RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 DYNLL2Q96FJ2 89 aa23.51■■□□□ 1.35
CLN3-205ENST00000359984 TOMM22Q9NS69 142 aa23.51■■□□□ 1.35
CLN3-205ENST00000359984 GPRC5DQ9NZD1 345 aa23.51■■□□□ 1.35
CLN3-205ENST00000359984 ROBO3Q96MS0 1386 aa23.51■■□□□ 1.35
CLN3-205ENST00000359984 LARP6Q9BRS8 491 aaKnown RBP23.51■■□□□ 1.35
CLN3-205ENST00000359984 TMOD2Q9NZR1 351 aa23.51■■□□□ 1.35
CLN3-205ENST00000359984 MYH1P12882 1939 aa23.5■■□□□ 1.35
CLN3-205ENST00000359984 H7C1D1 291 aa23.5■■□□□ 1.35
CLN3-205ENST00000359984 PRC1O43663 620 aa23.5■■□□□ 1.35
CLN3-205ENST00000359984 KDM4AO75164 1064 aa23.5■■□□□ 1.35
CLN3-205ENST00000359984 PRDM1O75626 825 aa23.5■■□□□ 1.35
CLN3-205ENST00000359984 TOB2Q14106 344 aaPredicted RBP23.5■■□□□ 1.35
CLN3-205ENST00000359984 TBC1D10BQ4KMP7 808 aaPredicted RBP23.5■■□□□ 1.35
CLN3-205ENST00000359984 Q6ZUG5 572 aa23.5■■□□□ 1.35
CLN3-205ENST00000359984 ZSWIM5Q9P217 1185 aa23.5■■□□□ 1.35
CLN3-205ENST00000359984 MYO1BO43795 1136 aa23.49■■□□□ 1.35
CLN3-205ENST00000359984 ORC4O43929 436 aa23.49■■□□□ 1.35
CLN3-205ENST00000359984 ENTPD3O75355 529 aa23.49■■□□□ 1.35
CLN3-205ENST00000359984 TTC6Q86TZ1 520 aa23.49■■□□□ 1.35
CLN3-205ENST00000359984 DAXXQ9UER7 740 aaPredicted RBP23.49■■□□□ 1.35
CLN3-205ENST00000359984 TCP10L2B9ZVM9 353 aa23.49■■□□□ 1.35
CLN3-205ENST00000359984 PDE4BQ07343 736 aa23.49■■□□□ 1.35
CLN3-205ENST00000359984 WDR19Q8NEZ3 1342 aa23.48■■□□□ 1.35
CLN3-205ENST00000359984 ANKRD1Q15327 319 aa23.48■■□□□ 1.35
CLN3-205ENST00000359984 KIF4BQ2VIQ3 1234 aa23.48■■□□□ 1.35
CLN3-205ENST00000359984 SH3BP5LQ7L8J4 393 aa23.48■■□□□ 1.35
CLN3-205ENST00000359984 LIMCH1Q9UPQ0 1083 aa23.48■■□□□ 1.35
CLN3-205ENST00000359984 EPS15P42566 896 aa23.47■■□□□ 1.35
CLN3-205ENST00000359984 FKBP1CQ5VVH2 108 aa23.47■■□□□ 1.35
CLN3-205ENST00000359984 C16orf86Q6ZW13 317 aa23.47■■□□□ 1.35
CLN3-205ENST00000359984 SLC44A5Q8NCS7 719 aa23.47■■□□□ 1.35
CLN3-205ENST00000359984 ESR2Q92731 530 aa23.47■■□□□ 1.35
CLN3-205ENST00000359984 TMX3Q96JJ7 454 aa23.47■■□□□ 1.35
CLN3-205ENST00000359984 AGXT2Q9BYV1 514 aa23.47■■□□□ 1.35
CLN3-205ENST00000359984 VEZTQ9HBM0 779 aa23.47■■□□□ 1.35
CLN3-205ENST00000359984 DDTLA6NHG4 134 aaPredicted RBP23.47■■□□□ 1.35
CLN3-205ENST00000359984 FGD1P98174 961 aa23.47■■□□□ 1.35
CLN3-205ENST00000359984 FBXL16Q8N461 479 aa23.47■■□□□ 1.35
CLN3-205ENST00000359984 DHX36Q9H2U1 1008 aaKnown RBP23.47■■□□□ 1.35
CLN3-205ENST00000359984 GPHNQ9NQX3 736 aaPredicted RBP23.47■■□□□ 1.35
CLN3-205ENST00000359984 RANBP6O60518 1105 aaKnown RBP23.46■■□□□ 1.35
CLN3-205ENST00000359984 CDK8P49336 464 aa23.46■■□□□ 1.35
CLN3-205ENST00000359984 GABPAQ06546 454 aa23.46■■□□□ 1.35
CLN3-205ENST00000359984 BRF1Q92994 677 aa23.46■■□□□ 1.35
CLN3-205ENST00000359984 ZC3H4Q9UPT8 1303 aaKnown RBP23.46■■□□□ 1.35
CLN3-205ENST00000359984 HLA-DOAP06340 250 aa23.45■■□□□ 1.35
CLN3-205ENST00000359984 DPY19L2Q6NUT2 758 aa23.45■■□□□ 1.35
CLN3-205ENST00000359984 ZSCAN29Q8IWY8 852 aaPredicted RBP23.45■■□□□ 1.35
CLN3-205ENST00000359984 FAM151AQ8WW52 585 aa23.45■■□□□ 1.35
CLN3-205ENST00000359984 MKNK2Q9HBH9 465 aa23.45■■□□□ 1.35
CLN3-205ENST00000359984 TPCN1Q9ULQ1 816 aa23.45■■□□□ 1.35
CLN3-205ENST00000359984 CNTNAP1P78357 1384 aa23.45■■□□□ 1.34
CLN3-205ENST00000359984 TRPM4Q8TD43 1214 aa23.45■■□□□ 1.34
CLN3-205ENST00000359984 ASTN2O75129 1339 aaPredicted RBP23.45■■□□□ 1.34
CLN3-205ENST00000359984 ATRNL1Q5VV63 1379 aa23.44■■□□□ 1.34
CLN3-205ENST00000359984 IGDCC4Q8TDY8 1250 aa23.44■■□□□ 1.34
CLN3-205ENST00000359984 TMEM87BQ96K49 555 aa23.44■■□□□ 1.34
CLN3-205ENST00000359984 EHD4Q9H223 541 aa23.44■■□□□ 1.34
CLN3-205ENST00000359984 SERPINB13Q9UIV8 391 aa23.44■■□□□ 1.34
CLN3-205ENST00000359984 COL2A1P02458 1487 aaPredicted RBP23.44■■□□□ 1.34
CLN3-205ENST00000359984 LARGE1O95461 756 aa23.43■■□□□ 1.34
CLN3-205ENST00000359984 RASA1P20936 1047 aa23.43■■□□□ 1.34
CLN3-205ENST00000359984 FAM47AQ5JRC9 791 aa23.43■■□□□ 1.34
CLN3-205ENST00000359984 FAM83AQ86UY5 434 aa23.43■■□□□ 1.34
CLN3-205ENST00000359984 ZNF287Q9HBT7 754 aa23.43■■□□□ 1.34
CLN3-205ENST00000359984 PI4KBQ9UBF8 816 aa23.43■■□□□ 1.34
CLN3-205ENST00000359984 SH2B2O14492 632 aaPredicted RBP23.43■■□□□ 1.34
CLN3-205ENST00000359984 LMOD1P29536 600 aaPredicted RBP23.43■■□□□ 1.34
CLN3-205ENST00000359984 ZSCAN31Q96LW9 406 aaPredicted RBP23.43■■□□□ 1.34
CLN3-205ENST00000359984 ZKSCAN3Q9BRR0 538 aa23.43■■□□□ 1.34
CLN3-205ENST00000359984 IFIT3O14879 490 aaKnown RBP23.42■■□□□ 1.34
CLN3-205ENST00000359984 SLURP2P0DP57 97 aa23.42■■□□□ 1.34
CLN3-205ENST00000359984 APOBRQ0VD83 1088 aa23.42■■□□□ 1.34
CLN3-205ENST00000359984 ME3Q16798 604 aa23.42■■□□□ 1.34
CLN3-205ENST00000359984 ZNF444Q8N0Y2 327 aaPredicted RBP23.42■■□□□ 1.34
CLN3-205ENST00000359984 SPRYD3Q8NCJ5 442 aa23.42■■□□□ 1.34
CLN3-205ENST00000359984 MTA3Q9BTC8 594 aa23.42■■□□□ 1.34
CLN3-205ENST00000359984 HACL1Q9UJ83 578 aa23.42■■□□□ 1.34
CLN3-205ENST00000359984 ANGEL1Q9UNK9 670 aaKnown RBP23.42■■□□□ 1.34
CLN3-205ENST00000359984 NT5C2P49902 561 aa23.41■■□□□ 1.34
CLN3-205ENST00000359984 HIRAP54198 1017 aaPredicted RBP23.41■■□□□ 1.34
CLN3-205ENST00000359984 TFAP4Q01664 338 aa23.41■■□□□ 1.34
CLN3-205ENST00000359984 TMEM67Q5HYA8 995 aa23.41■■□□□ 1.34
CLN3-205ENST00000359984 L3MBTL3Q96JM7 780 aaPredicted RBP23.41■■□□□ 1.34
CLN3-205ENST00000359984 SWAP70Q9UH65 585 aa23.41■■□□□ 1.34
CLN3-205ENST00000359984 SCAF8Q9UPN6 1271 aaKnown RBP23.41■■□□□ 1.34
CLN3-205ENST00000359984 GLTPD2A6NH11 291 aa23.41■■□□□ 1.34
CLN3-205ENST00000359984 TSPY2A6NKD2 308 aa23.41■■□□□ 1.34
CLN3-205ENST00000359984 FOXP4Q8IVH2 680 aaPredicted RBP23.41■■□□□ 1.34
CLN3-205ENST00000359984 UBAC1Q9BSL1 405 aa23.41■■□□□ 1.34
CLN3-205ENST00000359984 TMEM39BQ9GZU3 492 aa23.41■■□□□ 1.34
CLN3-205ENST00000359984 LY9Q9HBG7 655 aa23.41■■□□□ 1.34
CLN3-205ENST00000359984 SENP2Q9HC62 589 aa23.41■■□□□ 1.34
CLN3-205ENST00000359984 ADARB2Q9NS39 739 aaKnown RBP23.41■■□□□ 1.34
CLN3-205ENST00000359984 CUL4AQ13619 759 aa23.4■■□□□ 1.34
CLN3-205ENST00000359984 SART3Q15020 963 aaKnown RBP23.4■■□□□ 1.34
CLN3-205ENST00000359984 METTL16Q86W50 562 aaKnown RBP23.4■■□□□ 1.34
CLN3-205ENST00000359984 CSRNP1Q96S65 589 aa23.4■■□□□ 1.34
CLN3-205ENST00000359984 DNAJC18Q9H819 358 aa23.4■■□□□ 1.34
CLN3-205ENST00000359984 SH2B1Q9NRF2 756 aaPredicted RBP23.4■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms