RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 APOA5Q6Q788 366 aa16.51■□□□□ 0.23
GPNMB-203ENST00000409458 NFXL1Q6ZNB6 911 aa16.51■□□□□ 0.23
GPNMB-203ENST00000409458 CLEC17AQ6ZS10 378 aa16.51■□□□□ 0.23
GPNMB-203ENST00000409458 AMOTL1Q8IY63 956 aa16.51■□□□□ 0.23
GPNMB-203ENST00000409458 NLGN2Q8NFZ4 835 aa16.51■□□□□ 0.23
GPNMB-203ENST00000409458 DYNLL2Q96FJ2 89 aa16.51■□□□□ 0.23
GPNMB-203ENST00000409458 ZDHHC15Q96MV8 337 aa16.51■□□□□ 0.23
GPNMB-203ENST00000409458 GBP4Q96PP9 640 aa16.51■□□□□ 0.23
GPNMB-203ENST00000409458 LLPHQ9BRT6 129 aaKnown RBP16.51■□□□□ 0.23
GPNMB-203ENST00000409458 MTA3Q9BTC8 594 aa16.51■□□□□ 0.23
GPNMB-203ENST00000409458 TAOK3Q9H2K8 898 aa16.51■□□□□ 0.23
GPNMB-203ENST00000409458 BCS1LQ9Y276 419 aa16.51■□□□□ 0.23
GPNMB-203ENST00000409458 PTPDC1A2A3K4 754 aa16.5■□□□□ 0.23
GPNMB-203ENST00000409458 NFKBIEO00221 500 aa16.5■□□□□ 0.23
GPNMB-203ENST00000409458 RANBP6O60518 1105 aaKnown RBP16.5■□□□□ 0.23
GPNMB-203ENST00000409458 WDHD1O75717 1129 aaPredicted RBP16.5■□□□□ 0.23
GPNMB-203ENST00000409458 RAD17O75943 681 aa16.5■□□□□ 0.23
GPNMB-203ENST00000409458 POLR3DP05423 398 aaPredicted RBP16.5■□□□□ 0.23
GPNMB-203ENST00000409458 PDE4BQ07343 736 aa16.5■□□□□ 0.23
GPNMB-203ENST00000409458 PICALMQ13492 652 aa16.5■□□□□ 0.23
GPNMB-203ENST00000409458 WTAPQ15007 396 aa16.5■□□□□ 0.23
GPNMB-203ENST00000409458 SART3Q15020 963 aaKnown RBP16.5■□□□□ 0.23
GPNMB-203ENST00000409458 UBAC1Q9BSL1 405 aa16.5■□□□□ 0.23
GPNMB-203ENST00000409458 DDX4Q9NQI0 724 aaKnown RBP16.5■□□□□ 0.23
GPNMB-203ENST00000409458 USP40Q9NVE5 1235 aa16.5■□□□□ 0.23
GPNMB-203ENST00000409458 TNKSO95271 1327 aa16.5■□□□□ 0.23
GPNMB-203ENST00000409458 WDR33Q9C0J8 1336 aaKnown RBP16.5■□□□□ 0.23
GPNMB-203ENST00000409458 PSMD14O00487 310 aa16.5■□□□□ 0.23
GPNMB-203ENST00000409458 BAG4O95429 457 aaKnown RBP16.5■□□□□ 0.23
GPNMB-203ENST00000409458 RXRAP19793 462 aa16.5■□□□□ 0.23
GPNMB-203ENST00000409458 HDLBPQ00341 1268 aaKnown RBP16.5■□□□□ 0.23
GPNMB-203ENST00000409458 SEC23AQ15436 765 aa16.5■□□□□ 0.23
GPNMB-203ENST00000409458 NIM1KQ8IY84 436 aa16.5■□□□□ 0.23
GPNMB-203ENST00000409458 DDX11Q96FC9 970 aa16.5■□□□□ 0.23
GPNMB-203ENST00000409458 MRIQ9BWK5 157 aa16.5■□□□□ 0.23
GPNMB-203ENST00000409458 ERICH2A1L162 156 aa16.49■□□□□ 0.23
GPNMB-203ENST00000409458 CCDC69A6NI79 296 aa16.49■□□□□ 0.23
GPNMB-203ENST00000409458 FAM47AQ5JRC9 791 aa16.49■□□□□ 0.23
GPNMB-203ENST00000409458 RSBN1LQ6PCB5 846 aaPredicted RBP16.49■□□□□ 0.23
GPNMB-203ENST00000409458 MICU3Q86XE3 530 aa16.49■□□□□ 0.23
GPNMB-203ENST00000409458 SLC44A5Q8NCS7 719 aa16.49■□□□□ 0.23
GPNMB-203ENST00000409458 ZSCAN10Q96SZ4 725 aaPredicted RBP16.49■□□□□ 0.23
GPNMB-203ENST00000409458 MYL10Q9BUA6 226 aa16.49■□□□□ 0.23
GPNMB-203ENST00000409458 SERPINA10Q9UK55 444 aa16.49■□□□□ 0.23
GPNMB-203ENST00000409458 MTMR6Q9Y217 621 aa16.49■□□□□ 0.23
GPNMB-203ENST00000409458 NID2Q14112 1375 aa16.48■□□□□ 0.23
GPNMB-203ENST00000409458 ZBTB43O43298 467 aa16.48■□□□□ 0.23
GPNMB-203ENST00000409458 VIL1P09327 827 aaKnown RBP16.48■□□□□ 0.23
GPNMB-203ENST00000409458 ZSCAN22P10073 491 aaPredicted RBP16.48■□□□□ 0.23
GPNMB-203ENST00000409458 METAP2P50579 478 aaKnown RBP eCLIP16.48■□□□□ 0.23
GPNMB-203ENST00000409458 LARP1BQ659C4 914 aaKnown RBP16.48■□□□□ 0.23
GPNMB-203ENST00000409458 ENAHQ8N8S7 591 aaPredicted RBP16.48■□□□□ 0.23
GPNMB-203ENST00000409458 CHAMP1Q96JM3 812 aa16.48■□□□□ 0.23
GPNMB-203ENST00000409458 ZNRF3Q9ULT6 936 aa16.48■□□□□ 0.23
GPNMB-203ENST00000409458 SLC12A7Q9Y666 1083 aa16.48■□□□□ 0.23
GPNMB-203ENST00000409458 MYO3BQ8WXR4 1341 aa16.47■□□□□ 0.23
GPNMB-203ENST00000409458 PPFIA3O75145 1194 aa16.47■□□□□ 0.23
GPNMB-203ENST00000409458 RBM5P52756 815 aaKnown RBP eCLIP16.47■□□□□ 0.23
GPNMB-203ENST00000409458 HMGN5P82970 282 aaKnown RBP16.47■□□□□ 0.23
GPNMB-203ENST00000409458 CHMP4CQ96CF2 233 aa16.47■□□□□ 0.23
GPNMB-203ENST00000409458 SPON1Q9HCB6 807 aa16.47■□□□□ 0.23
GPNMB-203ENST00000409458 VPS37CA5D8V6 355 aaPredicted RBP16.46■□□□□ 0.23
GPNMB-203ENST00000409458 GOLGA8AA7E2F4 631 aa16.46■□□□□ 0.23
GPNMB-203ENST00000409458 NMT2O60551 498 aa16.46■□□□□ 0.23
GPNMB-203ENST00000409458 RASSF7Q02833 373 aa16.46■□□□□ 0.23
GPNMB-203ENST00000409458 NFIAQ12857 509 aa16.46■□□□□ 0.23
GPNMB-203ENST00000409458 C16orf86Q6ZW13 317 aa16.46■□□□□ 0.23
GPNMB-203ENST00000409458 CDC37L1Q7L3B6 337 aa16.46■□□□□ 0.23
GPNMB-203ENST00000409458 IQCA1Q86XH1 822 aa16.46■□□□□ 0.23
GPNMB-203ENST00000409458 CCDC144CPQ8IYA2 1237 aa16.46■□□□□ 0.23
GPNMB-203ENST00000409458 GMLQ99445 158 aa16.46■□□□□ 0.23
GPNMB-203ENST00000409458 OSBPL5Q9H0X9 879 aaPredicted RBP16.46■□□□□ 0.23
GPNMB-203ENST00000409458 SIPA1L1O43166 1804 aa16.46■□□□□ 0.23
GPNMB-203ENST00000409458 TSPY2A6NKD2 308 aa16.46■□□□□ 0.23
GPNMB-203ENST00000409458 DDX11L8A8MPP1 907 aa16.46■□□□□ 0.23
GPNMB-203ENST00000409458 DHX16O60231 1041 aaKnown RBP16.46■□□□□ 0.23
GPNMB-203ENST00000409458 F13A1P00488 732 aa16.46■□□□□ 0.23
GPNMB-203ENST00000409458 PDCP20941 246 aa16.46■□□□□ 0.23
GPNMB-203ENST00000409458 CDC27P30260 824 aa16.46■□□□□ 0.23
GPNMB-203ENST00000409458 CACNB3P54284 484 aa16.46■□□□□ 0.23
GPNMB-203ENST00000409458 CFAP100Q494V2 611 aa16.46■□□□□ 0.23
GPNMB-203ENST00000409458 TMTC2Q8N394 836 aa16.46■□□□□ 0.23
GPNMB-203ENST00000409458 FAM184AQ8NB25 1140 aa16.46■□□□□ 0.23
GPNMB-203ENST00000409458 MKNK2Q9HBH9 465 aa16.46■□□□□ 0.23
GPNMB-203ENST00000409458 ZBTB12Q9Y330 459 aaPredicted RBP16.46■□□□□ 0.23
GPNMB-203ENST00000409458 LTBP3Q9NS15 1303 aa16.45■□□□□ 0.22
GPNMB-203ENST00000409458 FDPSP14324 419 aaKnown RBP16.45■□□□□ 0.22
GPNMB-203ENST00000409458 ADD1P35611 737 aaKnown RBP16.45■□□□□ 0.22
GPNMB-203ENST00000409458 NT5C2P49902 561 aa16.45■□□□□ 0.22
GPNMB-203ENST00000409458 IFIT1BQ5T764 474 aaKnown RBP16.45■□□□□ 0.22
GPNMB-203ENST00000409458 ZNF654Q8IZM8 581 aa16.45■□□□□ 0.22
GPNMB-203ENST00000409458 FAM217BQ9NTX9 383 aaPredicted RBP16.45■□□□□ 0.22
GPNMB-203ENST00000409458 MYH8P13535 1937 aa16.45■□□□□ 0.22
GPNMB-203ENST00000409458 CPLX1O14810 134 aa16.44■□□□□ 0.22
GPNMB-203ENST00000409458 RASA1P20936 1047 aa16.44■□□□□ 0.22
GPNMB-203ENST00000409458 CDK8P49336 464 aa16.44■□□□□ 0.22
GPNMB-203ENST00000409458 TFAP4Q01664 338 aa16.44■□□□□ 0.22
GPNMB-203ENST00000409458 CXCL9Q07325 125 aa16.44■□□□□ 0.22
GPNMB-203ENST00000409458 MCTP1Q6DN14 999 aa16.44■□□□□ 0.22
GPNMB-203ENST00000409458 SYNE3Q6ZMZ3 975 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms