RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 STRIP1Q5VSL9 837 aa9.78□□□□□ -0.84
SYNE1-211ENST00000413186 GRPEL1Q9HAV7 217 aa9.78□□□□□ -0.84
SYNE1-211ENST00000413186 GOPCQ9HD26 462 aa9.78□□□□□ -0.84
SYNE1-211ENST00000413186 LRRC4BQ9NT99 713 aa9.78□□□□□ -0.84
SYNE1-211ENST00000413186 SERPINB13Q9UIV8 391 aa9.78□□□□□ -0.84
SYNE1-211ENST00000413186 MED23Q9ULK4 1368 aa9.78□□□□□ -0.84
SYNE1-211ENST00000413186 DEXIO95424 95 aa9.78□□□□□ -0.84
SYNE1-211ENST00000413186 SRGNP10124 158 aa9.78□□□□□ -0.84
SYNE1-211ENST00000413186 CASP7P55210 303 aa9.78□□□□□ -0.84
SYNE1-211ENST00000413186 STIM1Q13586 685 aa9.78□□□□□ -0.84
SYNE1-211ENST00000413186 FOXP4Q8IVH2 680 aaPredicted RBP9.78□□□□□ -0.84
SYNE1-211ENST00000413186 CEP57L1Q8IYX8 460 aa9.78□□□□□ -0.84
SYNE1-211ENST00000413186 KAZALD1Q96I82 304 aa9.78□□□□□ -0.84
SYNE1-211ENST00000413186 DACH1Q9UI36 760 aa9.78□□□□□ -0.84
SYNE1-211ENST00000413186 DIXDC1Q155Q3 683 aa9.78□□□□□ -0.84
SYNE1-211ENST00000413186 STRBPQ96SI9 672 aaKnown RBP9.78□□□□□ -0.84
SYNE1-211ENST00000413186 ZNF277Q9NRM2 450 aaPredicted RBP9.78□□□□□ -0.84
SYNE1-211ENST00000413186 TRPM3Q9HCF6 1732 aaPredicted RBP9.78□□□□□ -0.84
SYNE1-211ENST00000413186 DYNLL1P63167 89 aaKnown RBP9.78□□□□□ -0.84
SYNE1-211ENST00000413186 LCORLQ8N3X6 602 aa9.78□□□□□ -0.84
SYNE1-211ENST00000413186 ZNF274Q96GC6 653 aaPredicted RBP9.78□□□□□ -0.84
SYNE1-211ENST00000413186 PUS7LQ9H0K6 701 aaKnown RBP9.78□□□□□ -0.84
SYNE1-211ENST00000413186 ZSWIM6Q9HCJ5 1215 aa9.78□□□□□ -0.84
SYNE1-211ENST00000413186 PI4KBQ9UBF8 816 aa9.78□□□□□ -0.84
SYNE1-211ENST00000413186 PNMA2Q9UL42 364 aa9.78□□□□□ -0.84
SYNE1-211ENST00000413186 M0R2C6 588 aa9.77□□□□□ -0.84
SYNE1-211ENST00000413186 CCDC192P0DO97 292 aa9.77□□□□□ -0.84
SYNE1-211ENST00000413186 CPA1P15085 419 aa9.77□□□□□ -0.84
SYNE1-211ENST00000413186 FBXO33Q7Z6M2 555 aa9.77□□□□□ -0.84
SYNE1-211ENST00000413186 SMARCC2Q8TAQ2 1214 aa9.77□□□□□ -0.84
SYNE1-211ENST00000413186 CSRNP1Q96S65 589 aa9.77□□□□□ -0.84
SYNE1-211ENST00000413186 ZSCAN10Q96SZ4 725 aaPredicted RBP9.77□□□□□ -0.84
SYNE1-211ENST00000413186 TNMDQ9H2S6 317 aa9.77□□□□□ -0.84
SYNE1-211ENST00000413186 TCP11L1Q9NUJ3 509 aa9.77□□□□□ -0.84
SYNE1-211ENST00000413186 NHSL1Q5SYE7 1610 aa9.77□□□□□ -0.85
SYNE1-211ENST00000413186 PRDX5P30044 214 aa9.77□□□□□ -0.85
SYNE1-211ENST00000413186 CRKP46108 304 aa9.77□□□□□ -0.85
SYNE1-211ENST00000413186 CFAP100Q494V2 611 aa9.77□□□□□ -0.85
SYNE1-211ENST00000413186 PTF1AQ7RTS3 328 aa9.77□□□□□ -0.85
SYNE1-211ENST00000413186 ZNF408Q9H9D4 720 aa9.77□□□□□ -0.85
SYNE1-211ENST00000413186 FAM43AQ8N2R8 423 aa9.77□□□□□ -0.85
SYNE1-211ENST00000413186 CHURC1Q8WUH1 139 aa9.77□□□□□ -0.85
SYNE1-211ENST00000413186 TNPO1Q92973 898 aaKnown RBP9.77□□□□□ -0.85
SYNE1-211ENST00000413186 NAP1L4Q99733 375 aaKnown RBP9.77□□□□□ -0.85
SYNE1-211ENST00000413186 MROH7-TTC4A0A0A0MT08 1334 aa9.77□□□□□ -0.85
SYNE1-211ENST00000413186 SPDYE3A6NKU9 549 aa9.77□□□□□ -0.85
SYNE1-211ENST00000413186 HOXA10P31260 410 aaPredicted RBP9.77□□□□□ -0.85
SYNE1-211ENST00000413186 NOM1Q5C9Z4 860 aaKnown RBP9.77□□□□□ -0.85
SYNE1-211ENST00000413186 BRAPQ7Z569 592 aa9.77□□□□□ -0.85
SYNE1-211ENST00000413186 SMC2O95347 1197 aa9.76□□□□□ -0.85
SYNE1-211ENST00000413186 TOP1P11387 765 aaKnown RBP9.76□□□□□ -0.85
SYNE1-211ENST00000413186 MAPK8IP2Q13387 824 aaPredicted RBP9.76□□□□□ -0.85
SYNE1-211ENST00000413186 ZNF589Q86UQ0 364 aaPredicted RBP9.76□□□□□ -0.85
SYNE1-211ENST00000413186 RNF181Q9P0P0 153 aa9.76□□□□□ -0.85
SYNE1-211ENST00000413186 CD2APQ9Y5K6 639 aa9.76□□□□□ -0.85
SYNE1-211ENST00000413186 CLRN2A0PK11 232 aa9.76□□□□□ -0.85
SYNE1-211ENST00000413186 ZNF654Q8IZM8 581 aa9.76□□□□□ -0.85
SYNE1-211ENST00000413186 CLIP2Q9UDT6 1046 aa9.76□□□□□ -0.85
SYNE1-211ENST00000413186 ALX1Q15699 326 aa9.76□□□□□ -0.85
SYNE1-211ENST00000413186 ZNF827Q17R98 1081 aa9.76□□□□□ -0.85
SYNE1-211ENST00000413186 ABCB5Q2M3G0 1257 aa9.76□□□□□ -0.85
SYNE1-211ENST00000413186 NUP62CLQ9H1M0 184 aa9.76□□□□□ -0.85
SYNE1-211ENST00000413186 TNKSO95271 1327 aa9.76□□□□□ -0.85
SYNE1-211ENST00000413186 CYP21A2P08686 494 aa9.76□□□□□ -0.85
SYNE1-211ENST00000413186 KRT2P35908 639 aa9.76□□□□□ -0.85
SYNE1-211ENST00000413186 FAM47AQ5JRC9 791 aa9.76□□□□□ -0.85
SYNE1-211ENST00000413186 ATL3Q6DD88 541 aa9.76□□□□□ -0.85
SYNE1-211ENST00000413186 GPCPD1Q9NPB8 672 aa9.76□□□□□ -0.85
SYNE1-211ENST00000413186 SSBP05455 408 aaKnown RBP eCLIP9.75□□□□□ -0.85
SYNE1-211ENST00000413186 ICA1Q05084 483 aa9.75□□□□□ -0.85
SYNE1-211ENST00000413186 PABPC4Q13310 644 aaKnown RBP eCLIP9.75□□□□□ -0.85
SYNE1-211ENST00000413186 KLHL40Q2TBA0 621 aa9.75□□□□□ -0.85
SYNE1-211ENST00000413186 TDRD7Q8NHU6 1098 aaKnown RBP9.75□□□□□ -0.85
SYNE1-211ENST00000413186 KCNG4Q8TDN1 519 aa9.75□□□□□ -0.85
SYNE1-211ENST00000413186 ZNF609O15014 1411 aa9.75□□□□□ -0.85
SYNE1-211ENST00000413186 DDAH1O94760 285 aa9.75□□□□□ -0.85
SYNE1-211ENST00000413186 KANSL2Q9H9L4 492 aa9.75□□□□□ -0.85
SYNE1-211ENST00000413186 TRIM75PA6NK02 468 aa9.75□□□□□ -0.85
SYNE1-211ENST00000413186 ZBED4O75132 1171 aa9.75□□□□□ -0.85
SYNE1-211ENST00000413186 RXRAP19793 462 aa9.75□□□□□ -0.85
SYNE1-211ENST00000413186 UBA7P41226 1012 aa9.75□□□□□ -0.85
SYNE1-211ENST00000413186 MMP14P50281 582 aa9.75□□□□□ -0.85
SYNE1-211ENST00000413186 DDR1Q08345 913 aa9.75□□□□□ -0.85
SYNE1-211ENST00000413186 PNMA1Q8ND90 353 aa9.75□□□□□ -0.85
SYNE1-211ENST00000413186 R3HCC1Q9Y3T6 440 aaKnown RBP9.75□□□□□ -0.85
SYNE1-211ENST00000413186 PNPLA7Q6ZV29 1317 aa9.75□□□□□ -0.85
SYNE1-211ENST00000413186 IQCA1LA6NCM1 817 aa9.74□□□□□ -0.85
SYNE1-211ENST00000413186 TEX35Q5T0J7 233 aa9.74□□□□□ -0.85
SYNE1-211ENST00000413186 ERMNQ8TAM6 284 aa9.74□□□□□ -0.85
SYNE1-211ENST00000413186 CALML4Q96GE6 196 aa9.74□□□□□ -0.85
SYNE1-211ENST00000413186 TANGO6Q9C0B7 1094 aa9.74□□□□□ -0.85
SYNE1-211ENST00000413186 CTAGE5O15320 804 aa9.74□□□□□ -0.85
SYNE1-211ENST00000413186 TM4SF1P30408 202 aa9.74□□□□□ -0.85
SYNE1-211ENST00000413186 PRKAB2O43741 272 aa9.74□□□□□ -0.85
SYNE1-211ENST00000413186 F13A1P00488 732 aa9.74□□□□□ -0.85
SYNE1-211ENST00000413186 PLS1Q14651 629 aa9.74□□□□□ -0.85
SYNE1-211ENST00000413186 APOBEC3FQ8IUX4 373 aaKnown RBP9.74□□□□□ -0.85
SYNE1-211ENST00000413186 VPS33BQ9H267 617 aa9.74□□□□□ -0.85
SYNE1-211ENST00000413186 COL16A1Q07092 1604 aaPredicted RBP9.74□□□□□ -0.85
SYNE1-211ENST00000413186 PPFIA3O75145 1194 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms