RNA–Protein interactions for RNA: ENST00000389386.7

VPS9D1-201, Transcript of VPS9 domain containing 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene VPS9D1, Length 2,748 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-201ENST00000389386 EDC3Q96F86 508 aaKnown RBP16.68■□□□□ 0.26
VPS9D1-201ENST00000389386 AGXT2Q9BYV1 514 aa16.68■□□□□ 0.26
VPS9D1-201ENST00000389386 MROH7-TTC4A0A0A0MT08 1334 aa16.68■□□□□ 0.26
VPS9D1-201ENST00000389386 ZC3H4Q9UPT8 1303 aaKnown RBP16.68■□□□□ 0.26
VPS9D1-201ENST00000389386 CTAGE9A4FU28 777 aa16.68■□□□□ 0.26
VPS9D1-201ENST00000389386 SOWAHDA6NJG2 315 aa16.68■□□□□ 0.26
VPS9D1-201ENST00000389386 EBAG9O00559 213 aa16.68■□□□□ 0.26
VPS9D1-201ENST00000389386 HMGB1P09429 215 aaKnown RBP16.68■□□□□ 0.26
VPS9D1-201ENST00000389386 SATB1Q01826 763 aa16.68■□□□□ 0.26
VPS9D1-201ENST00000389386 EPHA10Q5JZY3 1008 aa16.68■□□□□ 0.26
VPS9D1-201ENST00000389386 OTUD7BQ6GQQ9 843 aa16.68■□□□□ 0.26
VPS9D1-201ENST00000389386 EGFL6Q8IUX8 553 aa16.68■□□□□ 0.26
VPS9D1-201ENST00000389386 NOA1Q8NC60 698 aaKnown RBP16.68■□□□□ 0.26
VPS9D1-201ENST00000389386 CCDC189A1A4V9 331 aa16.67■□□□□ 0.26
VPS9D1-201ENST00000389386 DDX58O95786 925 aaKnown RBP16.67■□□□□ 0.26
VPS9D1-201ENST00000389386 SYKP43405 635 aa16.67■□□□□ 0.26
VPS9D1-201ENST00000389386 EXOSC10Q01780 885 aaKnown RBP16.67■□□□□ 0.26
VPS9D1-201ENST00000389386 PNOCQ13519 176 aa16.67■□□□□ 0.26
VPS9D1-201ENST00000389386 A1CFQ9NQ94 594 aaKnown RBP16.67■□□□□ 0.26
VPS9D1-201ENST00000389386 PDIA3P30101 505 aaKnown RBP16.67■□□□□ 0.26
VPS9D1-201ENST00000389386 TDO2P48775 406 aa16.67■□□□□ 0.26
VPS9D1-201ENST00000389386 PDE4BQ07343 736 aa16.67■□□□□ 0.26
VPS9D1-201ENST00000389386 WHAMMP3Q1A5X7 153 aa16.67■□□□□ 0.26
VPS9D1-201ENST00000389386 GRIPAP1Q4V328 841 aa16.67■□□□□ 0.26
VPS9D1-201ENST00000389386 HSP90AA4PQ58FG1 418 aa16.67■□□□□ 0.26
VPS9D1-201ENST00000389386 MYSM1Q5VVJ2 828 aa16.67■□□□□ 0.26
VPS9D1-201ENST00000389386 RAD9BQ6WBX8 426 aa16.67■□□□□ 0.26
VPS9D1-201ENST00000389386 SIPA1L3O60292 1781 aaPredicted RBP16.66■□□□□ 0.26
VPS9D1-201ENST00000389386 IRAK1P51617 712 aa16.66■□□□□ 0.26
VPS9D1-201ENST00000389386 CCDC129Q6ZRS4 1044 aa16.66■□□□□ 0.26
VPS9D1-201ENST00000389386 SMARCC1Q92922 1105 aaPredicted RBP16.66■□□□□ 0.26
VPS9D1-201ENST00000389386 PANX2Q96RD6 677 aa16.66■□□□□ 0.26
VPS9D1-201ENST00000389386 HPCAL4Q9UM19 191 aa16.66■□□□□ 0.26
VPS9D1-201ENST00000389386 C5P01031 1676 aa16.66■□□□□ 0.26
VPS9D1-201ENST00000389386 ANO1Q5XXA6 986 aa16.66■□□□□ 0.26
VPS9D1-201ENST00000389386 DCAF5Q96JK2 942 aa16.66■□□□□ 0.26
VPS9D1-201ENST00000389386 KAT14Q9H8E8 782 aa16.66■□□□□ 0.26
VPS9D1-201ENST00000389386 IL2RBP14784 551 aa16.65■□□□□ 0.26
VPS9D1-201ENST00000389386 ZNF18P17022 549 aa16.65■□□□□ 0.26
VPS9D1-201ENST00000389386 G3BP1Q13283 466 aaKnown RBP eCLIP16.65■□□□□ 0.26
VPS9D1-201ENST00000389386 POTEDQ86YR6 584 aa16.65■□□□□ 0.26
VPS9D1-201ENST00000389386 FOXP4Q8IVH2 680 aaPredicted RBP16.65■□□□□ 0.26
VPS9D1-201ENST00000389386 PRPF38AQ8NAV1 312 aaKnown RBP16.65■□□□□ 0.26
VPS9D1-201ENST00000389386 ZCRB1Q8TBF4 217 aaKnown RBP16.65■□□□□ 0.26
VPS9D1-201ENST00000389386 CERKQ8TCT0 537 aa16.65■□□□□ 0.26
VPS9D1-201ENST00000389386 HPSEQ9Y251 543 aa16.65■□□□□ 0.26
VPS9D1-201ENST00000389386 COL16A1Q07092 1604 aaPredicted RBP16.65■□□□□ 0.26
VPS9D1-201ENST00000389386 NEURL1BA8MQ27 555 aa16.65■□□□□ 0.26
VPS9D1-201ENST00000389386 BMP6P22004 513 aa16.65■□□□□ 0.26
VPS9D1-201ENST00000389386 SLC35F6Q8N357 371 aa16.65■□□□□ 0.26
VPS9D1-201ENST00000389386 FAM212AQ96EL1 285 aa16.65■□□□□ 0.26
VPS9D1-201ENST00000389386 ZNF274Q96GC6 653 aaPredicted RBP16.65■□□□□ 0.26
VPS9D1-201ENST00000389386 OVOS2A0A0G2JMS6 1433 aa16.65■□□□□ 0.26
VPS9D1-201ENST00000389386 SCN11AQ9UI33 1791 aa16.64■□□□□ 0.25
VPS9D1-201ENST00000389386 SNRPA1P09661 255 aaKnown RBP16.64■□□□□ 0.25
VPS9D1-201ENST00000389386 CDC27P30260 824 aa16.64■□□□□ 0.25
VPS9D1-201ENST00000389386 INPP5BP32019 993 aa16.64■□□□□ 0.25
VPS9D1-201ENST00000389386 ANKRD13DQ6ZTN6 518 aa16.64■□□□□ 0.25
VPS9D1-201ENST00000389386 STAG1Q8WVM7 1258 aa16.64■□□□□ 0.25
VPS9D1-201ENST00000389386 RIN2Q8WYP3 895 aaPredicted RBP16.64■□□□□ 0.25
VPS9D1-201ENST00000389386 AKR1B15C9JRZ8 316 aaPredicted RBP16.64■□□□□ 0.25
VPS9D1-201ENST00000389386 NEXNQ0ZGT2 675 aa16.64■□□□□ 0.25
VPS9D1-201ENST00000389386 TRDNQ13061 729 aa16.64■□□□□ 0.25
VPS9D1-201ENST00000389386 SYNE3Q6ZMZ3 975 aa16.64■□□□□ 0.25
VPS9D1-201ENST00000389386 BRAPQ7Z569 592 aa16.64■□□□□ 0.25
VPS9D1-201ENST00000389386 CCDC9Q9Y3X0 531 aaKnown RBP16.64■□□□□ 0.25
VPS9D1-201ENST00000389386 C21orf2O43822 256 aa16.63■□□□□ 0.25
VPS9D1-201ENST00000389386 CHGBP05060 677 aa16.63■□□□□ 0.25
VPS9D1-201ENST00000389386 RASGRP2Q7LDG7 609 aa16.63■□□□□ 0.25
VPS9D1-201ENST00000389386 NAPGQ99747 312 aaPredicted RBP16.63■□□□□ 0.25
VPS9D1-201ENST00000389386 TACO1Q9BSH4 297 aaKnown RBP16.63■□□□□ 0.25
VPS9D1-201ENST00000389386 RAI14Q9P0K7 980 aa16.63■□□□□ 0.25
VPS9D1-201ENST00000389386 MARCKSP29966 332 aaPredicted RBP16.63■□□□□ 0.25
VPS9D1-201ENST00000389386 GCKRQ14397 625 aa16.63■□□□□ 0.25
VPS9D1-201ENST00000389386 SLC39A14Q15043 492 aa16.63■□□□□ 0.25
VPS9D1-201ENST00000389386 UBE3BQ7Z3V4 1068 aa16.63■□□□□ 0.25
VPS9D1-201ENST00000389386 METTL16Q86W50 562 aaKnown RBP16.63■□□□□ 0.25
VPS9D1-201ENST00000389386 C8orf76Q96K31 380 aa16.63■□□□□ 0.25
VPS9D1-201ENST00000389386 JPH2Q9BR39 696 aaPredicted RBP16.63■□□□□ 0.25
VPS9D1-201ENST00000389386 ZNF609O15014 1411 aa16.63■□□□□ 0.25
VPS9D1-201ENST00000389386 LAMA4Q16363 1823 aa16.63■□□□□ 0.25
VPS9D1-201ENST00000389386 GPTP24298 496 aa16.62■□□□□ 0.25
VPS9D1-201ENST00000389386 DDR1Q08345 913 aa16.62■□□□□ 0.25
VPS9D1-201ENST00000389386 STIM1Q13586 685 aa16.62■□□□□ 0.25
VPS9D1-201ENST00000389386 NR1I3Q14994 352 aa16.62■□□□□ 0.25
VPS9D1-201ENST00000389386 COG1Q8WTW3 980 aa16.62■□□□□ 0.25
VPS9D1-201ENST00000389386 NAA15Q9BXJ9 866 aaKnown RBP16.62■□□□□ 0.25
VPS9D1-201ENST00000389386 TEX13AQ9BXU3 409 aaPredicted RBP16.62■□□□□ 0.25
VPS9D1-201ENST00000389386 GNL3LQ9NVN8 582 aaKnown RBP16.62■□□□□ 0.25
VPS9D1-201ENST00000389386 PCDHA5Q9Y5H7 936 aa16.62■□□□□ 0.25
VPS9D1-201ENST00000389386 GGCXP38435 758 aa16.62■□□□□ 0.25
VPS9D1-201ENST00000389386 SHC4Q6S5L8 630 aa16.62■□□□□ 0.25
VPS9D1-201ENST00000389386 GBP6Q6ZN66 633 aa16.62■□□□□ 0.25
VPS9D1-201ENST00000389386 FAM76AQ8TAV0 307 aa16.62■□□□□ 0.25
VPS9D1-201ENST00000389386 CDC5LQ99459 802 aaKnown RBP16.62■□□□□ 0.25
VPS9D1-201ENST00000389386 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.62■□□□□ 0.25
VPS9D1-201ENST00000389386 NFE2L3Q9Y4A8 694 aa16.62■□□□□ 0.25
VPS9D1-201ENST00000389386 FAM237AA0A1B0GTK4 181 aa16.61■□□□□ 0.25
VPS9D1-201ENST00000389386 FNTAP49354 379 aa16.61■□□□□ 0.25
VPS9D1-201ENST00000389386 MCMDC2Q4G0Z9 681 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms