RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 NUP133Q8WUM0 1156 aa23.69■■□□□ 1.38
CLK3-202ENST00000395066 DNAI1Q9UI46 699 aa23.69■■□□□ 1.38
CLK3-202ENST00000395066 CUTAO60888 179 aa23.69■■□□□ 1.38
CLK3-202ENST00000395066 FMNL1O95466 1100 aaPredicted RBP23.69■■□□□ 1.38
CLK3-202ENST00000395066 AKNAD1Q5T1N1 836 aa23.69■■□□□ 1.38
CLK3-202ENST00000395066 OLFM4Q6UX06 510 aa23.69■■□□□ 1.38
CLK3-202ENST00000395066 MFSD6Q6ZSS7 791 aa23.69■■□□□ 1.38
CLK3-202ENST00000395066 KRI1Q8N9T8 703 aaKnown RBP23.69■■□□□ 1.38
CLK3-202ENST00000395066 OXER1Q8TDS5 423 aa23.69■■□□□ 1.38
CLK3-202ENST00000395066 PCDHB6Q9Y5E3 794 aa23.69■■□□□ 1.38
CLK3-202ENST00000395066 SLIT2O94813 1529 aa23.69■■□□□ 1.38
CLK3-202ENST00000395066 NRDCO43847 1150 aa23.68■■□□□ 1.38
CLK3-202ENST00000395066 USP49Q70CQ1 688 aa23.68■■□□□ 1.38
CLK3-202ENST00000395066 TMX1Q9H3N1 280 aa23.68■■□□□ 1.38
CLK3-202ENST00000395066 SLC4A4Q9Y6R1 1079 aa23.68■■□□□ 1.38
CLK3-202ENST00000395066 POLR2DO15514 142 aaKnown RBP23.68■■□□□ 1.38
CLK3-202ENST00000395066 H2AFXP16104 143 aaPredicted RBP23.68■■□□□ 1.38
CLK3-202ENST00000395066 MAP3K12Q12852 859 aa23.68■■□□□ 1.38
CLK3-202ENST00000395066 DHX8Q14562 1220 aaKnown RBP23.68■■□□□ 1.38
CLK3-202ENST00000395066 CCDC93Q567U6 631 aa23.68■■□□□ 1.38
CLK3-202ENST00000395066 EIF4ENIF1Q9NRA8 985 aaKnown RBP23.68■■□□□ 1.38
CLK3-202ENST00000395066 hCG_1642624A0A1W2PR95 340 aa23.67■■□□□ 1.38
CLK3-202ENST00000395066 MMP1P03956 469 aa23.67■■□□□ 1.38
CLK3-202ENST00000395066 LIFRP42702 1097 aa23.67■■□□□ 1.38
CLK3-202ENST00000395066 FMR1Q06787 632 aaKnown RBP eCLIP23.67■■□□□ 1.38
CLK3-202ENST00000395066 SUSD4Q5VX71 490 aa23.67■■□□□ 1.38
CLK3-202ENST00000395066 SERTAD1Q9UHV2 236 aa23.67■■□□□ 1.38
CLK3-202ENST00000395066 ITGB4P16144 1822 aa23.67■■□□□ 1.38
CLK3-202ENST00000395066 FAM237AA0A1B0GTK4 181 aa23.66■■□□□ 1.38
CLK3-202ENST00000395066 FAM205CA6NFA0 338 aa23.66■■□□□ 1.38
CLK3-202ENST00000395066 TUBB4AP04350 444 aa23.66■■□□□ 1.38
CLK3-202ENST00000395066 TOP1P11387 765 aaKnown RBP23.66■■□□□ 1.38
CLK3-202ENST00000395066 RTN1Q16799 776 aa23.66■■□□□ 1.38
CLK3-202ENST00000395066 VSTM4Q8IW00 320 aa23.66■■□□□ 1.38
CLK3-202ENST00000395066 MAN1B1Q9UKM7 699 aa23.66■■□□□ 1.38
CLK3-202ENST00000395066 NUP98P52948 1817 aa23.66■■□□□ 1.38
CLK3-202ENST00000395066 WTIPA6NIX2 430 aaPredicted RBP23.66■■□□□ 1.38
CLK3-202ENST00000395066 SLC5A1P13866 664 aa23.66■■□□□ 1.38
CLK3-202ENST00000395066 MDM2Q00987 491 aaPredicted RBP23.66■■□□□ 1.38
CLK3-202ENST00000395066 BMS1Q14692 1282 aaKnown RBP23.66■■□□□ 1.38
CLK3-202ENST00000395066 ST7Q9NRC1 585 aa23.66■■□□□ 1.38
CLK3-202ENST00000395066 IFNAR1P17181 557 aa23.65■■□□□ 1.38
CLK3-202ENST00000395066 WTAPQ15007 396 aa23.65■■□□□ 1.38
CLK3-202ENST00000395066 ALX1Q15699 326 aa23.65■■□□□ 1.38
CLK3-202ENST00000395066 SDR42E1Q8WUS8 393 aa23.65■■□□□ 1.38
CLK3-202ENST00000395066 MPHOSPH8Q99549 860 aa23.65■■□□□ 1.38
CLK3-202ENST00000395066 FBXO2Q9UK22 296 aaPredicted RBP23.65■■□□□ 1.38
CLK3-202ENST00000395066 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP23.65■■□□□ 1.383e-7■■■□□ 15.1
CLK3-202ENST00000395066 LRP6O75581 1613 aa23.65■■□□□ 1.38
CLK3-202ENST00000395066 CHD4Q14839 1912 aa23.65■■□□□ 1.38
CLK3-202ENST00000395066 MROH5Q6ZUA9 1318 aa23.65■■□□□ 1.38
CLK3-202ENST00000395066 ADGRA1Q86SQ6 560 aa23.64■■□□□ 1.38
CLK3-202ENST00000395066 POSTNQ15063 836 aa23.64■■□□□ 1.37
CLK3-202ENST00000395066 ABCA3Q99758 1704 aa23.64■■□□□ 1.37
CLK3-202ENST00000395066 MINDY4BA8MYZ0 360 aa23.63■■□□□ 1.37
CLK3-202ENST00000395066 TRIM65Q6PJ69 517 aa23.63■■□□□ 1.37
CLK3-202ENST00000395066 ZNF34Q8IZ26 560 aa23.63■■□□□ 1.37
CLK3-202ENST00000395066 SHISA4Q96DD7 197 aa23.63■■□□□ 1.37
CLK3-202ENST00000395066 CCDC66A2RUB6 948 aa23.63■■□□□ 1.37
CLK3-202ENST00000395066 ADKP55263 362 aaKnown RBP23.63■■□□□ 1.37
CLK3-202ENST00000395066 ETF1P62495 437 aaKnown RBP23.63■■□□□ 1.37
CLK3-202ENST00000395066 SAFBQ15424 915 aaKnown RBP eCLIP23.63■■□□□ 1.37
CLK3-202ENST00000395066 CABP5Q9NP86 173 aa23.63■■□□□ 1.37
CLK3-202ENST00000395066 PODXL2Q9NZ53 605 aa23.63■■□□□ 1.37
CLK3-202ENST00000395066 NFE2L3Q9Y4A8 694 aa23.63■■□□□ 1.37
CLK3-202ENST00000395066 BCL9O00512 1426 aa23.63■■□□□ 1.37
CLK3-202ENST00000395066 STK36Q9NRP7 1315 aa23.63■■□□□ 1.37
CLK3-202ENST00000395066 CBFA2T2O43439 604 aa23.63■■□□□ 1.37
CLK3-202ENST00000395066 CASP1P29466 404 aa23.63■■□□□ 1.37
CLK3-202ENST00000395066 CLCN6P51797 869 aa23.63■■□□□ 1.37
CLK3-202ENST00000395066 REXO1L1PQ8IX06 675 aa23.63■■□□□ 1.37
CLK3-202ENST00000395066 TRIM22Q8IYM9 498 aa23.63■■□□□ 1.37
CLK3-202ENST00000395066 MED15Q96RN5 788 aa23.63■■□□□ 1.37
CLK3-202ENST00000395066 KRT23Q9C075 422 aa23.63■■□□□ 1.37
CLK3-202ENST00000395066 ANKRD36CQ5JPF3 1778 aa23.62■■□□□ 1.37
CLK3-202ENST00000395066 ARHGAP29Q52LW3 1261 aa23.62■■□□□ 1.37
CLK3-202ENST00000395066 TMEM139Q8IV31 216 aa23.62■■□□□ 1.37
CLK3-202ENST00000395066 LRP2BPQ9P2M1 347 aa23.62■■□□□ 1.37
CLK3-202ENST00000395066 ZNF335Q9H4Z2 1342 aaPredicted RBP23.62■■□□□ 1.37
CLK3-202ENST00000395066 FAM193AP78312 1265 aa23.62■■□□□ 1.37
CLK3-202ENST00000395066 CRACR2BQ8N4Y2 399 aaPredicted RBP23.62■■□□□ 1.37
CLK3-202ENST00000395066 SAMSN1Q9NSI8 373 aaKnown RBP23.62■■□□□ 1.37
CLK3-202ENST00000395066 CCP110O43303 1012 aa23.61■■□□□ 1.37
CLK3-202ENST00000395066 PRDM1O75626 825 aa23.61■■□□□ 1.37
CLK3-202ENST00000395066 PTPREP23469 700 aa23.61■■□□□ 1.37
CLK3-202ENST00000395066 EARS2Q5JPH6 523 aaKnown RBP23.61■■□□□ 1.37
CLK3-202ENST00000395066 CNNM2Q9H8M5 875 aa23.61■■□□□ 1.37
CLK3-202ENST00000395066 ABCF2Q9UG63 623 aa23.61■■□□□ 1.37
CLK3-202ENST00000395066 FHOD1Q9Y613 1164 aa23.61■■□□□ 1.37
CLK3-202ENST00000395066 CYP2D7A0A087X1C5 515 aa23.61■■□□□ 1.37
CLK3-202ENST00000395066 CDK11BP21127 795 aaKnown RBP23.61■■□□□ 1.37
CLK3-202ENST00000395066 ZNF654Q8IZM8 581 aa23.61■■□□□ 1.37
CLK3-202ENST00000395066 STAG1Q8WVM7 1258 aa23.61■■□□□ 1.37
CLK3-202ENST00000395066 CSRNP2Q9H175 543 aa23.61■■□□□ 1.37
CLK3-202ENST00000395066 PHLPP2Q6ZVD8 1323 aa23.6■■□□□ 1.37
CLK3-202ENST00000395066 URI1O94763 535 aaPredicted RBP23.6■■□□□ 1.37
CLK3-202ENST00000395066 EPC1Q9H2F5 836 aa23.6■■□□□ 1.37
CLK3-202ENST00000395066 VPS54Q9P1Q0 977 aa23.6■■□□□ 1.37
CLK3-202ENST00000395066 FANCBQ8NB91 859 aa23.6■■□□□ 1.37
CLK3-202ENST00000395066 ERICH2A1L162 156 aa23.59■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms