RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 DNAJC21Q5F1R6 531 aaKnown RBP9.65□□□□□ -0.86
SYNE1-206ENST00000367253 CCDC183Q5T5S1 534 aa9.65□□□□□ -0.86
SYNE1-206ENST00000367253 ESR2Q92731 530 aa9.65□□□□□ -0.86
SYNE1-206ENST00000367253 RNF34Q969K3 372 aa9.65□□□□□ -0.86
SYNE1-206ENST00000367253 RPS6KC1Q96S38 1066 aa9.65□□□□□ -0.86
SYNE1-206ENST00000367253 JPH2Q9BR39 696 aaPredicted RBP9.65□□□□□ -0.86
SYNE1-206ENST00000367253 UTP6Q9NYH9 597 aaKnown RBP9.65□□□□□ -0.86
SYNE1-206ENST00000367253 IQGAP3Q86VI3 1631 aa9.65□□□□□ -0.86
SYNE1-206ENST00000367253 SEC24BO95487 1268 aa9.65□□□□□ -0.86
SYNE1-206ENST00000367253 ATP2B3Q16720 1220 aa9.65□□□□□ -0.86
SYNE1-206ENST00000367253 MFSD6Q6ZSS7 791 aa9.65□□□□□ -0.86
SYNE1-206ENST00000367253 CCDC63Q8NA47 563 aa9.65□□□□□ -0.86
SYNE1-206ENST00000367253 KIF1BPQ96EK5 621 aa9.65□□□□□ -0.86
SYNE1-206ENST00000367253 TRAIPQ9BWF2 469 aa9.65□□□□□ -0.86
SYNE1-206ENST00000367253 UNC13BO14795 1591 aa9.65□□□□□ -0.87
SYNE1-206ENST00000367253 IFIT3O14879 490 aaKnown RBP9.65□□□□□ -0.87
SYNE1-206ENST00000367253 HIBADHP31937 336 aaKnown RBP9.65□□□□□ -0.87
SYNE1-206ENST00000367253 ATP6V1E1P36543 226 aa9.65□□□□□ -0.87
SYNE1-206ENST00000367253 RNASELQ05823 741 aaKnown RBP9.65□□□□□ -0.87
SYNE1-206ENST00000367253 GJC2Q5T442 439 aaPredicted RBP9.65□□□□□ -0.87
SYNE1-206ENST00000367253 RNF169Q8NCN4 708 aa9.65□□□□□ -0.87
SYNE1-206ENST00000367253 RAB3IL1Q8TBN0 382 aa9.65□□□□□ -0.87
SYNE1-206ENST00000367253 ABTB1Q969K4 478 aaPredicted RBP9.65□□□□□ -0.87
SYNE1-206ENST00000367253 GCC1Q96CN9 775 aa9.65□□□□□ -0.87
SYNE1-206ENST00000367253 ZSCAN31Q96LW9 406 aaPredicted RBP9.65□□□□□ -0.87
SYNE1-206ENST00000367253 ADPGKQ9BRR6 497 aa9.65□□□□□ -0.87
SYNE1-206ENST00000367253 TRMT1Q9NXH9 659 aaKnown RBP9.65□□□□□ -0.87
SYNE1-206ENST00000367253 IRS4O14654 1257 aaPredicted RBP9.64□□□□□ -0.87
SYNE1-206ENST00000367253 HSF2BPO75031 334 aa9.64□□□□□ -0.87
SYNE1-206ENST00000367253 ATICP31939 592 aa9.64□□□□□ -0.87
SYNE1-206ENST00000367253 E2F5Q15329 346 aa9.64□□□□□ -0.87
SYNE1-206ENST00000367253 PROCA1Q8NCQ7 364 aaPredicted RBP9.64□□□□□ -0.87
SYNE1-206ENST00000367253 KLHDC4Q8TBB5 520 aa9.64□□□□□ -0.87
SYNE1-206ENST00000367253 EVA1BQ9NVM1 165 aa9.64□□□□□ -0.87
SYNE1-206ENST00000367253 SERPINA10Q9UK55 444 aa9.64□□□□□ -0.87
SYNE1-206ENST00000367253 TPCN1Q9ULQ1 816 aa9.64□□□□□ -0.87
SYNE1-206ENST00000367253 LUC7L2Q9Y383 392 aaKnown RBP9.64□□□□□ -0.87
SYNE1-206ENST00000367253 SNW1Q13573 536 aaKnown RBP9.64□□□□□ -0.87
SYNE1-206ENST00000367253 ANKRD35Q8N283 1001 aa9.64□□□□□ -0.87
SYNE1-206ENST00000367253 SELENOSQ9BQE4 189 aa9.64□□□□□ -0.87
SYNE1-206ENST00000367253 RIOK1Q9BRS2 568 aaKnown RBP9.64□□□□□ -0.87
SYNE1-206ENST00000367253 PAIP2BQ9ULR5 123 aaKnown RBP9.64□□□□□ -0.87
SYNE1-206ENST00000367253 TFRCP02786 760 aaKnown RBP9.64□□□□□ -0.87
SYNE1-206ENST00000367253 SFSWAPQ12872 951 aaKnown RBP9.64□□□□□ -0.87
SYNE1-206ENST00000367253 NCAPG2Q86XI2 1143 aa9.64□□□□□ -0.87
SYNE1-206ENST00000367253 ANKS4BQ8N8V4 417 aa9.64□□□□□ -0.87
SYNE1-206ENST00000367253 GANCQ8TET4 914 aa9.64□□□□□ -0.87
SYNE1-206ENST00000367253 SPATA31E1Q6ZUB1 1445 aa9.64□□□□□ -0.87
SYNE1-206ENST00000367253 TET3O43151 1660 aa9.64□□□□□ -0.87
SYNE1-206ENST00000367253 CCDC171Q6TFL3 1326 aa9.64□□□□□ -0.87
SYNE1-206ENST00000367253 RARSP54136 660 aaKnown RBP9.64□□□□□ -0.87
SYNE1-206ENST00000367253 SLC27A3Q5K4L6 730 aa9.64□□□□□ -0.87
SYNE1-206ENST00000367253 C16orf87Q6PH81 154 aa9.64□□□□□ -0.87
SYNE1-206ENST00000367253 BLOC1S2Q6QNY1 142 aa9.64□□□□□ -0.87
SYNE1-206ENST00000367253 CNNM2Q9H8M5 875 aa9.64□□□□□ -0.87
SYNE1-206ENST00000367253 METTL14Q9HCE5 456 aaKnown RBP9.64□□□□□ -0.87
SYNE1-206ENST00000367253 SUFUQ9UMX1 484 aa9.64□□□□□ -0.87
SYNE1-206ENST00000367253 F8W8V4 182 aa9.63□□□□□ -0.87
SYNE1-206ENST00000367253 ATF7P17544 494 aaPredicted RBP9.63□□□□□ -0.87
SYNE1-206ENST00000367253 GABPB1Q06547 395 aaPredicted RBP9.63□□□□□ -0.87
SYNE1-206ENST00000367253 FKBP15Q5T1M5 1219 aa9.63□□□□□ -0.87
SYNE1-206ENST00000367253 GKAP1Q5VSY0 366 aaPredicted RBP9.63□□□□□ -0.87
SYNE1-206ENST00000367253 NSMFQ6X4W1 530 aa9.63□□□□□ -0.87
SYNE1-206ENST00000367253 STIM2Q9P246 746 aa9.63□□□□□ -0.87
SYNE1-206ENST00000367253 COPB2P35606 906 aa9.63□□□□□ -0.87
SYNE1-206ENST00000367253 SMTNP53814 917 aa9.63□□□□□ -0.87
SYNE1-206ENST00000367253 GLG1Q92896 1179 aa9.63□□□□□ -0.87
SYNE1-206ENST00000367253 TESK2Q96S53 571 aa9.63□□□□□ -0.87
SYNE1-206ENST00000367253 ZNF157P51786 506 aaPredicted RBP9.63□□□□□ -0.87
SYNE1-206ENST00000367253 PPP2R1AP30153 589 aa9.63□□□□□ -0.87
SYNE1-206ENST00000367253 DUSP27Q5VZP5 1158 aa9.63□□□□□ -0.87
SYNE1-206ENST00000367253 ZNF280DQ6N043 979 aa9.63□□□□□ -0.87
SYNE1-206ENST00000367253 MIER3Q7Z3K6 550 aa9.63□□□□□ -0.87
SYNE1-206ENST00000367253 APOBEC3FQ8IUX4 373 aaKnown RBP9.63□□□□□ -0.87
SYNE1-206ENST00000367253 NOX5Q96PH1 765 aa9.63□□□□□ -0.87
SYNE1-206ENST00000367253 SH3GL3Q99963 347 aa9.63□□□□□ -0.87
SYNE1-206ENST00000367253 PLVAPQ9BX97 442 aa9.63□□□□□ -0.87
SYNE1-206ENST00000367253 PDE4DQ08499 809 aa9.62□□□□□ -0.87
SYNE1-206ENST00000367253 SMC6Q96SB8 1091 aa9.62□□□□□ -0.87
SYNE1-206ENST00000367253 GOLGA6AQ9NYA3 693 aa9.62□□□□□ -0.87
SYNE1-206ENST00000367253 USH1CQ9Y6N9 552 aa9.62□□□□□ -0.87
SYNE1-206ENST00000367253 TSPOAP1O95153 1857 aa9.62□□□□□ -0.87
SYNE1-206ENST00000367253 HMGB3O15347 200 aaKnown RBP9.62□□□□□ -0.87
SYNE1-206ENST00000367253 SMC1BQ8NDV3 1235 aa9.62□□□□□ -0.87
SYNE1-206ENST00000367253 RRP36Q96EU6 259 aaKnown RBP9.62□□□□□ -0.87
SYNE1-206ENST00000367253 MFSD1Q9H3U5 465 aa9.62□□□□□ -0.87
SYNE1-206ENST00000367253 OGFRQ9NZT2 677 aa9.62□□□□□ -0.87
SYNE1-206ENST00000367253 OPA1O60313 960 aa9.62□□□□□ -0.87
SYNE1-206ENST00000367253 ZWINTO95229 277 aa9.62□□□□□ -0.87
SYNE1-206ENST00000367253 ATXN3P54252 364 aaPredicted RBP9.62□□□□□ -0.87
SYNE1-206ENST00000367253 YARSP54577 528 aaKnown RBP9.62□□□□□ -0.87
SYNE1-206ENST00000367253 PLA2R1Q13018 1463 aa9.62□□□□□ -0.87
SYNE1-206ENST00000367253 KIF11P52732 1056 aa9.62□□□□□ -0.87
SYNE1-206ENST00000367253 MXRA7P84157 204 aa9.62□□□□□ -0.87
SYNE1-206ENST00000367253 RABEP2Q9H5N1 569 aa9.62□□□□□ -0.87
SYNE1-206ENST00000367253 EXOC1Q9NV70 894 aa9.62□□□□□ -0.87
SYNE1-206ENST00000367253 EFCAB6Q5THR3 1501 aa9.62□□□□□ -0.87
SYNE1-206ENST00000367253 YEATS4O95619 227 aa9.61□□□□□ -0.87
SYNE1-206ENST00000367253 ARL1P40616 181 aaPredicted RBP9.61□□□□□ -0.87
SYNE1-206ENST00000367253 STRN3Q13033 797 aa9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms