RNA–Protein interactions for RNA: ENST00000409604.1

SNX13-202, Transcript of sorting nexin 13, humanhuman

TSL 1 (best) BASIC

Gene SNX13, Length 4,146 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-202ENST00000409604 CDC37L1Q7L3B6 337 aa13.11□□□□□ -0.31
SNX13-202ENST00000409604 CCAR2Q8N163 923 aaKnown RBP13.11□□□□□ -0.31
SNX13-202ENST00000409604 CNNM3Q8NE01 707 aa13.11□□□□□ -0.31
SNX13-202ENST00000409604 STRBPQ96SI9 672 aaKnown RBP13.11□□□□□ -0.31
SNX13-202ENST00000409604 SCAND2PQ9GZW5 306 aaPredicted RBP13.11□□□□□ -0.31
SNX13-202ENST00000409604 CSF1RP07333 972 aa13.11□□□□□ -0.31
SNX13-202ENST00000409604 USP17L2Q6R6M4 530 aa13.11□□□□□ -0.31
SNX13-202ENST00000409604 TSPY26PQ9H489 355 aa13.11□□□□□ -0.31
SNX13-202ENST00000409604 CNTNAP4Q9C0A0 1308 aa13.11□□□□□ -0.31
SNX13-202ENST00000409604 F13A1P00488 732 aa13.11□□□□□ -0.31
SNX13-202ENST00000409604 ENOX2Q16206 610 aaKnown RBP13.11□□□□□ -0.31
SNX13-202ENST00000409604 SAMD7Q7Z3H4 446 aa13.11□□□□□ -0.31
SNX13-202ENST00000409604 AMIGO3Q86WK7 504 aa13.11□□□□□ -0.31
SNX13-202ENST00000409604 DCPSQ96C86 337 aaKnown RBP13.11□□□□□ -0.31
SNX13-202ENST00000409604 BMP2KQ9NSY1 1161 aaPredicted RBP13.11□□□□□ -0.31
SNX13-202ENST00000409604 EPS15P42566 896 aa13.1□□□□□ -0.31
SNX13-202ENST00000409604 MATR3P43243 847 aaKnown RBP eCLIP13.1□□□□□ -0.317e-6■■■■□ 23
SNX13-202ENST00000409604 CRKP46108 304 aa13.1□□□□□ -0.31
SNX13-202ENST00000409604 SF3B3Q15393 1217 aaKnown RBP13.1□□□□□ -0.31
SNX13-202ENST00000409604 COA1Q9GZY4 146 aa13.1□□□□□ -0.31
SNX13-202ENST00000409604 BRPF3Q9ULD4 1205 aa13.1□□□□□ -0.31
SNX13-202ENST00000409604 NRXN3Q9Y4C0 1643 aa13.1□□□□□ -0.31
SNX13-202ENST00000409604 SERPINC1P01008 464 aa13.1□□□□□ -0.31
SNX13-202ENST00000409604 ICA1Q05084 483 aa13.1□□□□□ -0.31
SNX13-202ENST00000409604 DIS3L2Q8IYB7 885 aaKnown RBP13.1□□□□□ -0.31
SNX13-202ENST00000409604 RASGRP4Q8TDF6 673 aa13.1□□□□□ -0.31
SNX13-202ENST00000409604 POLLQ9UGP5 575 aa13.1□□□□□ -0.31
SNX13-202ENST00000409604 SERPINB13Q9UIV8 391 aa13.1□□□□□ -0.31
SNX13-202ENST00000409604 ABCC12Q96J65 1359 aa13.1□□□□□ -0.31
SNX13-202ENST00000409604 WDHD1O75717 1129 aaPredicted RBP13.1□□□□□ -0.31
SNX13-202ENST00000409604 MYCLP12524 364 aaPredicted RBP13.1□□□□□ -0.31
SNX13-202ENST00000409604 TSR1Q2NL82 804 aaKnown RBP13.1□□□□□ -0.31
SNX13-202ENST00000409604 PGBD1Q96JS3 809 aa13.1□□□□□ -0.31
SNX13-202ENST00000409604 A0A1B0GVL5 298 aa13.09□□□□□ -0.31
SNX13-202ENST00000409604 SPDYE3A6NKU9 549 aa13.09□□□□□ -0.31
SNX13-202ENST00000409604 ERCC3P19447 782 aa13.09□□□□□ -0.31
SNX13-202ENST00000409604 RAD51AP2Q09MP3 1159 aa13.09□□□□□ -0.31
SNX13-202ENST00000409604 RTKN2Q8IZC4 609 aa13.09□□□□□ -0.31
SNX13-202ENST00000409604 ANKRD20A12PQ8NF67 263 aa13.09□□□□□ -0.31
SNX13-202ENST00000409604 DACT1Q9NYF0 836 aa13.09□□□□□ -0.31
SNX13-202ENST00000409604 ADAMTSL3P82987 1691 aa13.09□□□□□ -0.31
SNX13-202ENST00000409604 TNIP1Q15025 636 aa13.09□□□□□ -0.31
SNX13-202ENST00000409604 CC2D2BQ6DHV5 1058 aa13.09□□□□□ -0.31
SNX13-202ENST00000409604 ZSCAN10Q96SZ4 725 aaPredicted RBP13.09□□□□□ -0.31
SNX13-202ENST00000409604 MYOM1P52179 1685 aa13.09□□□□□ -0.31
SNX13-202ENST00000409604 VWA3AA6NCI4 1184 aa13.09□□□□□ -0.31
SNX13-202ENST00000409604 SMCR8Q8TEV9 937 aaPredicted RBP13.09□□□□□ -0.31
SNX13-202ENST00000409604 KLRF2D3W0D1 207 aa13.08□□□□□ -0.31
SNX13-202ENST00000409604 CCDC192P0DO97 292 aa13.08□□□□□ -0.31
SNX13-202ENST00000409604 GADL1Q6ZQY3 521 aa13.08□□□□□ -0.31
SNX13-202ENST00000409604 DHX58Q96C10 678 aa13.08□□□□□ -0.31
SNX13-202ENST00000409604 BIN2Q9UBW5 565 aaPredicted RBP13.08□□□□□ -0.31
SNX13-202ENST00000409604 RASSF7Q02833 373 aa13.08□□□□□ -0.32
SNX13-202ENST00000409604 TBC1D10CQ8IV04 446 aa13.08□□□□□ -0.32
SNX13-202ENST00000409604 VTI1AQ96AJ9 217 aa13.08□□□□□ -0.32
SNX13-202ENST00000409604 TMEM87BQ96K49 555 aa13.08□□□□□ -0.32
SNX13-202ENST00000409604 ARHGEF10LQ9HCE6 1279 aa13.08□□□□□ -0.32
SNX13-202ENST00000409604 ARPP21Q9UBL0 812 aaPredicted RBP13.08□□□□□ -0.32
SNX13-202ENST00000409604 USP32Q8NFA0 1604 aa13.08□□□□□ -0.32
SNX13-202ENST00000409604 TNS2Q63HR2 1409 aa13.08□□□□□ -0.32
SNX13-202ENST00000409604 TMEM232C9JQI7 657 aa13.08□□□□□ -0.32
SNX13-202ENST00000409604 MAP3K11Q16584 847 aa13.08□□□□□ -0.32
SNX13-202ENST00000409604 ABCB5Q2M3G0 1257 aa13.08□□□□□ -0.32
SNX13-202ENST00000409604 MAEAQ7L5Y9 396 aa13.08□□□□□ -0.32
SNX13-202ENST00000409604 R3HCC1Q9Y3T6 440 aaKnown RBP13.08□□□□□ -0.32
SNX13-202ENST00000409604 ATP6V0A2Q9Y487 856 aa13.08□□□□□ -0.32
SNX13-202ENST00000409604 ALAS1P13196 640 aa13.07□□□□□ -0.32
SNX13-202ENST00000409604 GNAQP50148 359 aa13.07□□□□□ -0.32
SNX13-202ENST00000409604 SP8Q8IXZ3 490 aa13.07□□□□□ -0.32
SNX13-202ENST00000409604 GH2P01242 217 aa13.07□□□□□ -0.32
SNX13-202ENST00000409604 TPM2P07951 284 aa13.07□□□□□ -0.32
SNX13-202ENST00000409604 SLURP2P0DP57 97 aa13.07□□□□□ -0.32
SNX13-202ENST00000409604 BCL2L12Q9HB09 334 aa13.07□□□□□ -0.32
SNX13-202ENST00000409604 TCP11L1Q9NUJ3 509 aa13.07□□□□□ -0.32
SNX13-202ENST00000409604 GINS2Q9Y248 185 aa13.07□□□□□ -0.32
SNX13-202ENST00000409604 CSADQ9Y600 493 aa13.07□□□□□ -0.32
SNX13-202ENST00000409604 KIF20BQ96Q89 1820 aa13.07□□□□□ -0.32
SNX13-202ENST00000409604 KRT40Q6A162 431 aa13.07□□□□□ -0.32
SNX13-202ENST00000409604 FANCBQ8NB91 859 aa13.07□□□□□ -0.32
SNX13-202ENST00000409604 CCDC12Q8WUD4 166 aaPredicted RBP13.07□□□□□ -0.32
SNX13-202ENST00000409604 SNX21Q969T3 373 aa13.07□□□□□ -0.32
SNX13-202ENST00000409604 NUP88Q99567 741 aaPredicted RBP13.07□□□□□ -0.32
SNX13-202ENST00000409604 FTOQ9C0B1 505 aaKnown RBP eCLIP13.07□□□□□ -0.32
SNX13-202ENST00000409604 SCRN1Q12765 414 aa13.07□□□□□ -0.32
SNX13-202ENST00000409604 C6orf50Q9HD87 102 aa13.07□□□□□ -0.32
SNX13-202ENST00000409604 BTBD18B2RXH4 712 aa13.06□□□□□ -0.32
SNX13-202ENST00000409604 FLOT1O75955 427 aa13.06□□□□□ -0.32
SNX13-202ENST00000409604 TXKP42681 527 aa13.06□□□□□ -0.32
SNX13-202ENST00000409604 CEP131Q9UPN4 1083 aa13.06□□□□□ -0.32
SNX13-202ENST00000409604 PODNQ7Z5L7 613 aa13.06□□□□□ -0.32
SNX13-202ENST00000409604 FAM177A1Q8N128 213 aaPredicted RBP13.06□□□□□ -0.32
SNX13-202ENST00000409604 TMOD4Q9NZQ9 345 aa13.06□□□□□ -0.32
SNX13-202ENST00000409604 MAPK8IP1Q9UQF2 711 aa13.06□□□□□ -0.32
SNX13-202ENST00000409604 PPP1R12BO60237 982 aaPredicted RBP13.06□□□□□ -0.32
SNX13-202ENST00000409604 SRGNP10124 158 aa13.06□□□□□ -0.32
SNX13-202ENST00000409604 ARID4AP29374 1257 aaPredicted RBP13.06□□□□□ -0.32
SNX13-202ENST00000409604 PDIA3P30101 505 aaKnown RBP13.06□□□□□ -0.32
SNX13-202ENST00000409604 NAT10Q9H0A0 1025 aaKnown RBP13.06□□□□□ -0.32
SNX13-202ENST00000409604 MMRN2Q9H8L6 949 aa13.06□□□□□ -0.32
SNX13-202ENST00000409604 ATP8A2Q9NTI2 1148 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms