RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 LDHBP07195 334 aaKnown RBP11.43□□□□□ -0.58
LIMCH1-203ENST00000396595 TNFAIP3P21580 790 aa11.43□□□□□ -0.58
LIMCH1-203ENST00000396595 PPFIA1Q13136 1202 aa11.43□□□□□ -0.58
LIMCH1-203ENST00000396595 PAK2Q13177 524 aa11.43□□□□□ -0.58
LIMCH1-203ENST00000396595 LRRC59Q96AG4 307 aaKnown RBP11.43□□□□□ -0.58
LIMCH1-203ENST00000396595 ZKSCAN3Q9BRR0 538 aa11.43□□□□□ -0.58
LIMCH1-203ENST00000396595 TRIM4Q9C037 500 aa11.43□□□□□ -0.58
LIMCH1-203ENST00000396595 TMEM63CQ9P1W3 806 aa11.43□□□□□ -0.58
LIMCH1-203ENST00000396595 TSKSQ9UJT2 592 aa11.43□□□□□ -0.58
LIMCH1-203ENST00000396595 CETN3O15182 167 aa11.43□□□□□ -0.58
LIMCH1-203ENST00000396595 ASIC2Q16515 512 aa11.43□□□□□ -0.58
LIMCH1-203ENST00000396595 SLC9C1Q4G0N8 1177 aa11.43□□□□□ -0.58
LIMCH1-203ENST00000396595 KBTBD3Q8NAB2 608 aa11.43□□□□□ -0.58
LIMCH1-203ENST00000396595 GBP5Q96PP8 586 aa11.43□□□□□ -0.58
LIMCH1-203ENST00000396595 DBNDD2Q9BQY9 259 aa11.43□□□□□ -0.58
LIMCH1-203ENST00000396595 NCOA5Q9HCD5 579 aaKnown RBP11.43□□□□□ -0.58
LIMCH1-203ENST00000396595 ZMYM3Q14202 1370 aa11.43□□□□□ -0.58
LIMCH1-203ENST00000396595 B4DLN1 442 aa11.43□□□□□ -0.58
LIMCH1-203ENST00000396595 KIFAP3Q92845 792 aa11.43□□□□□ -0.58
LIMCH1-203ENST00000396595 ZC4H2Q9NQZ6 224 aa11.43□□□□□ -0.58
LIMCH1-203ENST00000396595 MKRN1Q9UHC7 482 aaKnown RBP11.43□□□□□ -0.58
LIMCH1-203ENST00000396595 DENND2AQ9ULE3 1009 aa11.43□□□□□ -0.58
LIMCH1-203ENST00000396595 UTP11Q9Y3A2 253 aaKnown RBP11.43□□□□□ -0.58
LIMCH1-203ENST00000396595 F8W031 263 aaPredicted RBP11.43□□□□□ -0.58
LIMCH1-203ENST00000396595 TTC38Q5R3I4 469 aa11.43□□□□□ -0.58
LIMCH1-203ENST00000396595 MRFAP1L1Q96HT8 127 aa11.43□□□□□ -0.58
LIMCH1-203ENST00000396595 CHL1O00533 1208 aa11.42□□□□□ -0.58
LIMCH1-203ENST00000396595 ERCC5P28715 1186 aaPredicted RBP11.42□□□□□ -0.58
LIMCH1-203ENST00000396595 MAGEA1P43355 309 aa11.42□□□□□ -0.58
LIMCH1-203ENST00000396595 TTC6Q86TZ1 520 aa11.42□□□□□ -0.58
LIMCH1-203ENST00000396595 SIRT1Q96EB6 747 aa11.42□□□□□ -0.58
LIMCH1-203ENST00000396595 RPGRIP1Q96KN7 1286 aa11.42□□□□□ -0.58
LIMCH1-203ENST00000396595 FAM169AQ9Y6X4 670 aa11.42□□□□□ -0.58
LIMCH1-203ENST00000396595 KIF24Q5T7B8 1368 aa11.42□□□□□ -0.58
LIMCH1-203ENST00000396595 NDC80O14777 642 aa11.42□□□□□ -0.58
LIMCH1-203ENST00000396595 ERCC3P19447 782 aa11.42□□□□□ -0.58
LIMCH1-203ENST00000396595 ARL1P40616 181 aaPredicted RBP11.42□□□□□ -0.58
LIMCH1-203ENST00000396595 TPTE2Q6XPS3 522 aa11.42□□□□□ -0.58
LIMCH1-203ENST00000396595 FAM227BQ96M60 508 aa11.42□□□□□ -0.58
LIMCH1-203ENST00000396595 METTL22Q9BUU2 404 aaPredicted RBP11.42□□□□□ -0.58
LIMCH1-203ENST00000396595 TTC36A6NLP5 189 aa11.42□□□□□ -0.58
LIMCH1-203ENST00000396595 ZNF500O60304 480 aaPredicted RBP11.42□□□□□ -0.58
LIMCH1-203ENST00000396595 TIMM10P62072 90 aa11.42□□□□□ -0.58
LIMCH1-203ENST00000396595 POSTNQ15063 836 aa11.42□□□□□ -0.58
LIMCH1-203ENST00000396595 CFAP157Q5JU67 520 aa11.42□□□□□ -0.58
LIMCH1-203ENST00000396595 CDC37L1Q7L3B6 337 aa11.42□□□□□ -0.58
LIMCH1-203ENST00000396595 OGFOD1Q8N543 542 aa11.42□□□□□ -0.58
LIMCH1-203ENST00000396595 OAS2P29728 719 aaKnown RBP11.42□□□□□ -0.58
LIMCH1-203ENST00000396595 PSMC4P43686 418 aa11.42□□□□□ -0.58
LIMCH1-203ENST00000396595 HAUS3Q68CZ6 603 aa11.42□□□□□ -0.58
LIMCH1-203ENST00000396595 LRRC43Q8N309 656 aa11.42□□□□□ -0.58
LIMCH1-203ENST00000396595 PLBD2Q8NHP8 589 aa11.42□□□□□ -0.58
LIMCH1-203ENST00000396595 IQCDQ96DY2 449 aa11.42□□□□□ -0.58
LIMCH1-203ENST00000396595 CCDC51Q96ER9 411 aa11.42□□□□□ -0.58
LIMCH1-203ENST00000396595 IL2RBP14784 551 aa11.42□□□□□ -0.58
LIMCH1-203ENST00000396595 PEX19P40855 299 aa11.42□□□□□ -0.58
LIMCH1-203ENST00000396595 FYB2Q5VWT5 728 aa11.42□□□□□ -0.58
LIMCH1-203ENST00000396595 PIK3AP1Q6ZUJ8 805 aa11.42□□□□□ -0.58
LIMCH1-203ENST00000396595 UBL4BQ8N7F7 174 aa11.42□□□□□ -0.58
LIMCH1-203ENST00000396595 MICAL1Q8TDZ2 1067 aa11.42□□□□□ -0.58
LIMCH1-203ENST00000396595 GLT8D2Q9H1C3 349 aa11.42□□□□□ -0.58
LIMCH1-203ENST00000396595 MAP3K19Q56UN5 1328 aa11.42□□□□□ -0.58
LIMCH1-203ENST00000396595 SSH2Q76I76 1423 aa11.41□□□□□ -0.58
LIMCH1-203ENST00000396595 GPAA1O43292 621 aa11.41□□□□□ -0.58
LIMCH1-203ENST00000396595 CLUL1Q15846 466 aa11.41□□□□□ -0.58
LIMCH1-203ENST00000396595 PIK3R5Q8WYR1 880 aa11.41□□□□□ -0.58
LIMCH1-203ENST00000396595 SYCP2Q9BX26 1530 aa11.41□□□□□ -0.58
LIMCH1-203ENST00000396595 BRD3Q15059 726 aa11.41□□□□□ -0.58
LIMCH1-203ENST00000396595 KRT40Q6A162 431 aa11.41□□□□□ -0.58
LIMCH1-203ENST00000396595 USH1CQ9Y6N9 552 aa11.41□□□□□ -0.58
LIMCH1-203ENST00000396595 TRPM2O94759 1503 aa11.41□□□□□ -0.58
LIMCH1-203ENST00000396595 HOXC9P31274 260 aa11.41□□□□□ -0.58
LIMCH1-203ENST00000396595 CCDC84Q86UT8 332 aaPredicted RBP11.41□□□□□ -0.58
LIMCH1-203ENST00000396595 ZC3H12CQ9C0D7 883 aaKnown RBP11.41□□□□□ -0.58
LIMCH1-203ENST00000396595 BCL2L12Q9HB09 334 aa11.41□□□□□ -0.58
LIMCH1-203ENST00000396595 V9GY48 417 aaPredicted RBP11.41□□□□□ -0.58
LIMCH1-203ENST00000396595 MTMR3Q13615 1198 aa11.41□□□□□ -0.58
LIMCH1-203ENST00000396595 IP6K1Q92551 441 aa11.41□□□□□ -0.58
LIMCH1-203ENST00000396595 CABS1Q96KC9 395 aa11.41□□□□□ -0.58
LIMCH1-203ENST00000396595 TAB2Q9NYJ8 693 aa11.41□□□□□ -0.58
LIMCH1-203ENST00000396595 TPX2Q9ULW0 747 aaKnown RBP11.41□□□□□ -0.58
LIMCH1-203ENST00000396595 MAP3K7CLP57077 242 aa11.4□□□□□ -0.58
LIMCH1-203ENST00000396595 MTX1Q13505 466 aa11.4□□□□□ -0.58
LIMCH1-203ENST00000396595 PPP2R5AQ15172 486 aa11.4□□□□□ -0.58
LIMCH1-203ENST00000396595 PRR16Q569H4 304 aa11.4□□□□□ -0.58
LIMCH1-203ENST00000396595 CNPY4Q8N129 248 aa11.4□□□□□ -0.58
LIMCH1-203ENST00000396595 TRIM35Q9UPQ4 493 aa11.4□□□□□ -0.58
LIMCH1-203ENST00000396595 ATP10BO94823 1461 aa11.4□□□□□ -0.58
LIMCH1-203ENST00000396595 CALUO43852 315 aaPredicted RBP11.4□□□□□ -0.58
LIMCH1-203ENST00000396595 WDR44Q5JSH3 913 aa11.4□□□□□ -0.58
LIMCH1-203ENST00000396595 OTUD7BQ6GQQ9 843 aa11.4□□□□□ -0.58
LIMCH1-203ENST00000396595 TAOK1Q7L7X3 1001 aa11.4□□□□□ -0.58
LIMCH1-203ENST00000396595 NEDD9Q14511 834 aa11.4□□□□□ -0.58
LIMCH1-203ENST00000396595 PUM3Q15397 648 aaKnown RBP11.4□□□□□ -0.58
LIMCH1-203ENST00000396595 CFAP221Q4G0U5 840 aa11.4□□□□□ -0.58
LIMCH1-203ENST00000396595 ZNF354CQ86Y25 554 aa11.4□□□□□ -0.58
LIMCH1-203ENST00000396595 NUCKS1Q9H1E3 243 aaKnown RBP11.4□□□□□ -0.58
LIMCH1-203ENST00000396595 WWC3Q9ULE0 1092 aa11.4□□□□□ -0.58
LIMCH1-203ENST00000396595 MAPK8IP1Q9UQF2 711 aa11.4□□□□□ -0.58
LIMCH1-203ENST00000396595 IL13P35225 146 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms