RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 RIOK1Q9BRS2 568 aaKnown RBP23.2■■□□□ 1.3
SF3A1-202ENST00000411423 SAP30BPQ9UHR5 308 aaKnown RBP23.2■■□□□ 1.3
SF3A1-202ENST00000411423 TCRBV5S4A2TA0A5A2 114 aa23.19■■□□□ 1.3
SF3A1-202ENST00000411423 CTNND1O60716 968 aaKnown RBP23.19■■□□□ 1.3
SF3A1-202ENST00000411423 PDE6AP16499 860 aa23.19■■□□□ 1.3
SF3A1-202ENST00000411423 JAG1P78504 1218 aa23.19■■□□□ 1.3
SF3A1-202ENST00000411423 SLC4A8Q2Y0W8 1093 aa23.19■■□□□ 1.3
SF3A1-202ENST00000411423 CD99L2Q8TCZ2 262 aa23.19■■□□□ 1.3
SF3A1-202ENST00000411423 PALD1Q9ULE6 856 aa23.19■■□□□ 1.3
SF3A1-202ENST00000411423 AFG3L2Q9Y4W6 797 aa23.19■■□□□ 1.3
SF3A1-202ENST00000411423 ZHX2Q9Y6X8 837 aa23.19■■□□□ 1.3
SF3A1-202ENST00000411423 SHROOM1Q2M3G4 852 aaPredicted RBP23.18■■□□□ 1.3
SF3A1-202ENST00000411423 GPAT2Q6NUI2 795 aa23.18■■□□□ 1.3
SF3A1-202ENST00000411423 TTF1Q15361 905 aaPredicted RBP23.17■■□□□ 1.3
SF3A1-202ENST00000411423 SLC9C2Q5TAH2 1124 aa23.17■■□□□ 1.3
SF3A1-202ENST00000411423 METTL16Q86W50 562 aaKnown RBP23.17■■□□□ 1.3
SF3A1-202ENST00000411423 HAUS7Q99871 368 aa23.17■■□□□ 1.3
SF3A1-202ENST00000411423 PICK1Q9NRD5 415 aa23.17■■□□□ 1.3
SF3A1-202ENST00000411423 PAG1Q9NWQ8 432 aa23.17■■□□□ 1.3
SF3A1-202ENST00000411423 ZSWIM8A7E2V4 1837 aa23.17■■□□□ 1.3
SF3A1-202ENST00000411423 ATAD5Q96QE3 1844 aa23.17■■□□□ 1.3
SF3A1-202ENST00000411423 DDX60LQ5H9U9 1706 aaKnown RBP23.16■■□□□ 1.3
SF3A1-202ENST00000411423 PTPRFP10586 1907 aa23.16■■□□□ 1.3
SF3A1-202ENST00000411423 ZNF532Q9HCE3 1301 aa23.16■■□□□ 1.3
SF3A1-202ENST00000411423 CXCL11O14625 94 aa23.16■■□□□ 1.3
SF3A1-202ENST00000411423 TSHZ3Q63HK5 1081 aa23.16■■□□□ 1.3
SF3A1-202ENST00000411423 ANKRD23Q86SG2 305 aa23.16■■□□□ 1.3
SF3A1-202ENST00000411423 DHX36Q9H2U1 1008 aaKnown RBP23.16■■□□□ 1.3
SF3A1-202ENST00000411423 ZFYVE28Q9HCC9 887 aa23.16■■□□□ 1.3
SF3A1-202ENST00000411423 PI4KBQ9UBF8 816 aa23.16■■□□□ 1.3
SF3A1-202ENST00000411423 HPS5Q9UPZ3 1129 aa23.16■■□□□ 1.3
SF3A1-202ENST00000411423 A0A0G2JLL6 359 aaPredicted RBP23.15■■□□□ 1.3
SF3A1-202ENST00000411423 CAP2P40123 477 aa23.15■■□□□ 1.3
SF3A1-202ENST00000411423 SP3Q02447 781 aa23.15■■□□□ 1.3
SF3A1-202ENST00000411423 EVX2Q03828 476 aa23.15■■□□□ 1.3
SF3A1-202ENST00000411423 OTOP1Q7RTM1 612 aa23.15■■□□□ 1.3
SF3A1-202ENST00000411423 PRRT2Q7Z6L0 340 aaPredicted RBP23.15■■□□□ 1.3
SF3A1-202ENST00000411423 ZCCHC17Q9NP64 241 aaKnown RBP23.15■■□□□ 1.3
SF3A1-202ENST00000411423 HERC5Q9UII4 1024 aaKnown RBP23.15■■□□□ 1.3
SF3A1-202ENST00000411423 ADGRA2Q96PE1 1338 aa23.14■■□□□ 1.3
SF3A1-202ENST00000411423 MYH1P12882 1939 aa23.14■■□□□ 1.3
SF3A1-202ENST00000411423 PDHXO00330 501 aa23.14■■□□□ 1.29
SF3A1-202ENST00000411423 TLR2O60603 784 aa23.14■■□□□ 1.29
SF3A1-202ENST00000411423 TRIM17Q9Y577 477 aa23.14■■□□□ 1.29
SF3A1-202ENST00000411423 MAGEB6P1A0A0J9YX57 407 aa23.13■■□□□ 1.29
SF3A1-202ENST00000411423 TRIM75PA6NK02 468 aa23.13■■□□□ 1.29
SF3A1-202ENST00000411423 ADD2P35612 726 aa23.13■■□□□ 1.29
SF3A1-202ENST00000411423 USP5P45974 858 aa23.13■■□□□ 1.29
SF3A1-202ENST00000411423 LCORLQ8N3X6 602 aa23.13■■□□□ 1.29
SF3A1-202ENST00000411423 PKN2Q16513 984 aaKnown RBP23.12■■□□□ 1.29
SF3A1-202ENST00000411423 FBXO46Q6PJ61 603 aaPredicted RBP23.12■■□□□ 1.29
SF3A1-202ENST00000411423 OTUD7AQ8TE49 926 aaPredicted RBP23.12■■□□□ 1.29
SF3A1-202ENST00000411423 ERO1AQ96HE7 468 aa23.12■■□□□ 1.29
SF3A1-202ENST00000411423 ARHGAP39Q9C0H5 1083 aa23.12■■□□□ 1.29
SF3A1-202ENST00000411423 CTGFP29279 349 aa23.11■■□□□ 1.29
SF3A1-202ENST00000411423 TMED8Q6PL24 325 aaPredicted RBP23.11■■□□□ 1.29
SF3A1-202ENST00000411423 C17orf99Q6UX52 265 aa23.11■■□□□ 1.29
SF3A1-202ENST00000411423 FOXP4Q8IVH2 680 aaPredicted RBP23.11■■□□□ 1.29
SF3A1-202ENST00000411423 ECHDC1Q9NTX5 307 aa23.11■■□□□ 1.29
SF3A1-202ENST00000411423 CPA4Q9UI42 421 aa23.11■■□□□ 1.29
SF3A1-202ENST00000411423 NAV1Q8NEY1 1877 aa23.11■■□□□ 1.29
SF3A1-202ENST00000411423 GDF11O95390 407 aa23.1■■□□□ 1.29
SF3A1-202ENST00000411423 CYP2C8P10632 490 aa23.1■■□□□ 1.29
SF3A1-202ENST00000411423 PLCD1P51178 756 aa23.1■■□□□ 1.29
SF3A1-202ENST00000411423 GADL1Q6ZQY3 521 aa23.1■■□□□ 1.29
SF3A1-202ENST00000411423 SDR42E1Q8WUS8 393 aa23.1■■□□□ 1.29
SF3A1-202ENST00000411423 ARMT1Q9H993 441 aa23.1■■□□□ 1.29
SF3A1-202ENST00000411423 CENPFP49454 3210 aa23.09■■□□□ 1.29
SF3A1-202ENST00000411423 PRKAB2O43741 272 aa23.09■■□□□ 1.29
SF3A1-202ENST00000411423 SPP2Q13103 211 aa23.09■■□□□ 1.29
SF3A1-202ENST00000411423 CERS3Q8IU89 383 aa23.09■■□□□ 1.29
SF3A1-202ENST00000411423 CRACR2BQ8N4Y2 399 aaPredicted RBP23.09■■□□□ 1.29
SF3A1-202ENST00000411423 MYH7P12883 1935 aa23.08■■□□□ 1.29
SF3A1-202ENST00000411423 ECM2O94769 699 aaPredicted RBP23.08■■□□□ 1.29
SF3A1-202ENST00000411423 HLA-DOAP06340 250 aa23.08■■□□□ 1.29
SF3A1-202ENST00000411423 TREML2Q5T2D2 321 aa23.08■■□□□ 1.29
SF3A1-202ENST00000411423 EFCC1Q9HA90 598 aa23.08■■□□□ 1.29
SF3A1-202ENST00000411423 LOC285556D6RIA3 1793 aa23.08■■□□□ 1.29
SF3A1-202ENST00000411423 USP17L5A8MUK1 530 aa23.07■■□□□ 1.28
SF3A1-202ENST00000411423 SMIM22K7EJ46 135 aa23.07■■□□□ 1.28
SF3A1-202ENST00000411423 MBD4O95243 580 aa23.07■■□□□ 1.28
SF3A1-202ENST00000411423 CYP2D6P10635 497 aa23.07■■□□□ 1.28
SF3A1-202ENST00000411423 SOX10P56693 466 aa23.07■■□□□ 1.28
SF3A1-202ENST00000411423 TATDN1Q6P1N9 297 aa23.07■■□□□ 1.28
SF3A1-202ENST00000411423 FASTKD5Q7L8L6 764 aaKnown RBP23.07■■□□□ 1.28
SF3A1-202ENST00000411423 ZNF280CQ8ND82 737 aa23.07■■□□□ 1.28
SF3A1-202ENST00000411423 PTPN22Q9Y2R2 807 aa23.07■■□□□ 1.28
SF3A1-202ENST00000411423 LACTBP83111 547 aaPredicted RBP23.06■■□□□ 1.28
SF3A1-202ENST00000411423 CRNKL1Q9BZJ0 848 aaKnown RBP23.06■■□□□ 1.28
SF3A1-202ENST00000411423 EHD4Q9H223 541 aa23.06■■□□□ 1.28
SF3A1-202ENST00000411423 DCP1AQ9NPI6 582 aaPredicted RBP23.06■■□□□ 1.28
SF3A1-202ENST00000411423 ZBTB21Q9ULJ3 1066 aa23.06■■□□□ 1.28
SF3A1-202ENST00000411423 SALL3Q9BXA9 1300 aa23.06■■□□□ 1.28
SF3A1-202ENST00000411423 BCRP11274 1271 aa23.05■■□□□ 1.28
SF3A1-202ENST00000411423 RGS19P49795 217 aa23.05■■□□□ 1.28
SF3A1-202ENST00000411423 HMGCS2P54868 508 aa23.05■■□□□ 1.28
SF3A1-202ENST00000411423 UBE3CQ15386 1083 aa23.05■■□□□ 1.28
SF3A1-202ENST00000411423 PI4K2BQ8TCG2 481 aa23.05■■□□□ 1.28
SF3A1-202ENST00000411423 PUS7LQ9H0K6 701 aaKnown RBP23.05■■□□□ 1.28
SF3A1-202ENST00000411423 SERPINB13Q9UIV8 391 aa23.05■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 95.2 ms