RNA–Protein interactions for RNA: ENST00000377670.8

HIF3A-205, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HIF3A, Length 5,852 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-205ENST00000377670 SKIV2LQ15477 1246 aaKnown RBP12.18□□□□□ -0.46
HIF3A-205ENST00000377670 MICALL1Q8N3F8 863 aa12.18□□□□□ -0.46
HIF3A-205ENST00000377670 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.17□□□□□ -0.46
HIF3A-205ENST00000377670 SLC27A2O14975 620 aa12.17□□□□□ -0.46
HIF3A-205ENST00000377670 AKNAD1Q5T1N1 836 aa12.17□□□□□ -0.46
HIF3A-205ENST00000377670 NAA15Q9BXJ9 866 aaKnown RBP12.17□□□□□ -0.46
HIF3A-205ENST00000377670 AP5M1Q9H0R1 490 aa12.17□□□□□ -0.46
HIF3A-205ENST00000377670 MAP3K4Q9Y6R4 1608 aa12.17□□□□□ -0.46
HIF3A-205ENST00000377670 AATKQ6ZMQ8 1374 aa12.17□□□□□ -0.46
HIF3A-205ENST00000377670 HSF2BPO75031 334 aa12.17□□□□□ -0.46
HIF3A-205ENST00000377670 KRT79Q5XKE5 535 aa12.17□□□□□ -0.46
HIF3A-205ENST00000377670 FAM114A1Q8IWE2 563 aa12.17□□□□□ -0.46
HIF3A-205ENST00000377670 RTKN2Q8IZC4 609 aa12.17□□□□□ -0.46
HIF3A-205ENST00000377670 PUS3Q9BZE2 481 aaKnown RBP12.17□□□□□ -0.46
HIF3A-205ENST00000377670 ATP7BP35670 1465 aa12.17□□□□□ -0.46
HIF3A-205ENST00000377670 RAD50Q92878 1312 aa12.17□□□□□ -0.46
HIF3A-205ENST00000377670 STK25O00506 426 aa12.17□□□□□ -0.46
HIF3A-205ENST00000377670 F13A1P00488 732 aa12.17□□□□□ -0.46
HIF3A-205ENST00000377670 EN1Q05925 392 aaPredicted RBP12.17□□□□□ -0.46
HIF3A-205ENST00000377670 GIGYF2Q6Y7W6 1299 aaKnown RBP12.17□□□□□ -0.46
HIF3A-205ENST00000377670 RNF17Q9BXT8 1623 aaKnown RBP12.17□□□□□ -0.46
HIF3A-205ENST00000377670 ERBB3P21860 1342 aa12.17□□□□□ -0.46
HIF3A-205ENST00000377670 CCDC172P0C7W6 258 aa12.17□□□□□ -0.46
HIF3A-205ENST00000377670 TBC1D5Q92609 795 aa12.17□□□□□ -0.46
HIF3A-205ENST00000377670 TAOK3Q9H2K8 898 aa12.17□□□□□ -0.46
HIF3A-205ENST00000377670 TLR7Q9NYK1 1049 aaKnown RBP12.17□□□□□ -0.46
HIF3A-205ENST00000377670 TRPM1Q7Z4N2 1603 aa12.17□□□□□ -0.46
HIF3A-205ENST00000377670 AFMP43652 599 aa12.17□□□□□ -0.46
HIF3A-205ENST00000377670 ZBTB33Q86T24 672 aa12.17□□□□□ -0.46
HIF3A-205ENST00000377670 MSANTD4Q8NCY6 345 aa12.17□□□□□ -0.46
HIF3A-205ENST00000377670 IFT74Q96LB3 600 aa12.17□□□□□ -0.46
HIF3A-205ENST00000377670 AATFQ9NY61 560 aaKnown RBP eCLIP12.17□□□□□ -0.46
HIF3A-205ENST00000377670 DACT1Q9NYF0 836 aa12.17□□□□□ -0.46
HIF3A-205ENST00000377670 CEP152O94986 1710 aa12.17□□□□□ -0.46
HIF3A-205ENST00000377670 SGSM2O43147 1006 aa12.16□□□□□ -0.46
HIF3A-205ENST00000377670 BMP15O95972 392 aa12.16□□□□□ -0.46
HIF3A-205ENST00000377670 R3HDM1Q15032 1099 aaKnown RBP12.16□□□□□ -0.46
HIF3A-205ENST00000377670 MLXIPQ9HAP2 919 aa12.16□□□□□ -0.46
HIF3A-205ENST00000377670 RRAGDQ9NQL2 400 aaPredicted RBP12.16□□□□□ -0.46
HIF3A-205ENST00000377670 CAPN2P17655 700 aa12.16□□□□□ -0.46
HIF3A-205ENST00000377670 KCTD2Q14681 263 aa12.16□□□□□ -0.46
HIF3A-205ENST00000377670 SPECC1LQ69YQ0 1117 aa12.16□□□□□ -0.46
HIF3A-205ENST00000377670 DHX32Q7L7V1 743 aaKnown RBP12.16□□□□□ -0.46
HIF3A-205ENST00000377670 GOLGA1Q92805 767 aa12.16□□□□□ -0.46
HIF3A-205ENST00000377670 KIFC2Q96AC6 838 aa12.16□□□□□ -0.46
HIF3A-205ENST00000377670 CARD10Q9BWT7 1032 aa12.16□□□□□ -0.46
HIF3A-205ENST00000377670 PALM3A6NDB9 673 aaPredicted RBP12.16□□□□□ -0.46
HIF3A-205ENST00000377670 GPAA1O43292 621 aa12.16□□□□□ -0.46
HIF3A-205ENST00000377670 SLU7O95391 586 aaKnown RBP12.16□□□□□ -0.46
HIF3A-205ENST00000377670 CDAN1Q8IWY9 1227 aa12.16□□□□□ -0.46
HIF3A-205ENST00000377670 OTUD6BQ8N6M0 293 aa12.16□□□□□ -0.46
HIF3A-205ENST00000377670 GLG1Q92896 1179 aa12.16□□□□□ -0.46
HIF3A-205ENST00000377670 CHAMP1Q96JM3 812 aa12.16□□□□□ -0.46
HIF3A-205ENST00000377670 ZBTB1Q9Y2K1 713 aa12.16□□□□□ -0.46
HIF3A-205ENST00000377670 THRAP3Q9Y2W1 955 aaKnown RBP12.16□□□□□ -0.46
HIF3A-205ENST00000377670 SCNN1DP51172 638 aa12.16□□□□□ -0.46
HIF3A-205ENST00000377670 CTDSPL2Q05D32 466 aa12.16□□□□□ -0.46
HIF3A-205ENST00000377670 CIAPIN1Q6FI81 312 aa12.16□□□□□ -0.46
HIF3A-205ENST00000377670 ANKRD35Q8N283 1001 aa12.16□□□□□ -0.46
HIF3A-205ENST00000377670 PALD1Q9ULE6 856 aa12.16□□□□□ -0.46
HIF3A-205ENST00000377670 TMCO5BA8MYB1 307 aa12.16□□□□□ -0.46
HIF3A-205ENST00000377670 SYT1P21579 422 aa12.16□□□□□ -0.46
HIF3A-205ENST00000377670 HSPA1LP34931 641 aa12.16□□□□□ -0.46
HIF3A-205ENST00000377670 HSPA4P34932 840 aa12.16□□□□□ -0.46
HIF3A-205ENST00000377670 CEP112Q8N8E3 955 aa12.16□□□□□ -0.46
HIF3A-205ENST00000377670 TTC31Q49AM3 519 aaPredicted RBP12.15□□□□□ -0.46
HIF3A-205ENST00000377670 HOXD10P28358 340 aa12.15□□□□□ -0.46
HIF3A-205ENST00000377670 CRKLP46109 303 aaKnown RBP12.15□□□□□ -0.46
HIF3A-205ENST00000377670 CC2D2BQ6DHV5 1058 aa12.15□□□□□ -0.46
HIF3A-205ENST00000377670 TMC4Q7Z404 712 aa12.15□□□□□ -0.46
HIF3A-205ENST00000377670 MAPKAPK5Q8IW41 473 aa12.15□□□□□ -0.46
HIF3A-205ENST00000377670 SMAP1Q8IYB5 467 aaPredicted RBP12.15□□□□□ -0.46
HIF3A-205ENST00000377670 CHURC1Q8WUH1 139 aa12.15□□□□□ -0.46
HIF3A-205ENST00000377670 UBASH3AP57075 661 aa12.15□□□□□ -0.46
HIF3A-205ENST00000377670 PTH1RQ03431 593 aa12.15□□□□□ -0.46
HIF3A-205ENST00000377670 BRINP3Q76B58 766 aa12.15□□□□□ -0.46
HIF3A-205ENST00000377670 CEP63Q96MT8 703 aa12.15□□□□□ -0.46
HIF3A-205ENST00000377670 LRFN2Q9ULH4 789 aa12.15□□□□□ -0.46
HIF3A-205ENST00000377670 MROH5Q6ZUA9 1318 aa12.15□□□□□ -0.46
HIF3A-205ENST00000377670 hCG_1642624A0A1W2PR95 340 aa12.15□□□□□ -0.46
HIF3A-205ENST00000377670 CHMP2AO43633 222 aa12.15□□□□□ -0.46
HIF3A-205ENST00000377670 MMP10P09238 476 aa12.15□□□□□ -0.46
HIF3A-205ENST00000377670 STAT6P42226 847 aa12.15□□□□□ -0.46
HIF3A-205ENST00000377670 SSH3Q8TE77 659 aa12.15□□□□□ -0.46
HIF3A-205ENST00000377670 MRVI1Q9Y6F6 885 aa12.15□□□□□ -0.46
HIF3A-205ENST00000377670 SPHKAPQ2M3C7 1700 aa12.15□□□□□ -0.47
HIF3A-205ENST00000377670 A0A0D9SFI3 127 aa12.14□□□□□ -0.47
HIF3A-205ENST00000377670 CAVIN2O95810 425 aa12.14□□□□□ -0.47
HIF3A-205ENST00000377670 STRN3Q13033 797 aa12.14□□□□□ -0.47
HIF3A-205ENST00000377670 C10orf67Q8IYJ2 551 aa12.14□□□□□ -0.47
HIF3A-205ENST00000377670 RNF34Q969K3 372 aa12.14□□□□□ -0.47
HIF3A-205ENST00000377670 E9PCH4 1651 aa12.14□□□□□ -0.47
HIF3A-205ENST00000377670 CTAGE15A4D2H0 777 aa12.14□□□□□ -0.47
HIF3A-205ENST00000377670 IQCA1LA6NCM1 817 aa12.14□□□□□ -0.47
HIF3A-205ENST00000377670 CTAGE8P0CG41 777 aa12.14□□□□□ -0.47
HIF3A-205ENST00000377670 GNPTABQ3T906 1256 aa12.14□□□□□ -0.47
HIF3A-205ENST00000377670 HS2ST1Q7LGA3 356 aa12.14□□□□□ -0.47
HIF3A-205ENST00000377670 CTAGE6Q86UF2 777 aa12.14□□□□□ -0.47
HIF3A-205ENST00000377670 CTAGE4Q8IX94 777 aa12.14□□□□□ -0.47
HIF3A-205ENST00000377670 TSNARE1Q96NA8 513 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms