RNA–Protein interactions for RNA: ENST00000395802.7

VAPB-202, Transcript of VAMP associated protein B and C, humanhuman

TSL 1 (best) BASIC

Gene VAPB, Length 1,834 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-202ENST00000395802 Q6ZUG5 572 aa16.12■□□□□ 0.17
VAPB-202ENST00000395802 FAM83AQ86UY5 434 aa16.12■□□□□ 0.17
VAPB-202ENST00000395802 ZSCAN29Q8IWY8 852 aaPredicted RBP16.12■□□□□ 0.17
VAPB-202ENST00000395802 ZNF444Q8N0Y2 327 aaPredicted RBP16.12■□□□□ 0.17
VAPB-202ENST00000395802 TMTC2Q8N394 836 aa16.12■□□□□ 0.17
VAPB-202ENST00000395802 ZBED3Q96IU2 234 aaPredicted RBP16.12■□□□□ 0.17
VAPB-202ENST00000395802 EHD4Q9H223 541 aa16.12■□□□□ 0.17
VAPB-202ENST00000395802 ZNF70Q9UC06 446 aaPredicted RBP16.12■□□□□ 0.17
VAPB-202ENST00000395802 SERPINB13Q9UIV8 391 aa16.12■□□□□ 0.17
VAPB-202ENST00000395802 COL2A1P02458 1487 aaPredicted RBP16.12■□□□□ 0.17
VAPB-202ENST00000395802 LAMB1P07942 1786 aa16.12■□□□□ 0.17
VAPB-202ENST00000395802 B4E1Z4 1266 aa16.12■□□□□ 0.17
VAPB-202ENST00000395802 KDM4AO75164 1064 aa16.12■□□□□ 0.17
VAPB-202ENST00000395802 CPA1P15085 419 aa16.12■□□□□ 0.17
VAPB-202ENST00000395802 UBAC1Q9BSL1 405 aa16.12■□□□□ 0.17
VAPB-202ENST00000395802 TRIM34Q9BYJ4 488 aa16.12■□□□□ 0.17
VAPB-202ENST00000395802 ECM29Q5VYK3 1845 aa16.12■□□□□ 0.17
VAPB-202ENST00000395802 NEDD4P46934 1319 aa16.11■□□□□ 0.17
VAPB-202ENST00000395802 CYP2D7A0A087X1C5 515 aa16.11■□□□□ 0.17
VAPB-202ENST00000395802 RANBP6O60518 1105 aaKnown RBP16.11■□□□□ 0.17
VAPB-202ENST00000395802 PLCD1P51178 756 aa16.11■□□□□ 0.17
VAPB-202ENST00000395802 NFIAQ12857 509 aa16.11■□□□□ 0.17
VAPB-202ENST00000395802 KIF4BQ2VIQ3 1234 aa16.11■□□□□ 0.17
VAPB-202ENST00000395802 C16orf86Q6ZW13 317 aa16.11■□□□□ 0.17
VAPB-202ENST00000395802 FOXP4Q8IVH2 680 aaPredicted RBP16.11■□□□□ 0.17
VAPB-202ENST00000395802 FAM151AQ8WW52 585 aa16.11■□□□□ 0.17
VAPB-202ENST00000395802 AGXT2Q9BYV1 514 aa16.11■□□□□ 0.17
VAPB-202ENST00000395802 DDX4Q9NQI0 724 aaKnown RBP16.11■□□□□ 0.17
VAPB-202ENST00000395802 ZSWIM5Q9P217 1185 aa16.11■□□□□ 0.17
VAPB-202ENST00000395802 CDK5RAP2Q96SN8 1893 aa16.11■□□□□ 0.17
VAPB-202ENST00000395802 VEZTQ9HBM0 779 aa16.1■□□□□ 0.17
VAPB-202ENST00000395802 FAM198AQ9UFP1 575 aa16.1■□□□□ 0.17
VAPB-202ENST00000395802 ANGEL1Q9UNK9 670 aaKnown RBP16.1■□□□□ 0.17
VAPB-202ENST00000395802 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.1■□□□□ 0.17
VAPB-202ENST00000395802 PCDHAC2Q9Y5I4 1007 aa16.1■□□□□ 0.17
VAPB-202ENST00000395802 MYH1P12882 1939 aa16.1■□□□□ 0.17
VAPB-202ENST00000395802 ATRNL1Q5VV63 1379 aa16.1■□□□□ 0.17
VAPB-202ENST00000395802 TSPY2A6NKD2 308 aa16.1■□□□□ 0.17
VAPB-202ENST00000395802 CYP2D6P10635 497 aa16.1■□□□□ 0.17
VAPB-202ENST00000395802 LIFRP42702 1097 aa16.1■□□□□ 0.17
VAPB-202ENST00000395802 TCP10Q12799 353 aa16.1■□□□□ 0.17
VAPB-202ENST00000395802 STK11IPQ8N1F8 1099 aa16.1■□□□□ 0.17
VAPB-202ENST00000395802 CRACR2BQ8N4Y2 399 aaPredicted RBP16.1■□□□□ 0.17
VAPB-202ENST00000395802 TMX3Q96JJ7 454 aa16.1■□□□□ 0.17
VAPB-202ENST00000395802 CLRN2A0PK11 232 aa16.09■□□□□ 0.17
VAPB-202ENST00000395802 CACNB3P54284 484 aa16.09■□□□□ 0.17
VAPB-202ENST00000395802 NBPF9Q3BBW0 867 aa16.09■□□□□ 0.17
VAPB-202ENST00000395802 PPP4R3BQ5MIZ7 849 aa16.09■□□□□ 0.17
VAPB-202ENST00000395802 RBM26Q5T8P6 1007 aaKnown RBP16.09■□□□□ 0.17
VAPB-202ENST00000395802 BRF1Q92994 677 aa16.09■□□□□ 0.17
VAPB-202ENST00000395802 ADARB2Q9NS39 739 aaKnown RBP16.09■□□□□ 0.17
VAPB-202ENST00000395802 ADAMTSL1Q8N6G6 1762 aa16.09■□□□□ 0.17
VAPB-202ENST00000395802 DDX60LQ5H9U9 1706 aaKnown RBP16.09■□□□□ 0.17
VAPB-202ENST00000395802 TCP10L2B9ZVM9 353 aa16.08■□□□□ 0.17
VAPB-202ENST00000395802 IFIT3O14879 490 aaKnown RBP16.08■□□□□ 0.17
VAPB-202ENST00000395802 DDNO94850 711 aaPredicted RBP16.08■□□□□ 0.17
VAPB-202ENST00000395802 TSPY3P0CV98 308 aa16.08■□□□□ 0.17
VAPB-202ENST00000395802 TSPY8P0CW00 308 aa16.08■□□□□ 0.17
VAPB-202ENST00000395802 CDK8P49336 464 aa16.08■□□□□ 0.17
VAPB-202ENST00000395802 TOB2Q14106 344 aaPredicted RBP16.08■□□□□ 0.17
VAPB-202ENST00000395802 TBC1D10BQ4KMP7 808 aaPredicted RBP16.08■□□□□ 0.17
VAPB-202ENST00000395802 TMEM67Q5HYA8 995 aa16.08■□□□□ 0.17
VAPB-202ENST00000395802 SYNE3Q6ZMZ3 975 aa16.08■□□□□ 0.17
VAPB-202ENST00000395802 SAMD7Q7Z3H4 446 aa16.08■□□□□ 0.17
VAPB-202ENST00000395802 ZNF274Q96GC6 653 aaPredicted RBP16.08■□□□□ 0.17
VAPB-202ENST00000395802 INTS4Q96HW7 963 aaKnown RBP16.08■□□□□ 0.17
VAPB-202ENST00000395802 TCEANC2Q96MN5 208 aa16.08■□□□□ 0.17
VAPB-202ENST00000395802 HERC5Q9UII4 1024 aaKnown RBP16.08■□□□□ 0.17
VAPB-202ENST00000395802 PRDM1O75626 825 aa16.08■□□□□ 0.16
VAPB-202ENST00000395802 EVCP57679 992 aa16.08■□□□□ 0.16
VAPB-202ENST00000395802 GABPAQ06546 454 aa16.08■□□□□ 0.16
VAPB-202ENST00000395802 WTAPQ15007 396 aa16.08■□□□□ 0.16
VAPB-202ENST00000395802 SLC4A8Q2Y0W8 1093 aa16.08■□□□□ 0.16
VAPB-202ENST00000395802 NOL8Q76FK4 1167 aaKnown RBP16.08■□□□□ 0.16
VAPB-202ENST00000395802 CHST3Q7LGC8 479 aa16.08■□□□□ 0.16
VAPB-202ENST00000395802 APOBEC3FQ8IUX4 373 aaKnown RBP16.08■□□□□ 0.16
VAPB-202ENST00000395802 HOOK2Q96ED9 719 aa16.08■□□□□ 0.16
VAPB-202ENST00000395802 L3MBTL3Q96JM7 780 aaPredicted RBP16.08■□□□□ 0.16
VAPB-202ENST00000395802 CSRNP1Q96S65 589 aa16.08■□□□□ 0.16
VAPB-202ENST00000395802 ZSCAN10Q96SZ4 725 aaPredicted RBP16.08■□□□□ 0.16
VAPB-202ENST00000395802 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.08■□□□□ 0.16
VAPB-202ENST00000395802 IQCA1LA6NCM1 817 aa16.07■□□□□ 0.16
VAPB-202ENST00000395802 GLTPD2A6NH11 291 aa16.07■□□□□ 0.16
VAPB-202ENST00000395802 DHX16O60231 1041 aaKnown RBP16.07■□□□□ 0.16
VAPB-202ENST00000395802 ANTXR2P58335 489 aa16.07■□□□□ 0.16
VAPB-202ENST00000395802 NFXL1Q6ZNB6 911 aa16.07■□□□□ 0.16
VAPB-202ENST00000395802 CYB5R4Q7L1T6 521 aa16.07■□□□□ 0.16
VAPB-202ENST00000395802 SGMS1Q86VZ5 419 aa16.07■□□□□ 0.16
VAPB-202ENST00000395802 DYNLL2Q96FJ2 89 aa16.07■□□□□ 0.16
VAPB-202ENST00000395802 CCDC17Q96LX7 622 aa16.07■□□□□ 0.16
VAPB-202ENST00000395802 LRRC2Q9BYS8 371 aa16.07■□□□□ 0.16
VAPB-202ENST00000395802 SLKQ9H2G2 1235 aaPredicted RBP16.07■□□□□ 0.16
VAPB-202ENST00000395802 INCENPQ9NQS7 918 aa16.07■□□□□ 0.16
VAPB-202ENST00000395802 TCP11L1Q9NUJ3 509 aa16.07■□□□□ 0.16
VAPB-202ENST00000395802 CCDC69A6NI79 296 aa16.06■□□□□ 0.16
VAPB-202ENST00000395802 SH2B2O14492 632 aaPredicted RBP16.06■□□□□ 0.16
VAPB-202ENST00000395802 TFAP4Q01664 338 aa16.06■□□□□ 0.16
VAPB-202ENST00000395802 IGDCC4Q8TDY8 1250 aa16.06■□□□□ 0.16
VAPB-202ENST00000395802 CWC22Q9HCG8 908 aaKnown RBP16.06■□□□□ 0.16
VAPB-202ENST00000395802 TPCN1Q9ULQ1 816 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms