RNA–Protein interactions for RNA: ENST00000399275.6

SMAD9-203, Transcript of SMAD family member 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMAD9, Length 5,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-203ENST00000399275 MED4Q9NPJ6 270 aa10.69□□□□□ -0.7
SMAD9-203ENST00000399275 TTF2Q9UNY4 1162 aaKnown RBP10.69□□□□□ -0.7
SMAD9-203ENST00000399275 PLCH2O75038 1416 aa10.68□□□□□ -0.7
SMAD9-203ENST00000399275 PSDA5PKW4 1024 aaPredicted RBP10.68□□□□□ -0.7
SMAD9-203ENST00000399275 ENO4A6NNW6 628 aa10.68□□□□□ -0.7
SMAD9-203ENST00000399275 RAD21O60216 631 aa10.68□□□□□ -0.7
SMAD9-203ENST00000399275 CTNNA2P26232 953 aa10.68□□□□□ -0.7
SMAD9-203ENST00000399275 FANCCQ00597 558 aa10.68□□□□□ -0.7
SMAD9-203ENST00000399275 MTRF1LQ9UGC7 380 aaKnown RBP10.68□□□□□ -0.7
SMAD9-203ENST00000399275 PLXNC1O60486 1568 aa10.68□□□□□ -0.7
SMAD9-203ENST00000399275 PTPRTO14522 1441 aa10.68□□□□□ -0.7
SMAD9-203ENST00000399275 ARHGEF9O43307 516 aa10.68□□□□□ -0.7
SMAD9-203ENST00000399275 BAG2O95816 211 aa10.68□□□□□ -0.7
SMAD9-203ENST00000399275 PHBP35232 272 aa10.68□□□□□ -0.7
SMAD9-203ENST00000399275 NLRP12P59046 1061 aa10.68□□□□□ -0.7
SMAD9-203ENST00000399275 NUTM2AQ8IVF1 878 aaPredicted RBP10.68□□□□□ -0.7
SMAD9-203ENST00000399275 MSANTD4Q8NCY6 345 aa10.68□□□□□ -0.7
SMAD9-203ENST00000399275 TDRD7Q8NHU6 1098 aaKnown RBP10.68□□□□□ -0.7
SMAD9-203ENST00000399275 KLF18A0A0U1RQI7 1052 aa10.68□□□□□ -0.7
SMAD9-203ENST00000399275 APOEP02649 317 aa10.68□□□□□ -0.7
SMAD9-203ENST00000399275 EEF2P13639 858 aaKnown RBP10.68□□□□□ -0.7
SMAD9-203ENST00000399275 ESRRGP62508 458 aa10.68□□□□□ -0.7
SMAD9-203ENST00000399275 SLC44A4Q53GD3 710 aa10.68□□□□□ -0.7
SMAD9-203ENST00000399275 DHX32Q7L7V1 743 aaKnown RBP10.68□□□□□ -0.7
SMAD9-203ENST00000399275 ARL10Q8N8L6 244 aa10.68□□□□□ -0.7
SMAD9-203ENST00000399275 TCP11Q8WWU5 503 aa10.68□□□□□ -0.7
SMAD9-203ENST00000399275 EXOC4Q96A65 974 aa10.68□□□□□ -0.7
SMAD9-203ENST00000399275 MYD88Q99836 296 aa10.68□□□□□ -0.7
SMAD9-203ENST00000399275 TNNC1P63316 161 aa10.68□□□□□ -0.7
SMAD9-203ENST00000399275 NAPGQ99747 312 aaPredicted RBP10.68□□□□□ -0.7
SMAD9-203ENST00000399275 SH3GL2Q99962 352 aa10.68□□□□□ -0.7
SMAD9-203ENST00000399275 BIN2Q9UBW5 565 aaPredicted RBP10.68□□□□□ -0.7
SMAD9-203ENST00000399275 NEK2P51955 445 aa10.67□□□□□ -0.7
SMAD9-203ENST00000399275 SPATA17Q96L03 361 aa10.67□□□□□ -0.7
SMAD9-203ENST00000399275 ALG1Q9BT22 464 aa10.67□□□□□ -0.7
SMAD9-203ENST00000399275 PHACTR3Q96KR7 559 aa10.67□□□□□ -0.7
SMAD9-203ENST00000399275 TSGA10Q9BZW7 698 aa10.67□□□□□ -0.7
SMAD9-203ENST00000399275 RNF41Q9H4P4 317 aaPredicted RBP10.67□□□□□ -0.7
SMAD9-203ENST00000399275 NOP53Q9NZM5 478 aaKnown RBP10.67□□□□□ -0.7
SMAD9-203ENST00000399275 PRDM15P57071 1507 aaPredicted RBP10.67□□□□□ -0.7
SMAD9-203ENST00000399275 EIF3CLB5ME19 914 aaKnown RBP10.67□□□□□ -0.7
SMAD9-203ENST00000399275 RAPGEF3O95398 923 aa10.67□□□□□ -0.7
SMAD9-203ENST00000399275 FBXO18Q8NFZ0 1043 aa10.67□□□□□ -0.7
SMAD9-203ENST00000399275 EIF3CQ99613 913 aaKnown RBP10.67□□□□□ -0.7
SMAD9-203ENST00000399275 BCAP29Q9UHQ4 241 aa10.67□□□□□ -0.7
SMAD9-203ENST00000399275 CLASP1Q7Z460 1538 aa10.67□□□□□ -0.7
SMAD9-203ENST00000399275 MTIF2P46199 727 aaKnown RBP10.67□□□□□ -0.7
SMAD9-203ENST00000399275 SLC27A2O14975 620 aa10.66□□□□□ -0.7
SMAD9-203ENST00000399275 KDM1AO60341 852 aa10.66□□□□□ -0.7
SMAD9-203ENST00000399275 IFT88Q13099 833 aa10.66□□□□□ -0.7
SMAD9-203ENST00000399275 TRIM14Q14142 442 aa10.66□□□□□ -0.7
SMAD9-203ENST00000399275 USP37Q86T82 979 aa10.66□□□□□ -0.7
SMAD9-203ENST00000399275 TMEM87AQ8NBN3 555 aa10.66□□□□□ -0.7
SMAD9-203ENST00000399275 CCHCR1Q8TD31 782 aa10.66□□□□□ -0.7
SMAD9-203ENST00000399275 NAPBQ9H115 298 aa10.66□□□□□ -0.7
SMAD9-203ENST00000399275 ANLNQ9NQW6 1124 aa10.66□□□□□ -0.7
SMAD9-203ENST00000399275 GUCA1BQ9UMX6 200 aa10.66□□□□□ -0.7
SMAD9-203ENST00000399275 IFIT3O14879 490 aaKnown RBP10.66□□□□□ -0.7
SMAD9-203ENST00000399275 ATP2A1O14983 1001 aa10.66□□□□□ -0.7
SMAD9-203ENST00000399275 RNF40O75150 1001 aa10.66□□□□□ -0.7
SMAD9-203ENST00000399275 IDH1O75874 414 aaKnown RBP10.66□□□□□ -0.7
SMAD9-203ENST00000399275 ELF1P32519 619 aa10.66□□□□□ -0.7
SMAD9-203ENST00000399275 CABP4P57796 275 aa10.66□□□□□ -0.7
SMAD9-203ENST00000399275 LRMPQ12912 555 aa10.66□□□□□ -0.7
SMAD9-203ENST00000399275 FLOT2Q14254 428 aa10.66□□□□□ -0.7
SMAD9-203ENST00000399275 OSBPL9Q96SU4 736 aa10.66□□□□□ -0.7
SMAD9-203ENST00000399275 SYNCQ9H7C4 482 aa10.66□□□□□ -0.7
SMAD9-203ENST00000399275 DONSONQ9NYP3 566 aa10.66□□□□□ -0.7
SMAD9-203ENST00000399275 NBPF7P0C2Y1 421 aaPredicted RBP10.66□□□□□ -0.7
SMAD9-203ENST00000399275 NOP14P78316 857 aaKnown RBP10.66□□□□□ -0.7
SMAD9-203ENST00000399275 CDC37L1Q7L3B6 337 aa10.66□□□□□ -0.7
SMAD9-203ENST00000399275 CROCCP2Q86T23 111 aa10.66□□□□□ -0.7
SMAD9-203ENST00000399275 ST13P4Q8IZP2 240 aaPredicted RBP10.66□□□□□ -0.7
SMAD9-203ENST00000399275 PLVAPQ9BX97 442 aa10.66□□□□□ -0.7
SMAD9-203ENST00000399275 SPTLC3Q9NUV7 552 aa10.66□□□□□ -0.7
SMAD9-203ENST00000399275 MTMR6Q9Y217 621 aa10.66□□□□□ -0.7
SMAD9-203ENST00000399275 KRT10P13645 584 aa10.66□□□□□ -0.7
SMAD9-203ENST00000399275 TRIM60Q495X7 471 aa10.66□□□□□ -0.7
SMAD9-203ENST00000399275 KCNH5Q8NCM2 988 aa10.66□□□□□ -0.7
SMAD9-203ENST00000399275 MRPL46Q9H2W6 279 aaKnown RBP10.66□□□□□ -0.7
SMAD9-203ENST00000399275 OSBPL3Q9H4L5 887 aa10.66□□□□□ -0.7
SMAD9-203ENST00000399275 CEP170Q5SW79 1584 aa10.66□□□□□ -0.7
SMAD9-203ENST00000399275 GOLGA8KD6RF30 607 aa10.66□□□□□ -0.7
SMAD9-203ENST00000399275 ETF1P62495 437 aaKnown RBP10.66□□□□□ -0.7
SMAD9-203ENST00000399275 TTF1Q15361 905 aaPredicted RBP10.66□□□□□ -0.7
SMAD9-203ENST00000399275 ACTR5Q9H9F9 607 aaPredicted RBP10.66□□□□□ -0.7
SMAD9-203ENST00000399275 ABCF2Q9UG63 623 aa10.66□□□□□ -0.7
SMAD9-203ENST00000399275 KIAA0232Q92628 1395 aa10.65□□□□□ -0.7
SMAD9-203ENST00000399275 SBNO2Q9Y2G9 1366 aa10.65□□□□□ -0.7
SMAD9-203ENST00000399275 MARCKSP29966 332 aaPredicted RBP10.65□□□□□ -0.7
SMAD9-203ENST00000399275 SF3A3Q12874 501 aaKnown RBP eCLIP10.65□□□□□ -0.7
SMAD9-203ENST00000399275 RRAGBQ5VZM2 374 aa10.65□□□□□ -0.7
SMAD9-203ENST00000399275 TAOK1Q7L7X3 1001 aa10.65□□□□□ -0.7
SMAD9-203ENST00000399275 ARHGAP18Q8N392 663 aa10.65□□□□□ -0.7
SMAD9-203ENST00000399275 TMCO5AQ8N6Q1 288 aa10.65□□□□□ -0.7
SMAD9-203ENST00000399275 KLHL14Q9P2G3 628 aa10.65□□□□□ -0.7
SMAD9-203ENST00000399275 ZNF518AQ6AHZ1 1483 aa10.65□□□□□ -0.7
SMAD9-203ENST00000399275 CPA1P15085 419 aa10.65□□□□□ -0.7
SMAD9-203ENST00000399275 AMPD3Q01432 767 aa10.65□□□□□ -0.7
SMAD9-203ENST00000399275 MYSM1Q5VVJ2 828 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms