RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 CWC15Q9P013 229 aaKnown RBP12.83□□□□□ -0.36
CUX1-204ENST00000393824 CFAP45Q9UL16 551 aa12.83□□□□□ -0.36
CUX1-204ENST00000393824 C10orf71Q711Q0 1435 aa12.83□□□□□ -0.36
CUX1-204ENST00000393824 COL1A1P02452 1464 aaPredicted RBP12.83□□□□□ -0.36
CUX1-204ENST00000393824 EFCAB8A8MWE9 144 aa12.83□□□□□ -0.36
CUX1-204ENST00000393824 POLR3GO15318 223 aaPredicted RBP12.83□□□□□ -0.36
CUX1-204ENST00000393824 RPS6KB1P23443 525 aa12.83□□□□□ -0.36
CUX1-204ENST00000393824 ZAP70P43403 619 aa12.83□□□□□ -0.36
CUX1-204ENST00000393824 RASGRF1Q13972 1273 aa12.83□□□□□ -0.36
CUX1-204ENST00000393824 GORABQ5T7V8 394 aa12.83□□□□□ -0.36
CUX1-204ENST00000393824 MTFR1LQ9H019 292 aa12.83□□□□□ -0.36
CUX1-204ENST00000393824 ANKIB1Q9P2G1 1089 aa12.83□□□□□ -0.36
CUX1-204ENST00000393824 POLLQ9UGP5 575 aa12.83□□□□□ -0.36
CUX1-204ENST00000393824 KCNG1Q9UIX4 513 aa12.83□□□□□ -0.36
CUX1-204ENST00000393824 IFIT1P09914 478 aaKnown RBP12.82□□□□□ -0.36
CUX1-204ENST00000393824 NPR1P16066 1061 aa12.82□□□□□ -0.36
CUX1-204ENST00000393824 RESTQ13127 1097 aa12.82□□□□□ -0.36
CUX1-204ENST00000393824 KRT32Q14532 448 aa12.82□□□□□ -0.36
CUX1-204ENST00000393824 CCDC158Q5M9N0 1113 aa12.82□□□□□ -0.36
CUX1-204ENST00000393824 IQUBQ8NA54 791 aa12.82□□□□□ -0.36
CUX1-204ENST00000393824 MASTLQ96GX5 879 aa12.82□□□□□ -0.36
CUX1-204ENST00000393824 FAM84BQ96KN1 310 aaPredicted RBP12.82□□□□□ -0.36
CUX1-204ENST00000393824 FAM227BQ96M60 508 aa12.82□□□□□ -0.36
CUX1-204ENST00000393824 ZSCAN16Q9H4T2 348 aaPredicted RBP12.82□□□□□ -0.36
CUX1-204ENST00000393824 JAG2Q9Y219 1238 aa12.82□□□□□ -0.36
CUX1-204ENST00000393824 PPEF1O14829 653 aaPredicted RBP12.82□□□□□ -0.36
CUX1-204ENST00000393824 DHX16O60231 1041 aaKnown RBP12.82□□□□□ -0.36
CUX1-204ENST00000393824 TADA3O75528 432 aa12.82□□□□□ -0.36
CUX1-204ENST00000393824 TBC1D8O95759 1140 aa12.82□□□□□ -0.36
CUX1-204ENST00000393824 CASQ1P31415 396 aa12.82□□□□□ -0.36
CUX1-204ENST00000393824 TTC39AQ5SRH9 613 aa12.82□□□□□ -0.36
CUX1-204ENST00000393824 FBXO18Q8NFZ0 1043 aa12.82□□□□□ -0.36
CUX1-204ENST00000393824 GOLGA5Q8TBA6 731 aa12.82□□□□□ -0.36
CUX1-204ENST00000393824 ZNF804BA4D1E1 1349 aa12.81□□□□□ -0.36
CUX1-204ENST00000393824 CCP110O43303 1012 aa12.81□□□□□ -0.36
CUX1-204ENST00000393824 SLC5A1P13866 664 aa12.81□□□□□ -0.36
CUX1-204ENST00000393824 DPEP1P16444 411 aa12.81□□□□□ -0.36
CUX1-204ENST00000393824 REXO1L1PQ8IX06 675 aa12.81□□□□□ -0.36
CUX1-204ENST00000393824 CEP57L1Q8IYX8 460 aa12.81□□□□□ -0.36
CUX1-204ENST00000393824 EXOC4Q96A65 974 aa12.81□□□□□ -0.36
CUX1-204ENST00000393824 ZBTB9Q96C00 473 aa12.81□□□□□ -0.36
CUX1-204ENST00000393824 PPP1R1BQ9UD71 204 aaPredicted RBP12.81□□□□□ -0.36
CUX1-204ENST00000393824 SLX4Q8IY92 1834 aa12.81□□□□□ -0.36
CUX1-204ENST00000393824 H0YIN7 160 aa12.8□□□□□ -0.36
CUX1-204ENST00000393824 NRDCO43847 1150 aa12.8□□□□□ -0.36
CUX1-204ENST00000393824 BBOX1O75936 387 aa12.8□□□□□ -0.36
CUX1-204ENST00000393824 OAS2P29728 719 aaKnown RBP12.8□□□□□ -0.36
CUX1-204ENST00000393824 UBE4AQ14139 1066 aa12.8□□□□□ -0.36
CUX1-204ENST00000393824 SMC1AQ14683 1233 aaKnown RBP12.8□□□□□ -0.36
CUX1-204ENST00000393824 ATL3Q6DD88 541 aa12.8□□□□□ -0.36
CUX1-204ENST00000393824 ARMCX5Q6P1M9 558 aa12.8□□□□□ -0.36
CUX1-204ENST00000393824 SEC62Q99442 399 aaKnown RBP12.8□□□□□ -0.36
CUX1-204ENST00000393824 NAT10Q9H0A0 1025 aaKnown RBP12.8□□□□□ -0.36
CUX1-204ENST00000393824 PAG1Q9NWQ8 432 aa12.8□□□□□ -0.36
CUX1-204ENST00000393824 RCOR1Q9UKL0 485 aa12.8□□□□□ -0.36
CUX1-204ENST00000393824 AKAP11Q9UKA4 1901 aa12.8□□□□□ -0.36
CUX1-204ENST00000393824 A0A0D9SFI3 127 aa12.8□□□□□ -0.36
CUX1-204ENST00000393824 SASH3O75995 380 aa12.8□□□□□ -0.36
CUX1-204ENST00000393824 ARID4AP29374 1257 aaPredicted RBP12.8□□□□□ -0.36
CUX1-204ENST00000393824 NMIQ13287 307 aaPredicted RBP12.8□□□□□ -0.36
CUX1-204ENST00000393824 SRLQ86TD4 932 aa12.8□□□□□ -0.36
CUX1-204ENST00000393824 CHMP4CQ96CF2 233 aa12.8□□□□□ -0.36
CUX1-204ENST00000393824 ATP6V0A2Q9Y487 856 aa12.8□□□□□ -0.36
CUX1-204ENST00000393824 DUOX1Q9NRD9 1551 aa12.8□□□□□ -0.36
CUX1-204ENST00000393824 MED23Q9ULK4 1368 aa12.79□□□□□ -0.36
CUX1-204ENST00000393824 UFL1O94874 794 aa12.79□□□□□ -0.36
CUX1-204ENST00000393824 MYCNP04198 464 aaPredicted RBP12.79□□□□□ -0.36
CUX1-204ENST00000393824 SFPQP23246 707 aaKnown RBP eCLIP12.79□□□□□ -0.361e-6■■■■□ 20.4
CUX1-204ENST00000393824 TOB2Q14106 344 aaPredicted RBP12.79□□□□□ -0.36
CUX1-204ENST00000393824 LRRFIP1Q32MZ4 808 aaKnown RBP12.79□□□□□ -0.36
CUX1-204ENST00000393824 CC2D1AQ6P1N0 951 aaPredicted RBP12.79□□□□□ -0.36
CUX1-204ENST00000393824 TRIM65Q6PJ69 517 aa12.79□□□□□ -0.36
CUX1-204ENST00000393824 ENGASEQ8NFI3 743 aa12.79□□□□□ -0.36
CUX1-204ENST00000393824 FSD1Q9BTV5 496 aa12.79□□□□□ -0.36
CUX1-204ENST00000393824 ZCCHC17Q9NP64 241 aaKnown RBP12.79□□□□□ -0.36
CUX1-204ENST00000393824 PIH1D3Q9NQM4 214 aaKnown RBP12.79□□□□□ -0.36
CUX1-204ENST00000393824 XDHP47989 1333 aa12.79□□□□□ -0.36
CUX1-204ENST00000393824 CACNA1SQ13698 1873 aa12.79□□□□□ -0.36
CUX1-204ENST00000393824 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.79□□□□□ -0.36
CUX1-204ENST00000393824 TRIM66O15016 1216 aa12.79□□□□□ -0.36
CUX1-204ENST00000393824 CCAR1Q8IX12 1150 aaKnown RBP12.79□□□□□ -0.36
CUX1-204ENST00000393824 C10orf67Q8IYJ2 551 aa12.79□□□□□ -0.36
CUX1-204ENST00000393824 CNPY4Q8N129 248 aa12.79□□□□□ -0.36
CUX1-204ENST00000393824 MNS1Q8NEH6 495 aa12.79□□□□□ -0.36
CUX1-204ENST00000393824 TBC1D16Q8TBP0 767 aa12.79□□□□□ -0.36
CUX1-204ENST00000393824 C7orf43Q8WVR3 580 aa12.79□□□□□ -0.36
CUX1-204ENST00000393824 BPIFA3Q9BQP9 254 aa12.79□□□□□ -0.36
CUX1-204ENST00000393824 DNAI1Q9UI46 699 aa12.79□□□□□ -0.36
CUX1-204ENST00000393824 LCMT1Q9UIC8 334 aa12.79□□□□□ -0.36
CUX1-204ENST00000393824 ARAP2Q8WZ64 1704 aa12.79□□□□□ -0.36
CUX1-204ENST00000393824 LTBP1Q14766 1721 aa12.78□□□□□ -0.36
CUX1-204ENST00000393824 SEC31AO94979 1220 aaKnown RBP12.78□□□□□ -0.36
CUX1-204ENST00000393824 ADD1P35611 737 aaKnown RBP12.78□□□□□ -0.36
CUX1-204ENST00000393824 FBXO33Q7Z6M2 555 aa12.78□□□□□ -0.36
CUX1-204ENST00000393824 ZNF589Q86UQ0 364 aaPredicted RBP12.78□□□□□ -0.36
CUX1-204ENST00000393824 AOPEPQ8N6M6 819 aa12.78□□□□□ -0.36
CUX1-204ENST00000393824 GPR161Q8N6U8 529 aaKnown RBP12.78□□□□□ -0.36
CUX1-204ENST00000393824 LLPHQ9BRT6 129 aaKnown RBP12.78□□□□□ -0.36
CUX1-204ENST00000393824 ANKRD2Q9GZV1 360 aa12.78□□□□□ -0.36
CUX1-204ENST00000393824 RFX7Q2KHR2 1363 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms