RNA–Protein interactions for RNA: ENST00000380871.4

NKX3-1-201, Transcript of NK3 homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene NKX3-1, Length 3,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1-201ENST00000380871 INTS13Q9NVM9 706 aa18.7■□□□□ 0.58
NKX3-1-201ENST00000380871 MYO5AQ9Y4I1 1855 aaKnown RBP18.7■□□□□ 0.58
NKX3-1-201ENST00000380871 MYL5Q02045 173 aa18.69■□□□□ 0.58
NKX3-1-201ENST00000380871 UBE3CQ15386 1083 aa18.69■□□□□ 0.58
NKX3-1-201ENST00000380871 EPB41L4AQ9HCS5 686 aaPredicted RBP18.69■□□□□ 0.58
NKX3-1-201ENST00000380871 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.69■□□□□ 0.58
NKX3-1-201ENST00000380871 DDX60Q8IY21 1712 aaKnown RBP18.69■□□□□ 0.58
NKX3-1-201ENST00000380871 KIF2AO00139 706 aaPredicted RBP18.69■□□□□ 0.58
NKX3-1-201ENST00000380871 IKBKBO14920 756 aa18.69■□□□□ 0.58
NKX3-1-201ENST00000380871 ARHGAP29Q52LW3 1261 aa18.69■□□□□ 0.58
NKX3-1-201ENST00000380871 EPC1Q9H2F5 836 aa18.69■□□□□ 0.58
NKX3-1-201ENST00000380871 FGFR2P21802 821 aa18.69■□□□□ 0.58
NKX3-1-201ENST00000380871 CLCN6P51797 869 aa18.69■□□□□ 0.58
NKX3-1-201ENST00000380871 ZNF827Q17R98 1081 aa18.69■□□□□ 0.58
NKX3-1-201ENST00000380871 FAM217BQ9NTX9 383 aaPredicted RBP18.69■□□□□ 0.58
NKX3-1-201ENST00000380871 PCDHA5Q9Y5H7 936 aa18.69■□□□□ 0.58
NKX3-1-201ENST00000380871 GOLGA8AA7E2F4 631 aa18.68■□□□□ 0.58
NKX3-1-201ENST00000380871 NTSR2O95665 410 aa18.68■□□□□ 0.58
NKX3-1-201ENST00000380871 GUCY1A2P33402 732 aa18.68■□□□□ 0.58
NKX3-1-201ENST00000380871 GABPB1Q06547 395 aaPredicted RBP18.68■□□□□ 0.58
NKX3-1-201ENST00000380871 TERF2Q15554 542 aa18.68■□□□□ 0.58
NKX3-1-201ENST00000380871 TRIM65Q6PJ69 517 aa18.68■□□□□ 0.58
NKX3-1-201ENST00000380871 ZSWIM5Q9P217 1185 aa18.68■□□□□ 0.58
NKX3-1-201ENST00000380871 ABCA3Q99758 1704 aa18.68■□□□□ 0.58
NKX3-1-201ENST00000380871 H2AFXP16104 143 aaPredicted RBP18.68■□□□□ 0.58
NKX3-1-201ENST00000380871 ARID4AP29374 1257 aaPredicted RBP18.68■□□□□ 0.58
NKX3-1-201ENST00000380871 ETF1P62495 437 aaKnown RBP18.68■□□□□ 0.58
NKX3-1-201ENST00000380871 TICAM2Q86XR7 235 aa18.68■□□□□ 0.58
NKX3-1-201ENST00000380871 LINC00116Q8NCU8 138 aa18.68■□□□□ 0.58
NKX3-1-201ENST00000380871 TACC3Q9Y6A5 838 aa18.68■□□□□ 0.58
NKX3-1-201ENST00000380871 CYP2D7A0A087X1C5 515 aa18.68■□□□□ 0.58
NKX3-1-201ENST00000380871 RESP18Q5W5W9 173 aa18.68■□□□□ 0.58
NKX3-1-201ENST00000380871 GRAMD1CQ8IYS0 662 aa18.68■□□□□ 0.58
NKX3-1-201ENST00000380871 SLC26A6Q9BXS9 759 aa18.68■□□□□ 0.58
NKX3-1-201ENST00000380871 FAM53CQ9NYF3 392 aa18.68■□□□□ 0.58
NKX3-1-201ENST00000380871 TFCP2L1Q9NZI6 479 aa18.68■□□□□ 0.58
NKX3-1-201ENST00000380871 NTRK3Q16288 839 aa18.67■□□□□ 0.58
NKX3-1-201ENST00000380871 ANKRD18AQ8IVF6 992 aa18.67■□□□□ 0.58
NKX3-1-201ENST00000380871 ITGB4P16144 1822 aa18.67■□□□□ 0.58
NKX3-1-201ENST00000380871 ZBTB43O43298 467 aa18.67■□□□□ 0.58
NKX3-1-201ENST00000380871 PRDM1O75626 825 aa18.67■□□□□ 0.58
NKX3-1-201ENST00000380871 TRMT44Q8IYL2 757 aaKnown RBP18.67■□□□□ 0.58
NKX3-1-201ENST00000380871 CNNM3Q8NE01 707 aa18.67■□□□□ 0.58
NKX3-1-201ENST00000380871 KCNH3Q9ULD8 1083 aa18.67■□□□□ 0.58
NKX3-1-201ENST00000380871 TCRBV5S4A2TA0A5A2 114 aa18.66■□□□□ 0.58
NKX3-1-201ENST00000380871 PATL2C9JE40 543 aaKnown RBP18.66■□□□□ 0.58
NKX3-1-201ENST00000380871 PARP10Q53GL7 1025 aa18.66■□□□□ 0.58
NKX3-1-201ENST00000380871 LY9Q9HBG7 655 aa18.66■□□□□ 0.58
NKX3-1-201ENST00000380871 KCNJ14Q9UNX9 436 aa18.66■□□□□ 0.58
NKX3-1-201ENST00000380871 AKAP11Q9UKA4 1901 aa18.66■□□□□ 0.58
NKX3-1-201ENST00000380871 URI1O94763 535 aaPredicted RBP18.66■□□□□ 0.58
NKX3-1-201ENST00000380871 IARSP41252 1262 aaKnown RBP18.66■□□□□ 0.58
NKX3-1-201ENST00000380871 MFSD6Q6ZSS7 791 aa18.66■□□□□ 0.58
NKX3-1-201ENST00000380871 VSTM4Q8IW00 320 aa18.66■□□□□ 0.58
NKX3-1-201ENST00000380871 REXO1L1PQ8IX06 675 aa18.66■□□□□ 0.58
NKX3-1-201ENST00000380871 IGDCC4Q8TDY8 1250 aa18.66■□□□□ 0.58
NKX3-1-201ENST00000380871 CELF1Q92879 486 aaKnown RBP18.66■□□□□ 0.58
NKX3-1-201ENST00000380871 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.66■□□□□ 0.58
NKX3-1-201ENST00000380871 SLC12A7Q9Y666 1083 aa18.66■□□□□ 0.58
NKX3-1-201ENST00000380871 MYH7P12883 1935 aa18.66■□□□□ 0.58
NKX3-1-201ENST00000380871 hCG_1642624A0A1W2PR95 340 aa18.66■□□□□ 0.58
NKX3-1-201ENST00000380871 PPP6R2O75170 966 aa18.66■□□□□ 0.58
NKX3-1-201ENST00000380871 PRR29P0C7W0 189 aa18.66■□□□□ 0.58
NKX3-1-201ENST00000380871 TIGD1Q96MW7 591 aa18.66■□□□□ 0.58
NKX3-1-201ENST00000380871 CDCA7Q9BWT1 371 aaPredicted RBP18.66■□□□□ 0.58
NKX3-1-201ENST00000380871 ZNF652Q9Y2D9 606 aa18.66■□□□□ 0.58
NKX3-1-201ENST00000380871 FHOD1Q9Y613 1164 aa18.66■□□□□ 0.58
NKX3-1-201ENST00000380871 SPATA31A5Q5VU36 1347 aa18.65■□□□□ 0.58
NKX3-1-201ENST00000380871 SPATA31A7Q8IWB4 1347 aa18.65■□□□□ 0.58
NKX3-1-201ENST00000380871 GSG1L2A8MUP6 293 aa18.65■□□□□ 0.58
NKX3-1-201ENST00000380871 BTBD18B2RXH4 712 aa18.65■□□□□ 0.58
NKX3-1-201ENST00000380871 TOP1P11387 765 aaKnown RBP18.65■□□□□ 0.58
NKX3-1-201ENST00000380871 DYNLL1P63167 89 aaKnown RBP18.65■□□□□ 0.58
NKX3-1-201ENST00000380871 FMR1Q06787 632 aaKnown RBP eCLIP18.65■□□□□ 0.58
NKX3-1-201ENST00000380871 KRBA2Q6ZNG9 492 aa18.65■□□□□ 0.58
NKX3-1-201ENST00000380871 SLC51AQ86UW1 340 aa18.65■□□□□ 0.58
NKX3-1-201ENST00000380871 ERICH4A6NGS2 130 aa18.65■□□□□ 0.58
NKX3-1-201ENST00000380871 TBC1D9BQ66K14 1250 aa18.65■□□□□ 0.58
NKX3-1-201ENST00000380871 CPLX2Q6PUV4 134 aaKnown RBP18.65■□□□□ 0.58
NKX3-1-201ENST00000380871 TMEM139Q8IV31 216 aa18.65■□□□□ 0.58
NKX3-1-201ENST00000380871 CDC5LQ99459 802 aaKnown RBP18.65■□□□□ 0.58
NKX3-1-201ENST00000380871 ECM29Q5VYK3 1845 aa18.64■□□□□ 0.58
NKX3-1-201ENST00000380871 NRDCO43847 1150 aa18.64■□□□□ 0.58
NKX3-1-201ENST00000380871 KLRK1P26718 216 aa18.64■□□□□ 0.58
NKX3-1-201ENST00000380871 ADGRA1Q86SQ6 560 aa18.64■□□□□ 0.58
NKX3-1-201ENST00000380871 PDILTQ8N807 584 aa18.64■□□□□ 0.58
NKX3-1-201ENST00000380871 CARD6Q9BX69 1037 aa18.64■□□□□ 0.58
NKX3-1-201ENST00000380871 PAPPAQ13219 1627 aa18.64■□□□□ 0.57
NKX3-1-201ENST00000380871 GNPATO15228 680 aa18.64■□□□□ 0.57
NKX3-1-201ENST00000380871 KCNJ6P48051 423 aa18.64■□□□□ 0.57
NKX3-1-201ENST00000380871 WDR19Q8NEZ3 1342 aa18.64■□□□□ 0.57
NKX3-1-201ENST00000380871 UBAP1LF5GYI3 381 aa18.64■□□□□ 0.57
NKX3-1-201ENST00000380871 TOB1P50616 345 aaPredicted RBP18.64■□□□□ 0.57
NKX3-1-201ENST00000380871 ADKP55263 362 aaKnown RBP18.64■□□□□ 0.57
NKX3-1-201ENST00000380871 JMYQ8N9B5 988 aa18.64■□□□□ 0.57
NKX3-1-201ENST00000380871 NACAP1Q9BZK3 213 aa18.64■□□□□ 0.57
NKX3-1-201ENST00000380871 ROBO1Q9Y6N7 1651 aa18.63■□□□□ 0.57
NKX3-1-201ENST00000380871 VWA3AA6NCI4 1184 aa18.63■□□□□ 0.57
NKX3-1-201ENST00000380871 CDKL5O76039 1030 aa18.63■□□□□ 0.57
NKX3-1-201ENST00000380871 SEC31AO94979 1220 aaKnown RBP18.63■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms