000416417 PEX10O60683 326 aa14.19□□□□□ -0.14
USP4-204ENST00000416417 NPM3O75607 178 aaKnown RBP14.19□□□□□ -0.14
USP4-204ENST00000416417 CAP2P40123 477 aa14.19□□□□□ -0.14
USP4-204ENST00000416417 EAF2Q96CJ1 260 aaPredicted RBP14.19□□□□□ -0.14
USP4-204ENST00000416417 BCL11AQ9H165 835 aa14.19□□□□□ -0.14
USP4-204ENST00000416417 TAOK2Q9UL54 1235 aa14.19□□□□□ -0.14
USP4-204ENST00000416417 PALD1Q9ULE6 856 aa14.19□□□□□ -0.14
USP4-204ENST00000416417 EXOC6BQ9Y2D4 811 aa14.19□□□□□ -0.14
USP4-204ENST00000416417 FLT3LGP49771 235 aa14.18□□□□□ -0.14
USP4-204ENST00000416417 HABP4Q5JVS0 413 aaKnown RBP14.18□□□□□ -0.14
USP4-204ENST00000416417 MIGA1Q8NAN2 632 aa14.18□□□□□ -0.14
USP4-204ENST00000416417 ZNF280CQ8ND82 737 aa14.18□□□□□ -0.14
USP4-204ENST00000416417 RNF208Q9H0X6 261 aa14.18□□□□□ -0.14
USP4-204ENST00000416417 UNC93B1Q9H1C4 597 aa14.18□□□□□ -0.14
USP4-204ENST00000416417 DNAJC18Q9H819 358 aa14.18□□□□□ -0.14
USP4-204ENST00000416417 PTPRFP10586 1907 aa14.18□□□□□ -0.14
USP4-204ENST00000416417 FLT1P17948 1338 aa14.18□□□□□ -0.14
USP4-204ENST00000416417 TNPO2O14787 897 aaKnown RBP14.17□□□□□ -0.14
USP4-204ENST00000416417 ADCY3O60266 1144 aa14.17□□□□□ -0.14
USP4-204ENST00000416417 GDF11O95390 407 aa14.17□□□□□ -0.14
USP4-204ENST00000416417 CYP7A1P22680 504 aa14.17□□□□□ -0.14
USP4-204ENST00000416417 CEP85Q6P2H3 762 aa14.17□□□□□ -0.14
USP4-204ENST00000416417 ANTXR1Q9H6X2 564 aa14.17□□□□□ -0.14
USP4-204ENST00000416417 SLC45A1Q9Y2W3 748 aa14.17□□□□□ -0.14
USP4-204ENST00000416417 NOP58Q9Y2X3 529 aaKnown RBP14.17□□□□□ -0.14
USP4-204ENST00000416417 SIPA1L1O43166 1804 aa14.17□□□□□ -0.14
USP4-204ENST00000416417 MYO5AQ9Y4I1 1855 aaKnown RBP14.17□□□□□ -0.14
USP4-204ENST00000416417 COL2A1P02458 1487 aaPredicted RBP14.16□□□□□ -0.14
USP4-204ENST00000416417 USP17L5A8MUK1 530 aa14.16□□□□□ -0.14
USP4-204ENST00000416417 APBB1O00213 710 aa14.16□□□□□ -0.14
USP4-204ENST00000416417 IDH1O75874 414 aaKnown RBP14.16□□□□□ -0.14
USP4-204ENST00000416417 BAG3O95817 575 aa14.16□□□□□ -0.14
USP4-204ENST00000416417 MAP4K4O95819 1239 aaPredicted RBP14.16□□□□□ -0.14
USP4-204ENST00000416417 PI4KBQ9UBF8 816 aa14.16□□□□□ -0.14
USP4-204ENST00000416417 MGAMO43451 1857 aa14.16□□□□□ -0.14
USP4-204ENST00000416417 MAST2Q6P0Q8 1798 aa14.16□□□□□ -0.14
USP4-204ENST00000416417 H0YGN5 161 aa14.15□□□□□ -0.14
USP4-204ENST00000416417 INHAP05111 366 aa14.15□□□□□ -0.14
USP4-204ENST00000416417 PPP4CP60510 307 aa14.15□□□□□ -0.14
USP4-204ENST00000416417 MTMR2Q13614 643 aa14.15□□□□□ -0.14
USP4-204ENST00000416417 CRACR2BQ8N4Y2 399 aaPredicted RBP14.15□□□□□ -0.14
USP4-204ENST00000416417 PROCA1Q8NCQ7 364 aaPredicted RBP14.15□□□□□ -0.14
USP4-204ENST00000416417 ASCC2Q9H1I8 757 aaPredicted RBP14.15□□□□□ -0.14
USP4-204ENST00000416417 IL1RAPL2Q9NP60 686 aa14.15□□□□□ -0.14
USP4-204ENST00000416417 HERC5Q9UII4 1024 aaKnown RBP14.15□□□□□ -0.14
USP4-204ENST00000416417 ATAD5Q96QE3 1844 aa14.15□□□□□ -0.14
USP4-204ENST00000416417 PLCG2P16885 1265 aa14.15□□□□□ -0.14
USP4-204ENST00000416417 UBXN2AP68543 259 aa14.15□□□□□ -0.14
USP4-204ENST00000416417 AACSQ86V21 672 aa14.15□□□□□ -0.14
USP4-204ENST00000416417 MAGEB6Q8N7X4 407 aa14.15□□□□□ -0.14
USP4-204ENST00000416417 SLAIN1Q8ND83 568 aa14.15□□□□□ -0.14
USP4-204ENST00000416417 GCC1Q96CN9 775 aa14.15□□□□□ -0.14
USP4-204ENST00000416417 COLQQ9Y215 455 aaPredicted RBP14.15□□□□□ -0.14
USP4-204ENST00000416417 GJB1P08034 283 aa14.14□□□□□ -0.15
USP4-204ENST00000416417 GJA8P48165 433 aa14.14□□□□□ -0.15
USP4-204ENST00000416417 DPF3Q92784 378 aa14.14□□□□□ -0.15
USP4-204ENST00000416417 ZNF512BQ96KM6 892 aaPredicted RBP14.14□□□□□ -0.15
USP4-204ENST00000416417 TRIM34Q9BYJ4 488 aa14.14□□□□□ -0.15
USP4-204ENST00000416417 DHX36Q9H2U1 1008 aaKnown RBP14.14□□□□□ -0.15
USP4-204ENST00000416417 PNMA3Q9UL41 463 aa14.14□□□□□ -0.15
USP4-204ENST00000416417 LOC285556D6RIA3 1793 aa14.13□□□□□ -0.15
USP4-204ENST00000416417 FAM110CQ1W6H9 321 aa14.13□□□□□ -0.15
USP4-204ENST00000416417 SH3D19Q5HYK7 790 aa14.13□□□□□ -0.15
USP4-204ENST00000416417 U2AF1L4Q8WU68 220 aaKnown RBP14.13□□□□□ -0.15
USP4-204ENST00000416417 AS3MTQ9HBK9 375 aa14.13□□□□□ -0.15
USP4-204ENST00000416417 CDK5RAP2Q96SN8 1893 aa14.13□□□□□ -0.15
USP4-204ENST00000416417 USP5P45974 858 aa14.12□□□□□ -0.15
USP4-204ENST00000416417 TRIM32Q13049 653 aa14.12□□□□□ -0.15
USP4-204ENST00000416417 ZYXQ15942 572 aaKnown RBP14.12□□□□□ -0.15
USP4-204ENST00000416417 COA7Q96BR5 231 aa14.12□□□□□ -0.15
USP4-204ENST00000416417 DEFB118Q96PH6 123 aa14.12□□□□□ -0.15
USP4-204ENST00000416417 P2RX7Q99572 595 aaKnown RBP14.12□□□□□ -0.15
USP4-204ENST00000416417 WDR18Q9BV38 432 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms