RNA–Protein interactions for RNA: ENST00000376570.8

DDR1-227, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene DDR1, Length 3,820 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-227ENST00000376570 HS1BP3Q53T59 392 aa13.36□□□□□ -0.27
DDR1-227ENST00000376570 RRAGBQ5VZM2 374 aa13.36□□□□□ -0.27
DDR1-227ENST00000376570 FRMPD2Q68DX3 1309 aaPredicted RBP13.36□□□□□ -0.27
DDR1-227ENST00000376570 CCDC196A0A1B0GTZ2 297 aa13.36□□□□□ -0.27
DDR1-227ENST00000376570 SLURP2P0DP57 97 aa13.36□□□□□ -0.27
DDR1-227ENST00000376570 LETM2Q2VYF4 491 aa13.36□□□□□ -0.27
DDR1-227ENST00000376570 CEP135Q66GS9 1140 aa13.36□□□□□ -0.27
DDR1-227ENST00000376570 RASGRP2Q7LDG7 609 aa13.36□□□□□ -0.27
DDR1-227ENST00000376570 CDK5RAP3Q96JB5 506 aa13.36□□□□□ -0.27
DDR1-227ENST00000376570 TRIM75PA6NK02 468 aa13.36□□□□□ -0.27
DDR1-227ENST00000376570 CASP7P55210 303 aa13.36□□□□□ -0.27
DDR1-227ENST00000376570 UVSSAQ2YD98 709 aa13.36□□□□□ -0.27
DDR1-227ENST00000376570 TEX35Q5T0J7 233 aa13.36□□□□□ -0.27
DDR1-227ENST00000376570 PPFIBP1Q86W92 1011 aa13.36□□□□□ -0.27
DDR1-227ENST00000376570 EPSTI1Q96J88 318 aa13.36□□□□□ -0.27
DDR1-227ENST00000376570 VPS16Q9H269 839 aa13.36□□□□□ -0.27
DDR1-227ENST00000376570 FANCLQ9NW38 375 aa13.36□□□□□ -0.27
DDR1-227ENST00000376570 UBR1Q8IWV7 1749 aa13.36□□□□□ -0.27
DDR1-227ENST00000376570 CCDC178Q5BJE1 867 aa13.35□□□□□ -0.27
DDR1-227ENST00000376570 RBM26Q5T8P6 1007 aaKnown RBP13.35□□□□□ -0.27
DDR1-227ENST00000376570 TXNRD3Q86VQ6 643 aa13.35□□□□□ -0.27
DDR1-227ENST00000376570 DRC1Q96MC2 740 aa13.35□□□□□ -0.27
DDR1-227ENST00000376570 PCDHA5Q9Y5H7 936 aa13.35□□□□□ -0.27
DDR1-227ENST00000376570 PALLDQ8WX93 1383 aa13.35□□□□□ -0.27
DDR1-227ENST00000376570 PDE4BQ07343 736 aa13.35□□□□□ -0.27
DDR1-227ENST00000376570 NOM1Q5C9Z4 860 aaKnown RBP13.35□□□□□ -0.27
DDR1-227ENST00000376570 FANCBQ8NB91 859 aa13.35□□□□□ -0.27
DDR1-227ENST00000376570 KIF23Q02241 960 aaPredicted RBP13.35□□□□□ -0.27
DDR1-227ENST00000376570 TSR1Q2NL82 804 aaKnown RBP13.35□□□□□ -0.27
DDR1-227ENST00000376570 ZNF274Q96GC6 653 aaPredicted RBP13.35□□□□□ -0.27
DDR1-227ENST00000376570 MXD3Q9BW11 206 aa13.35□□□□□ -0.27
DDR1-227ENST00000376570 USP27XA6NNY8 438 aa13.34□□□□□ -0.27
DDR1-227ENST00000376570 KRT18P05783 430 aaKnown RBP13.34□□□□□ -0.27
DDR1-227ENST00000376570 LRRC47Q8N1G4 583 aaKnown RBP13.34□□□□□ -0.27
DDR1-227ENST00000376570 MYRIPQ8NFW9 859 aa13.34□□□□□ -0.27
DDR1-227ENST00000376570 EPB41L4AQ9HCS5 686 aaPredicted RBP13.34□□□□□ -0.27
DDR1-227ENST00000376570 MED23Q9ULK4 1368 aa13.34□□□□□ -0.27
DDR1-227ENST00000376570 WDHD1O75717 1129 aaPredicted RBP13.34□□□□□ -0.27
DDR1-227ENST00000376570 TEX11Q8IYF3 940 aa13.34□□□□□ -0.27
DDR1-227ENST00000376570 KRI1Q8N9T8 703 aaKnown RBP13.34□□□□□ -0.27
DDR1-227ENST00000376570 LINC00301Q8NCQ3 95 aa13.34□□□□□ -0.27
DDR1-227ENST00000376570 WASF1Q92558 559 aa13.34□□□□□ -0.27
DDR1-227ENST00000376570 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.34□□□□□ -0.27
DDR1-227ENST00000376570 TPM1P09493 284 aa13.34□□□□□ -0.27
DDR1-227ENST00000376570 TNNI2P48788 182 aa13.34□□□□□ -0.27
DDR1-227ENST00000376570 GNG11P61952 73 aa13.34□□□□□ -0.27
DDR1-227ENST00000376570 KIAA1468Q9P260 1216 aa13.34□□□□□ -0.27
DDR1-227ENST00000376570 POLR3GO15318 223 aaPredicted RBP13.33□□□□□ -0.27
DDR1-227ENST00000376570 UBA7P41226 1012 aa13.33□□□□□ -0.27
DDR1-227ENST00000376570 NAPAP54920 295 aa13.33□□□□□ -0.27
DDR1-227ENST00000376570 SNAP25P60880 206 aa13.33□□□□□ -0.27
DDR1-227ENST00000376570 FANCCQ00597 558 aa13.33□□□□□ -0.27
DDR1-227ENST00000376570 ADGRA1Q86SQ6 560 aa13.33□□□□□ -0.27
DDR1-227ENST00000376570 PLEKHA4Q9H4M7 779 aa13.33□□□□□ -0.27
DDR1-227ENST00000376570 NFE2L3Q9Y4A8 694 aa13.33□□□□□ -0.27
DDR1-227ENST00000376570 MROH5Q6ZUA9 1318 aa13.33□□□□□ -0.28
DDR1-227ENST00000376570 KDM4FA0A1W2PPD8 638 aa13.33□□□□□ -0.28
DDR1-227ENST00000376570 GSG1L2A8MUP6 293 aa13.33□□□□□ -0.28
DDR1-227ENST00000376570 CIAO1O76071 339 aa13.33□□□□□ -0.28
DDR1-227ENST00000376570 TXLNAP40222 546 aa13.33□□□□□ -0.28
DDR1-227ENST00000376570 TNNT3P45378 269 aaPredicted RBP13.33□□□□□ -0.28
DDR1-227ENST00000376570 SNW1Q13573 536 aaKnown RBP13.33□□□□□ -0.28
DDR1-227ENST00000376570 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.33□□□□□ -0.28
DDR1-227ENST00000376570 PKD2L1Q9P0L9 805 aa13.33□□□□□ -0.28
DDR1-227ENST00000376570 TBC1D7Q9P0N9 293 aa13.33□□□□□ -0.28
DDR1-227ENST00000376570 CTAGE5O15320 804 aa13.33□□□□□ -0.28
DDR1-227ENST00000376570 NFIXQ14938 502 aa13.33□□□□□ -0.28
DDR1-227ENST00000376570 SPTY2D1Q68D10 685 aaPredicted RBP13.33□□□□□ -0.28
DDR1-227ENST00000376570 NUP88Q99567 741 aaPredicted RBP13.33□□□□□ -0.28
DDR1-227ENST00000376570 MMRN2Q9H8L6 949 aa13.33□□□□□ -0.28
DDR1-227ENST00000376570 PIK3C2AO00443 1686 aa13.32□□□□□ -0.28
DDR1-227ENST00000376570 SMTNL1A8MU46 457 aa13.32□□□□□ -0.28
DDR1-227ENST00000376570 SH2B2O14492 632 aaPredicted RBP13.32□□□□□ -0.28
DDR1-227ENST00000376570 N4BP3O15049 544 aa13.32□□□□□ -0.28
DDR1-227ENST00000376570 MECOMQ03112 1051 aa13.32□□□□□ -0.28
DDR1-227ENST00000376570 KIAA0825Q8IV33 1275 aa13.32□□□□□ -0.28
DDR1-227ENST00000376570 MB21D2Q8IYB1 491 aaPredicted RBP13.32□□□□□ -0.28
DDR1-227ENST00000376570 FNBP4Q8N3X1 1017 aaPredicted RBP13.32□□□□□ -0.28
DDR1-227ENST00000376570 PRIMPOLQ96LW4 560 aa13.32□□□□□ -0.28
DDR1-227ENST00000376570 LLPHQ9BRT6 129 aaKnown RBP13.32□□□□□ -0.28
DDR1-227ENST00000376570 CNNM2Q9H8M5 875 aa13.32□□□□□ -0.28
DDR1-227ENST00000376570 MINPP1Q9UNW1 487 aa13.32□□□□□ -0.28
DDR1-227ENST00000376570 MFSD14BQ5SR56 506 aa13.32□□□□□ -0.28
DDR1-227ENST00000376570 MST1RQ04912 1400 aa13.32□□□□□ -0.28
DDR1-227ENST00000376570 EIF5P55010 431 aaKnown RBP13.32□□□□□ -0.28
DDR1-227ENST00000376570 EXOSC10Q01780 885 aaKnown RBP13.32□□□□□ -0.28
DDR1-227ENST00000376570 ARID5AQ03989 594 aa13.32□□□□□ -0.28
DDR1-227ENST00000376570 LINC00116Q8NCU8 138 aa13.32□□□□□ -0.28
DDR1-227ENST00000376570 SMARCC1Q92922 1105 aaPredicted RBP13.32□□□□□ -0.28
DDR1-227ENST00000376570 INF2Q27J81 1249 aa13.31□□□□□ -0.28
DDR1-227ENST00000376570 PARP10Q53GL7 1025 aa13.31□□□□□ -0.28
DDR1-227ENST00000376570 ANKRD20A12PQ8NF67 263 aa13.31□□□□□ -0.28
DDR1-227ENST00000376570 CSRNP2Q9H175 543 aa13.31□□□□□ -0.28
DDR1-227ENST00000376570 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.31□□□□□ -0.288e-8■■■■□ 25.6
DDR1-227ENST00000376570 SEC63Q9UGP8 760 aaKnown RBP13.31□□□□□ -0.28
DDR1-227ENST00000376570 FER1L4A9Z1Z3 1794 aa13.31□□□□□ -0.28
DDR1-227ENST00000376570 TMEM232C9JQI7 657 aa13.31□□□□□ -0.28
DDR1-227ENST00000376570 FAM193AP78312 1265 aa13.31□□□□□ -0.28
DDR1-227ENST00000376570 PTPROQ16827 1216 aa13.31□□□□□ -0.28
DDR1-227ENST00000376570 ADALQ6DHV7 355 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms