RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 SERPINB13Q9UIV8 391 aa11.92□□□□□ -0.5
COL6A3-205ENST00000392004 GJB2P29033 226 aa11.91□□□□□ -0.5
COL6A3-205ENST00000392004 MCM2P49736 904 aa11.91□□□□□ -0.5
COL6A3-205ENST00000392004 SNAP25P60880 206 aa11.91□□□□□ -0.5
COL6A3-205ENST00000392004 ADCK5Q3MIX3 580 aa11.91□□□□□ -0.5
COL6A3-205ENST00000392004 SAMM50Q9Y512 469 aa11.91□□□□□ -0.5
COL6A3-205ENST00000392004 CCDC194A0A1B0GVG4 234 aa11.91□□□□□ -0.5
COL6A3-205ENST00000392004 E7EWF7 191 aa11.91□□□□□ -0.5
COL6A3-205ENST00000392004 TM4SF1P30408 202 aa11.91□□□□□ -0.5
COL6A3-205ENST00000392004 ZNF445P59923 1031 aa11.91□□□□□ -0.5
COL6A3-205ENST00000392004 IRX3P78415 501 aaPredicted RBP11.91□□□□□ -0.5
COL6A3-205ENST00000392004 RASA3Q14644 834 aa11.91□□□□□ -0.5
COL6A3-205ENST00000392004 ZSCAN23Q3MJ62 389 aa11.91□□□□□ -0.5
COL6A3-205ENST00000392004 CDK5RAP3Q96JB5 506 aa11.91□□□□□ -0.5
COL6A3-205ENST00000392004 WRNIP1Q96S55 665 aa11.91□□□□□ -0.5
COL6A3-205ENST00000392004 V9GY48 417 aaPredicted RBP11.91□□□□□ -0.5
COL6A3-205ENST00000392004 SLURP2P0DP57 97 aa11.91□□□□□ -0.5
COL6A3-205ENST00000392004 SLC16A2P36021 539 aa11.91□□□□□ -0.5
COL6A3-205ENST00000392004 NAPAP54920 295 aa11.91□□□□□ -0.5
COL6A3-205ENST00000392004 AKNAD1Q5T1N1 836 aa11.91□□□□□ -0.5
COL6A3-205ENST00000392004 SNX14Q9Y5W7 946 aa11.91□□□□□ -0.5
COL6A3-205ENST00000392004 SLIT3O75094 1523 aa11.9□□□□□ -0.5
COL6A3-205ENST00000392004 KRT18P05783 430 aaKnown RBP11.9□□□□□ -0.5
COL6A3-205ENST00000392004 ICA1Q05084 483 aa11.9□□□□□ -0.5
COL6A3-205ENST00000392004 NBPF9Q3BBW0 867 aa11.9□□□□□ -0.5
COL6A3-205ENST00000392004 STYK1Q6J9G0 422 aa11.9□□□□□ -0.5
COL6A3-205ENST00000392004 PDILTQ8N807 584 aa11.9□□□□□ -0.5
COL6A3-205ENST00000392004 TMEM39BQ9GZU3 492 aa11.9□□□□□ -0.5
COL6A3-205ENST00000392004 NWD1Q149M9 1564 aa11.9□□□□□ -0.5
COL6A3-205ENST00000392004 A0A0U1RQG5 324 aaPredicted RBP11.9□□□□□ -0.5
COL6A3-205ENST00000392004 CD2BP2O95400 341 aaKnown RBP11.9□□□□□ -0.5
COL6A3-205ENST00000392004 LIG1P18858 919 aa11.9□□□□□ -0.5
COL6A3-205ENST00000392004 RRAGCQ9HB90 399 aa11.9□□□□□ -0.5
COL6A3-205ENST00000392004 NOL7Q9UMY1 257 aaKnown RBP11.9□□□□□ -0.5
COL6A3-205ENST00000392004 GH2P01242 217 aa11.9□□□□□ -0.5
COL6A3-205ENST00000392004 TGFB2P61812 414 aa11.9□□□□□ -0.5
COL6A3-205ENST00000392004 ABCB5Q2M3G0 1257 aa11.9□□□□□ -0.5
COL6A3-205ENST00000392004 GPR108Q9NPR9 543 aa11.9□□□□□ -0.5
COL6A3-205ENST00000392004 PCDHAC2Q9Y5I4 1007 aa11.9□□□□□ -0.5
COL6A3-205ENST00000392004 NMT2O60551 498 aa11.89□□□□□ -0.51
COL6A3-205ENST00000392004 CYP21A2P08686 494 aa11.89□□□□□ -0.51
COL6A3-205ENST00000392004 EPS15P42566 896 aa11.89□□□□□ -0.51
COL6A3-205ENST00000392004 FAM173BQ6P4H8 233 aa11.89□□□□□ -0.51
COL6A3-205ENST00000392004 KCTD1Q719H9 257 aa11.89□□□□□ -0.51
COL6A3-205ENST00000392004 CUL5Q93034 780 aa11.89□□□□□ -0.51
COL6A3-205ENST00000392004 ALG1Q9BT22 464 aa11.89□□□□□ -0.51
COL6A3-205ENST00000392004 ADD1P35611 737 aaKnown RBP11.89□□□□□ -0.51
COL6A3-205ENST00000392004 UBE3CQ15386 1083 aa11.89□□□□□ -0.51
COL6A3-205ENST00000392004 SLC10A4Q96EP9 437 aa11.89□□□□□ -0.51
COL6A3-205ENST00000392004 OTUD5Q96G74 571 aa11.89□□□□□ -0.51
COL6A3-205ENST00000392004 CCDC34Q96HJ3 373 aa11.89□□□□□ -0.51
COL6A3-205ENST00000392004 PRMT6Q96LA8 375 aaPredicted RBP11.89□□□□□ -0.51
COL6A3-205ENST00000392004 ZSCAN31Q96LW9 406 aaPredicted RBP11.89□□□□□ -0.51
COL6A3-205ENST00000392004 PLA2G12BQ9BX93 195 aa11.89□□□□□ -0.51
COL6A3-205ENST00000392004 ARHGEF10LQ9HCE6 1279 aa11.89□□□□□ -0.51
COL6A3-205ENST00000392004 ZBTB21Q9ULJ3 1066 aa11.89□□□□□ -0.51
COL6A3-205ENST00000392004 FLOT1O75955 427 aa11.89□□□□□ -0.51
COL6A3-205ENST00000392004 TPD52L1Q16890 204 aaPredicted RBP11.89□□□□□ -0.51
COL6A3-205ENST00000392004 ZMYM1Q5SVZ6 1142 aa11.89□□□□□ -0.51
COL6A3-205ENST00000392004 CCDC73Q6ZRK6 1079 aa11.89□□□□□ -0.51
COL6A3-205ENST00000392004 ZFP91Q96JP5 570 aaPredicted RBP11.89□□□□□ -0.51
COL6A3-205ENST00000392004 ZHX2Q9Y6X8 837 aa11.89□□□□□ -0.51
COL6A3-205ENST00000392004 PEAK1Q9H792 1746 aa11.88□□□□□ -0.51
COL6A3-205ENST00000392004 KNDC1Q76NI1 1749 aa11.88□□□□□ -0.51
COL6A3-205ENST00000392004 PTPDC1A2A3K4 754 aa11.88□□□□□ -0.51
COL6A3-205ENST00000392004 SEMA3EO15041 775 aa11.88□□□□□ -0.51
COL6A3-205ENST00000392004 CFBP00751 764 aa11.88□□□□□ -0.51
COL6A3-205ENST00000392004 PARP1P09874 1014 aaKnown RBP11.88□□□□□ -0.51
COL6A3-205ENST00000392004 NFIAQ12857 509 aa11.88□□□□□ -0.51
COL6A3-205ENST00000392004 SLC10A5Q5PT55 438 aa11.88□□□□□ -0.51
COL6A3-205ENST00000392004 DYNC1I1O14576 645 aa11.88□□□□□ -0.51
COL6A3-205ENST00000392004 DCAF15Q66K64 600 aa11.88□□□□□ -0.51
COL6A3-205ENST00000392004 RBSNQ9H1K0 784 aa11.88□□□□□ -0.51
COL6A3-205ENST00000392004 ZKSCAN5Q9Y2L8 839 aa11.88□□□□□ -0.51
COL6A3-205ENST00000392004 DAGLAQ9Y4D2 1042 aa11.88□□□□□ -0.51
COL6A3-205ENST00000392004 STRCP1A6NGW2 1772 aa11.88□□□□□ -0.51
COL6A3-205ENST00000392004 SPP2Q13103 211 aa11.88□□□□□ -0.51
COL6A3-205ENST00000392004 SUPT20HL1Q3ZLR7 823 aa11.88□□□□□ -0.51
COL6A3-205ENST00000392004 RNF214Q8ND24 703 aa11.88□□□□□ -0.51
COL6A3-205ENST00000392004 KIF2CQ99661 725 aa11.88□□□□□ -0.51
COL6A3-205ENST00000392004 TNKSO95271 1327 aa11.88□□□□□ -0.51
COL6A3-205ENST00000392004 ZNF500O60304 480 aaPredicted RBP11.87□□□□□ -0.51
COL6A3-205ENST00000392004 CASP7P55210 303 aa11.87□□□□□ -0.51
COL6A3-205ENST00000392004 CLEC17AQ6ZS10 378 aa11.87□□□□□ -0.51
COL6A3-205ENST00000392004 SMARCC2Q8TAQ2 1214 aa11.87□□□□□ -0.51
COL6A3-205ENST00000392004 SYAP1Q96A49 352 aaPredicted RBP11.87□□□□□ -0.51
COL6A3-205ENST00000392004 STRBPQ96SI9 672 aaKnown RBP11.87□□□□□ -0.51
COL6A3-205ENST00000392004 SASS6Q6UVJ0 657 aa11.87□□□□□ -0.51
COL6A3-205ENST00000392004 STAP2Q9UGK3 403 aa11.87□□□□□ -0.51
COL6A3-205ENST00000392004 TMEM232C9JQI7 657 aa11.87□□□□□ -0.51
COL6A3-205ENST00000392004 JAK2O60674 1132 aa11.87□□□□□ -0.51
COL6A3-205ENST00000392004 ALAS1P13196 640 aa11.87□□□□□ -0.51
COL6A3-205ENST00000392004 GRIK5Q16478 980 aa11.87□□□□□ -0.51
COL6A3-205ENST00000392004 JAKMIP3Q5VZ66 844 aa11.87□□□□□ -0.51
COL6A3-205ENST00000392004 RSBN1LQ6PCB5 846 aaPredicted RBP11.87□□□□□ -0.51
COL6A3-205ENST00000392004 RUFY3Q7L099 469 aa11.87□□□□□ -0.51
COL6A3-205ENST00000392004 NUP88Q99567 741 aaPredicted RBP11.87□□□□□ -0.51
COL6A3-205ENST00000392004 CD2APQ9Y5K6 639 aa11.87□□□□□ -0.51
COL6A3-205ENST00000392004 LTN1O94822 1766 aa11.86□□□□□ -0.51
COL6A3-205ENST00000392004 STRIP1Q5VSL9 837 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms