RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 TNIP1Q15025 636 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 DLGAP5Q15398 846 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 SBK1Q52WX2 424 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 CCDC144CPQ8IYA2 1237 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 ALDH8A1Q9H2A2 487 aaPredicted RBP4.36□□□□□ -1.71
RTN4-208ENST00000404909 KIAA1551Q9HCM1 1747 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 SH2B2O14492 632 aaPredicted RBP4.36□□□□□ -1.71
RTN4-208ENST00000404909 NMT2O60551 498 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 HDLBPQ00341 1268 aaKnown RBP4.36□□□□□ -1.71
RTN4-208ENST00000404909 PKP1Q13835 747 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 MICU3Q86XE3 530 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 IQCA1Q86XH1 822 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 ZFPM1Q8IX07 1006 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 CHMP4CQ96CF2 233 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 INTS4Q96HW7 963 aaKnown RBP4.36□□□□□ -1.71
RTN4-208ENST00000404909 MYL10Q9BUA6 226 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 VEZTQ9HBM0 779 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 CWC22Q9HCG8 908 aaKnown RBP4.36□□□□□ -1.71
RTN4-208ENST00000404909 BRPF3Q9ULD4 1205 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 MAST2Q6P0Q8 1798 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 CCDC69A6NI79 296 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 TCP10L2B9ZVM9 353 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 TSPY3P0CV98 308 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 TSPY8P0CW00 308 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 YBX3P16989 372 aaKnown RBP eCLIP4.36□□□□□ -1.712e-23■□□□□ 9.5
RTN4-208ENST00000404909 LMNB1P20700 586 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 PDIA3P30101 505 aaKnown RBP4.36□□□□□ -1.71
RTN4-208ENST00000404909 TFAP4Q01664 338 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 ST3GAL1Q11201 340 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 SCRN1Q12765 414 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 NBR1Q14596 966 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 WTAPQ15007 396 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 ZNF444Q8N0Y2 327 aaPredicted RBP4.36□□□□□ -1.71
RTN4-208ENST00000404909 AGBL3Q8NEM8 1001 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 IGDCC4Q8TDY8 1250 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 GTF3C6Q969F1 213 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 DDX11Q96FC9 970 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 TMEM87BQ96K49 555 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 GMLQ99445 158 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 MRIQ9BWK5 157 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 OSBPL5Q9H0X9 879 aaPredicted RBP4.36□□□□□ -1.71
RTN4-208ENST00000404909 TMOD2Q9NZR1 351 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 SCAF8Q9UPN6 1271 aaKnown RBP4.36□□□□□ -1.71
RTN4-208ENST00000404909 SLC12A7Q9Y666 1083 aa4.36□□□□□ -1.71
RTN4-208ENST00000404909 TNKSO95271 1327 aa4.35□□□□□ -1.71
RTN4-208ENST00000404909 SPDYE2BA6NHP3 402 aa4.35□□□□□ -1.71
RTN4-208ENST00000404909 CPLX1O14810 134 aa4.35□□□□□ -1.71
RTN4-208ENST00000404909 JAK2O60674 1132 aa4.35□□□□□ -1.71
RTN4-208ENST00000404909 HLA-DOAP06340 250 aa4.35□□□□□ -1.71
RTN4-208ENST00000404909 SPDYE6P0CI01 402 aa4.35□□□□□ -1.71
RTN4-208ENST00000404909 SLURP2P0DP57 97 aa4.35□□□□□ -1.71
RTN4-208ENST00000404909 GJB2P29033 226 aa4.35□□□□□ -1.71
RTN4-208ENST00000404909 GMPSP49915 693 aaPredicted RBP4.35□□□□□ -1.71
RTN4-208ENST00000404909 GPR162Q16538 588 aa4.35□□□□□ -1.71
RTN4-208ENST00000404909 SYNE3Q6ZMZ3 975 aa4.35□□□□□ -1.71
RTN4-208ENST00000404909 TTC6Q86TZ1 520 aa4.35□□□□□ -1.71
RTN4-208ENST00000404909 NUP133Q8WUM0 1156 aa4.35□□□□□ -1.71
RTN4-208ENST00000404909 ZSCAN10Q96SZ4 725 aaPredicted RBP4.35□□□□□ -1.71
RTN4-208ENST00000404909 AGXT2Q9BYV1 514 aa4.35□□□□□ -1.71
RTN4-208ENST00000404909 LY9Q9HBG7 655 aa4.35□□□□□ -1.71
RTN4-208ENST00000404909 ZNF287Q9HBT7 754 aa4.35□□□□□ -1.71
RTN4-208ENST00000404909 LTBP3Q9NS15 1303 aa4.35□□□□□ -1.71
RTN4-208ENST00000404909 BRCA1P38398 1863 aaKnown RBP4.35□□□□□ -1.71
RTN4-208ENST00000404909 FAM196BA6NMK8 535 aa4.35□□□□□ -1.71
RTN4-208ENST00000404909 FZD9O00144 591 aa4.35□□□□□ -1.71
RTN4-208ENST00000404909 PFKFB2O60825 505 aa4.35□□□□□ -1.71
RTN4-208ENST00000404909 PCP11498 1178 aaKnown RBP4.35□□□□□ -1.71
RTN4-208ENST00000404909 DDIT3P35638 169 aa4.35□□□□□ -1.71
RTN4-208ENST00000404909 CDK8P49336 464 aa4.35□□□□□ -1.71
RTN4-208ENST00000404909 NBPF9Q3BBW0 867 aa4.35□□□□□ -1.71
RTN4-208ENST00000404909 FOXD4L6Q3SYB3 417 aaPredicted RBP4.35□□□□□ -1.71
RTN4-208ENST00000404909 IFIT1BQ5T764 474 aaKnown RBP4.35□□□□□ -1.71
RTN4-208ENST00000404909 FOXD4L3Q6VB84 417 aaPredicted RBP4.35□□□□□ -1.71
RTN4-208ENST00000404909 CRACR2BQ8N4Y2 399 aaPredicted RBP4.35□□□□□ -1.71
RTN4-208ENST00000404909 ZNF274Q96GC6 653 aaPredicted RBP4.35□□□□□ -1.71
RTN4-208ENST00000404909 TRIM34Q9BYJ4 488 aa4.35□□□□□ -1.71
RTN4-208ENST00000404909 MYOZ2Q9NPC6 264 aa4.35□□□□□ -1.71
RTN4-208ENST00000404909 FAM198AQ9UFP1 575 aa4.35□□□□□ -1.71
RTN4-208ENST00000404909 SERPINB13Q9UIV8 391 aa4.35□□□□□ -1.71
RTN4-208ENST00000404909 MTMR7Q9Y216 660 aa4.35□□□□□ -1.71
RTN4-208ENST00000404909 DDX52Q9Y2R4 599 aaKnown RBP eCLIP4.35□□□□□ -1.715e-6■□□□□ 9.7
RTN4-208ENST00000404909 WDR19Q8NEZ3 1342 aa4.35□□□□□ -1.71
RTN4-208ENST00000404909 ZNF541Q9H0D2 1346 aa4.35□□□□□ -1.71
RTN4-208ENST00000404909 DDTLA6NHG4 134 aaPredicted RBP4.35□□□□□ -1.71
RTN4-208ENST00000404909 ZBTB43O43298 467 aa4.35□□□□□ -1.71
RTN4-208ENST00000404909 MYO1BO43795 1136 aa4.35□□□□□ -1.71
RTN4-208ENST00000404909 ORC4O43929 436 aa4.35□□□□□ -1.71
RTN4-208ENST00000404909 FGRP09769 529 aa4.35□□□□□ -1.71
RTN4-208ENST00000404909 METAP2P50579 478 aaKnown RBP eCLIP4.35□□□□□ -1.71
RTN4-208ENST00000404909 FOSBP53539 338 aa4.35□□□□□ -1.71
RTN4-208ENST00000404909 TBC1D10BQ4KMP7 808 aaPredicted RBP4.35□□□□□ -1.71
RTN4-208ENST00000404909 APOA5Q6Q788 366 aa4.35□□□□□ -1.71
RTN4-208ENST00000404909 SAMD7Q7Z3H4 446 aa4.35□□□□□ -1.71
RTN4-208ENST00000404909 MICALL2Q8IY33 904 aa4.35□□□□□ -1.71
RTN4-208ENST00000404909 ENAHQ8N8S7 591 aaPredicted RBP4.35□□□□□ -1.71
RTN4-208ENST00000404909 RNF181Q9P0P0 153 aa4.35□□□□□ -1.71
RTN4-208ENST00000404909 CNOT7Q9UIV1 285 aaKnown RBP4.35□□□□□ -1.71
RTN4-208ENST00000404909 CIZ1Q9ULV3 898 aaPredicted RBP4.35□□□□□ -1.71
RTN4-208ENST00000404909 STX8Q9UNK0 236 aa4.35□□□□□ -1.71
RTN4-208ENST00000404909 FER1L6Q2WGJ9 1857 aa4.34□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms