RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 SH3BP5LQ7L8J4 393 aa15.9■□□□□ 0.14
LIMS1-204ENST00000409441 MAP4K1Q92918 833 aa15.9■□□□□ 0.14
LIMS1-204ENST00000409441 DDTLA6NHG4 134 aaPredicted RBP15.9■□□□□ 0.14
LIMS1-204ENST00000409441 ADM5C9JUS6 153 aa15.9■□□□□ 0.14
LIMS1-204ENST00000409441 HSPA4P34932 840 aa15.9■□□□□ 0.14
LIMS1-204ENST00000409441 NUCB2P80303 420 aa15.9■□□□□ 0.14
LIMS1-204ENST00000409441 DLK2Q6UY11 383 aa15.9■□□□□ 0.14
LIMS1-204ENST00000409441 TNPO1Q92973 898 aaKnown RBP15.9■□□□□ 0.14
LIMS1-204ENST00000409441 TEPSINQ96N21 525 aa15.9■□□□□ 0.14
LIMS1-204ENST00000409441 GLIS2Q9BZE0 524 aaPredicted RBP15.9■□□□□ 0.14
LIMS1-204ENST00000409441 DHX36Q9H2U1 1008 aaKnown RBP15.9■□□□□ 0.14
LIMS1-204ENST00000409441 MINDY4BA8MYZ0 360 aa15.89■□□□□ 0.13
LIMS1-204ENST00000409441 CYP2D6P10635 497 aa15.89■□□□□ 0.13
LIMS1-204ENST00000409441 SLC4A8Q2Y0W8 1093 aa15.89■□□□□ 0.13
LIMS1-204ENST00000409441 SBK1Q52WX2 424 aa15.89■□□□□ 0.13
LIMS1-204ENST00000409441 CHADLQ6NUI6 762 aa15.89■□□□□ 0.13
LIMS1-204ENST00000409441 CLEC17AQ6ZS10 378 aa15.89■□□□□ 0.13
LIMS1-204ENST00000409441 TTC6Q86TZ1 520 aa15.89■□□□□ 0.13
LIMS1-204ENST00000409441 CDAN1Q8IWY9 1227 aa15.89■□□□□ 0.13
LIMS1-204ENST00000409441 CTNNA3Q9UI47 895 aa15.89■□□□□ 0.13
LIMS1-204ENST00000409441 PPP2R3BQ9Y5P8 575 aa15.89■□□□□ 0.13
LIMS1-204ENST00000409441 CYP2D7A0A087X1C5 515 aa15.88■□□□□ 0.13
LIMS1-204ENST00000409441 PLCD1P51178 756 aa15.88■□□□□ 0.13
LIMS1-204ENST00000409441 C12orf60Q5U649 245 aa15.88■□□□□ 0.13
LIMS1-204ENST00000409441 AMOTL1Q8IY63 956 aa15.88■□□□□ 0.13
LIMS1-204ENST00000409441 PI4KBQ9UBF8 816 aa15.88■□□□□ 0.13
LIMS1-204ENST00000409441 NEK4P51957 841 aa15.87■□□□□ 0.13
LIMS1-204ENST00000409441 NBPF12Q5TAG4 269 aaPredicted RBP15.87■□□□□ 0.13
LIMS1-204ENST00000409441 CSRNP1Q96S65 589 aa15.87■□□□□ 0.13
LIMS1-204ENST00000409441 ARPP21Q9UBL0 812 aaPredicted RBP15.87■□□□□ 0.13
LIMS1-204ENST00000409441 RBM8AQ9Y5S9 174 aaKnown RBP15.87■□□□□ 0.13
LIMS1-204ENST00000409441 ATRNL1Q5VV63 1379 aa15.87■□□□□ 0.13
LIMS1-204ENST00000409441 SMIM22K7EJ46 135 aa15.86■□□□□ 0.13
LIMS1-204ENST00000409441 HLA-DOAP06340 250 aa15.86■□□□□ 0.13
LIMS1-204ENST00000409441 EVX2Q03828 476 aa15.86■□□□□ 0.13
LIMS1-204ENST00000409441 SUPT20HL1Q3ZLR7 823 aa15.86■□□□□ 0.13
LIMS1-204ENST00000409441 FOXP4Q8IVH2 680 aaPredicted RBP15.86■□□□□ 0.13
LIMS1-204ENST00000409441 FOXD4L1Q9NU39 408 aa15.86■□□□□ 0.13
LIMS1-204ENST00000409441 ECM29Q5VYK3 1845 aa15.86■□□□□ 0.13
LIMS1-204ENST00000409441 TRAF5O00463 557 aa15.86■□□□□ 0.13
LIMS1-204ENST00000409441 ZNF213O14771 459 aa15.86■□□□□ 0.13
LIMS1-204ENST00000409441 TOMM70O94826 608 aa15.86■□□□□ 0.13
LIMS1-204ENST00000409441 ITGBL1O95965 494 aaPredicted RBP15.86■□□□□ 0.13
LIMS1-204ENST00000409441 HAND2P61296 217 aa15.86■□□□□ 0.13
LIMS1-204ENST00000409441 PPARAQ07869 468 aa15.86■□□□□ 0.13
LIMS1-204ENST00000409441 NECTIN1Q15223 517 aa15.86■□□□□ 0.13
LIMS1-204ENST00000409441 IMMTQ16891 758 aaKnown RBP15.86■□□□□ 0.13
LIMS1-204ENST00000409441 CDCA5Q96FF9 252 aa15.86■□□□□ 0.13
LIMS1-204ENST00000409441 ZMYM6O95789 1325 aa15.86■□□□□ 0.13
LIMS1-204ENST00000409441 POLR2AP24928 1970 aaKnown RBP15.85■□□□□ 0.13
LIMS1-204ENST00000409441 CUL4AQ13619 759 aa15.85■□□□□ 0.13
LIMS1-204ENST00000409441 MIGA2Q7L4E1 593 aa15.85■□□□□ 0.13
LIMS1-204ENST00000409441 SERPINB13Q9UIV8 391 aa15.85■□□□□ 0.13
LIMS1-204ENST00000409441 COL2A1P02458 1487 aaPredicted RBP15.84■□□□□ 0.13
LIMS1-204ENST00000409441 TRAK2O60296 914 aa15.84■□□□□ 0.13
LIMS1-204ENST00000409441 SLURP2P0DP57 97 aa15.84■□□□□ 0.13
LIMS1-204ENST00000409441 CTDSPL2Q05D32 466 aa15.84■□□□□ 0.13
LIMS1-204ENST00000409441 FMR1Q06787 632 aaKnown RBP eCLIP15.84■□□□□ 0.13
LIMS1-204ENST00000409441 SKOR2Q2VWA4 1001 aaPredicted RBP15.84■□□□□ 0.13
LIMS1-204ENST00000409441 STK11IPQ8N1F8 1099 aa15.84■□□□□ 0.13
LIMS1-204ENST00000409441 CRACR2BQ8N4Y2 399 aaPredicted RBP15.84■□□□□ 0.13
LIMS1-204ENST00000409441 SMC1BQ8NDV3 1235 aa15.84■□□□□ 0.13
LIMS1-204ENST00000409441 RBM46Q8TBY0 533 aaKnown RBP15.84■□□□□ 0.13
LIMS1-204ENST00000409441 HOOK2Q96ED9 719 aa15.84■□□□□ 0.13
LIMS1-204ENST00000409441 DYNLL2Q96FJ2 89 aa15.84■□□□□ 0.13
LIMS1-204ENST00000409441 INTS4Q96HW7 963 aaKnown RBP15.84■□□□□ 0.13
LIMS1-204ENST00000409441 EHD4Q9H223 541 aa15.84■□□□□ 0.13
LIMS1-204ENST00000409441 ANAPC4Q9UJX5 808 aa15.84■□□□□ 0.13
LIMS1-204ENST00000409441 SLC3A2P08195 630 aaKnown RBP15.83■□□□□ 0.13
LIMS1-204ENST00000409441 CYP21A2P08686 494 aa15.83■□□□□ 0.13
LIMS1-204ENST00000409441 MAP3K10Q02779 954 aa15.83■□□□□ 0.13
LIMS1-204ENST00000409441 METTL16Q86W50 562 aaKnown RBP15.83■□□□□ 0.13
LIMS1-204ENST00000409441 CDK5RAP2Q96SN8 1893 aa15.83■□□□□ 0.12
LIMS1-204ENST00000409441 FAM196BA6NMK8 535 aa15.83■□□□□ 0.12
LIMS1-204ENST00000409441 GOLGA6L22H0YM25 854 aa15.83■□□□□ 0.12
LIMS1-204ENST00000409441 SLC27A2O14975 620 aa15.83■□□□□ 0.12
LIMS1-204ENST00000409441 TBC1D12O60347 775 aa15.83■□□□□ 0.12
LIMS1-204ENST00000409441 NF2P35240 595 aa15.83■□□□□ 0.12
LIMS1-204ENST00000409441 GABPAQ06546 454 aa15.83■□□□□ 0.12
LIMS1-204ENST00000409441 CREB3L3Q68CJ9 461 aa15.83■□□□□ 0.12
LIMS1-204ENST00000409441 KCNB2Q92953 911 aa15.83■□□□□ 0.12
LIMS1-204ENST00000409441 TMX3Q96JJ7 454 aa15.83■□□□□ 0.12
LIMS1-204ENST00000409441 TRIM34Q9BYJ4 488 aa15.83■□□□□ 0.12
LIMS1-204ENST00000409441 XPO5Q9HAV4 1204 aaKnown RBP eCLIP15.83■□□□□ 0.12
LIMS1-204ENST00000409441 INCENPQ9NQS7 918 aa15.83■□□□□ 0.12
LIMS1-204ENST00000409441 HERC5Q9UII4 1024 aaKnown RBP15.83■□□□□ 0.12
LIMS1-204ENST00000409441 FOCADQ5VW36 1801 aa15.82■□□□□ 0.12
LIMS1-204ENST00000409441 RNF20Q5VTR2 975 aa15.82■□□□□ 0.12
LIMS1-204ENST00000409441 DCAF15Q66K64 600 aa15.82■□□□□ 0.12
LIMS1-204ENST00000409441 NBPF3Q9H094 633 aa15.82■□□□□ 0.12
LIMS1-204ENST00000409441 SNX14Q9Y5W7 946 aa15.82■□□□□ 0.12
LIMS1-204ENST00000409441 BAZ2AQ9UIF9 1905 aaKnown RBP15.81■□□□□ 0.12
LIMS1-204ENST00000409441 CDK8P49336 464 aa15.81■□□□□ 0.12
LIMS1-204ENST00000409441 PDE4BQ07343 736 aa15.81■□□□□ 0.12
LIMS1-204ENST00000409441 PRKG1Q13976 671 aa15.81■□□□□ 0.12
LIMS1-204ENST00000409441 AKNAD1Q5T1N1 836 aa15.81■□□□□ 0.12
LIMS1-204ENST00000409441 C16orf86Q6ZW13 317 aa15.81■□□□□ 0.12
LIMS1-204ENST00000409441 SLC44A5Q8NCS7 719 aa15.81■□□□□ 0.12
LIMS1-204ENST00000409441 ZNF408Q9H9D4 720 aa15.81■□□□□ 0.12
LIMS1-204ENST00000409441 SWAP70Q9UH65 585 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms