RNA–Protein interactions for RNA: ENST00000374877.7

CCDC40-203, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC40, Length 3,544 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-203ENST00000374877 NCOA7Q8NI08 942 aa12.72□□□□□ -0.37
CCDC40-203ENST00000374877 ALG1Q9BT22 464 aa12.72□□□□□ -0.37
CCDC40-203ENST00000374877 TUBE1Q9UJT0 475 aa12.72□□□□□ -0.37
CCDC40-203ENST00000374877 ARHGAP6O43182 974 aa12.72□□□□□ -0.37
CCDC40-203ENST00000374877 OAS2P29728 719 aaKnown RBP12.72□□□□□ -0.37
CCDC40-203ENST00000374877 SHC4Q6S5L8 630 aa12.72□□□□□ -0.37
CCDC40-203ENST00000374877 JMYQ8N9B5 988 aa12.72□□□□□ -0.37
CCDC40-203ENST00000374877 WDR24Q96S15 920 aa12.72□□□□□ -0.37
CCDC40-203ENST00000374877 LRRC4BQ9NT99 713 aa12.72□□□□□ -0.37
CCDC40-203ENST00000374877 RGPD3A6NKT7 1758 aaPredicted RBP12.72□□□□□ -0.37
CCDC40-203ENST00000374877 RGPD4Q7Z3J3 1758 aa12.72□□□□□ -0.37
CCDC40-203ENST00000374877 CSF1RP07333 972 aa12.72□□□□□ -0.37
CCDC40-203ENST00000374877 MB21D2Q8IYB1 491 aaPredicted RBP12.72□□□□□ -0.37
CCDC40-203ENST00000374877 CNNM3Q8NE01 707 aa12.72□□□□□ -0.37
CCDC40-203ENST00000374877 BAG1Q99933 345 aaPredicted RBP12.72□□□□□ -0.37
CCDC40-203ENST00000374877 SASH3O75995 380 aa12.71□□□□□ -0.37
CCDC40-203ENST00000374877 ANTXR2P58335 489 aa12.71□□□□□ -0.37
CCDC40-203ENST00000374877 ST5P78524 1137 aa12.71□□□□□ -0.37
CCDC40-203ENST00000374877 PPP2R3AQ06190 1150 aa12.71□□□□□ -0.37
CCDC40-203ENST00000374877 MPHOSPH8Q99549 860 aa12.71□□□□□ -0.37
CCDC40-203ENST00000374877 TRMT112Q9UI30 125 aaKnown RBP12.71□□□□□ -0.37
CCDC40-203ENST00000374877 EYA2O00167 538 aa12.71□□□□□ -0.37
CCDC40-203ENST00000374877 TTC39AQ5SRH9 613 aa12.71□□□□□ -0.37
CCDC40-203ENST00000374877 CC2D1AQ6P1N0 951 aaPredicted RBP12.71□□□□□ -0.37
CCDC40-203ENST00000374877 PUS3Q9BZE2 481 aaKnown RBP12.71□□□□□ -0.37
CCDC40-203ENST00000374877 FBXO3Q9UK99 471 aa12.71□□□□□ -0.37
CCDC40-203ENST00000374877 ZNF213O14771 459 aa12.71□□□□□ -0.38
CCDC40-203ENST00000374877 TBC1D8O95759 1140 aa12.71□□□□□ -0.38
CCDC40-203ENST00000374877 ADKP55263 362 aaKnown RBP12.71□□□□□ -0.38
CCDC40-203ENST00000374877 FBXL16Q8N461 479 aa12.71□□□□□ -0.38
CCDC40-203ENST00000374877 PCDHA5Q9Y5H7 936 aa12.71□□□□□ -0.38
CCDC40-203ENST00000374877 SMC1AQ14683 1233 aaKnown RBP12.7□□□□□ -0.38
CCDC40-203ENST00000374877 KARSQ15046 597 aaKnown RBP12.7□□□□□ -0.38
CCDC40-203ENST00000374877 TXNRD1Q16881 649 aa12.7□□□□□ -0.38
CCDC40-203ENST00000374877 LONRF3Q496Y0 759 aa12.7□□□□□ -0.38
CCDC40-203ENST00000374877 SPECC1Q5M775 1068 aa12.7□□□□□ -0.38
CCDC40-203ENST00000374877 CCDC102BQ68D86 513 aa12.7□□□□□ -0.38
CCDC40-203ENST00000374877 KRT40Q6A162 431 aa12.7□□□□□ -0.38
CCDC40-203ENST00000374877 METTL16Q86W50 562 aaKnown RBP12.7□□□□□ -0.38
CCDC40-203ENST00000374877 FCHSD1Q86WN1 690 aa12.7□□□□□ -0.38
CCDC40-203ENST00000374877 PHKBQ93100 1093 aa12.7□□□□□ -0.38
CCDC40-203ENST00000374877 SMARCE1Q969G3 411 aa12.7□□□□□ -0.38
CCDC40-203ENST00000374877 FAM89AQ96GI7 184 aa12.7□□□□□ -0.38
CCDC40-203ENST00000374877 ZSWIM4Q9H7M6 989 aa12.7□□□□□ -0.38
CCDC40-203ENST00000374877 ARFGAP3Q9NP61 516 aa12.7□□□□□ -0.38
CCDC40-203ENST00000374877 GPR108Q9NPR9 543 aa12.7□□□□□ -0.38
CCDC40-203ENST00000374877 FOXP2O15409 715 aa12.7□□□□□ -0.38
CCDC40-203ENST00000374877 PDE8AO60658 829 aa12.7□□□□□ -0.38
CCDC40-203ENST00000374877 TRDNQ13061 729 aa12.7□□□□□ -0.38
CCDC40-203ENST00000374877 SUSD4Q5VX71 490 aa12.7□□□□□ -0.38
CCDC40-203ENST00000374877 TOGARAM2Q6ZUX3 1019 aa12.7□□□□□ -0.38
CCDC40-203ENST00000374877 DESI2Q9BSY9 194 aa12.7□□□□□ -0.38
CCDC40-203ENST00000374877 INTS13Q9NVM9 706 aa12.7□□□□□ -0.38
CCDC40-203ENST00000374877 CEP126Q9P2H0 1117 aa12.7□□□□□ -0.38
CCDC40-203ENST00000374877 NIP7Q9Y221 180 aaKnown RBP eCLIP12.7□□□□□ -0.38
CCDC40-203ENST00000374877 HPSEQ9Y251 543 aa12.7□□□□□ -0.38
CCDC40-203ENST00000374877 IRS4O14654 1257 aaPredicted RBP12.7□□□□□ -0.38
CCDC40-203ENST00000374877 ZPR1O75312 459 aa12.7□□□□□ -0.38
CCDC40-203ENST00000374877 METAP2P50579 478 aaKnown RBP eCLIP12.7□□□□□ -0.38
CCDC40-203ENST00000374877 PDE4BQ07343 736 aa12.7□□□□□ -0.38
CCDC40-203ENST00000374877 TRAPPC3LQ5T215 181 aa12.7□□□□□ -0.38
CCDC40-203ENST00000374877 TMEM139Q8IV31 216 aa12.7□□□□□ -0.38
CCDC40-203ENST00000374877 GPR161Q8N6U8 529 aaKnown RBP12.7□□□□□ -0.38
CCDC40-203ENST00000374877 DENND2AQ9ULE3 1009 aa12.7□□□□□ -0.38
CCDC40-203ENST00000374877 TNS1Q9HBL0 1735 aaKnown RBP12.69□□□□□ -0.38
CCDC40-203ENST00000374877 FOXN1O15353 648 aa12.69□□□□□ -0.38
CCDC40-203ENST00000374877 NTSR2O95665 410 aa12.69□□□□□ -0.38
CCDC40-203ENST00000374877 CAPN2P17655 700 aa12.69□□□□□ -0.38
CCDC40-203ENST00000374877 CDC27P30260 824 aa12.69□□□□□ -0.38
CCDC40-203ENST00000374877 ADORA1P30542 326 aa12.69□□□□□ -0.38
CCDC40-203ENST00000374877 GPS2Q13227 327 aa12.69□□□□□ -0.38
CCDC40-203ENST00000374877 MICU3Q86XE3 530 aa12.69□□□□□ -0.38
CCDC40-203ENST00000374877 TXLNBQ8N3L3 684 aa12.69□□□□□ -0.38
CCDC40-203ENST00000374877 ARHGEF1Q92888 912 aaKnown RBP12.69□□□□□ -0.38
CCDC40-203ENST00000374877 ZBTB9Q96C00 473 aa12.69□□□□□ -0.38
CCDC40-203ENST00000374877 CCDC85AQ96PX6 553 aaPredicted RBP12.69□□□□□ -0.38
CCDC40-203ENST00000374877 PUS7LQ9H0K6 701 aaKnown RBP12.69□□□□□ -0.38
CCDC40-203ENST00000374877 KCNH3Q9ULD8 1083 aa12.69□□□□□ -0.38
CCDC40-203ENST00000374877 CIAO1O76071 339 aa12.69□□□□□ -0.38
CCDC40-203ENST00000374877 FOXP4Q8IVH2 680 aaPredicted RBP12.69□□□□□ -0.38
CCDC40-203ENST00000374877 PARD6BQ9BYG5 372 aa12.69□□□□□ -0.38
CCDC40-203ENST00000374877 PPP6R2O75170 966 aa12.68□□□□□ -0.38
CCDC40-203ENST00000374877 GYS2P54840 703 aa12.68□□□□□ -0.38
CCDC40-203ENST00000374877 CTSWP56202 376 aa12.68□□□□□ -0.38
CCDC40-203ENST00000374877 MAP3K9P80192 1104 aa12.68□□□□□ -0.38
CCDC40-203ENST00000374877 KRBA2Q6ZNG9 492 aa12.68□□□□□ -0.38
CCDC40-203ENST00000374877 TRMT44Q8IYL2 757 aaKnown RBP12.68□□□□□ -0.38
CCDC40-203ENST00000374877 CCDC12Q8WUD4 166 aaPredicted RBP12.68□□□□□ -0.38
CCDC40-203ENST00000374877 LAMB2P55268 1798 aa12.68□□□□□ -0.38
CCDC40-203ENST00000374877 COL24A1Q17RW2 1714 aa12.68□□□□□ -0.38
CCDC40-203ENST00000374877 RTL9Q8NET4 1388 aa12.68□□□□□ -0.38
CCDC40-203ENST00000374877 GOLGA6L9A6NEM1 432 aa12.68□□□□□ -0.38
CCDC40-203ENST00000374877 ATP8B1O43520 1251 aa12.68□□□□□ -0.38
CCDC40-203ENST00000374877 APBA3O96018 575 aa12.68□□□□□ -0.38
CCDC40-203ENST00000374877 RAD51AP2Q09MP3 1159 aa12.68□□□□□ -0.38
CCDC40-203ENST00000374877 TRIM29Q14134 588 aa12.68□□□□□ -0.38
CCDC40-203ENST00000374877 PTPAQ15257 358 aa12.68□□□□□ -0.38
CCDC40-203ENST00000374877 CPLX2Q6PUV4 134 aaKnown RBP12.68□□□□□ -0.38
CCDC40-203ENST00000374877 PI16Q6UXB8 463 aa12.68□□□□□ -0.38
CCDC40-203ENST00000374877 STK11IPQ8N1F8 1099 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms