RNA–Protein interactions for RNA: ENST00000359082.3

SHANK1-202, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 5 BASIC

Gene SHANK1, Length 6,459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-202ENST00000359082 HAUS3Q68CZ6 603 aa20.48■□□□□ 0.87
SHANK1-202ENST00000359082 ACTN4O43707 911 aaKnown RBP20.48■□□□□ 0.87
SHANK1-202ENST00000359082 USH1GQ495M9 461 aa20.48■□□□□ 0.87
SHANK1-202ENST00000359082 CEP128Q6ZU80 1094 aa20.48■□□□□ 0.87
SHANK1-202ENST00000359082 ARHGEF35A5YM69 484 aa20.48■□□□□ 0.87
SHANK1-202ENST00000359082 SECISBP2LQ93073 1101 aaKnown RBP20.48■□□□□ 0.87
SHANK1-202ENST00000359082 RLBP1P12271 317 aa20.48■□□□□ 0.87
SHANK1-202ENST00000359082 INTS4Q96HW7 963 aaKnown RBP20.48■□□□□ 0.87
SHANK1-202ENST00000359082 PPP1R2P41236 205 aa20.48■□□□□ 0.87
SHANK1-202ENST00000359082 TRAPPC3LQ5T215 181 aa20.48■□□□□ 0.87
SHANK1-202ENST00000359082 KLHL7Q8IXQ5 586 aa20.48■□□□□ 0.87
SHANK1-202ENST00000359082 NOX5Q96PH1 765 aa20.48■□□□□ 0.87
SHANK1-202ENST00000359082 TMCO4Q5TGY1 634 aa20.47■□□□□ 0.87
SHANK1-202ENST00000359082 DYMQ7RTS9 669 aa20.47■□□□□ 0.87
SHANK1-202ENST00000359082 TBC1D31Q96DN5 1066 aa20.47■□□□□ 0.87
SHANK1-202ENST00000359082 TRIM6Q9C030 488 aaPredicted RBP20.47■□□□□ 0.87
SHANK1-202ENST00000359082 ZNF408Q9H9D4 720 aa20.47■□□□□ 0.87
SHANK1-202ENST00000359082 A0A1B0GUL7 405 aa20.47■□□□□ 0.87
SHANK1-202ENST00000359082 GBP1P32455 592 aa20.47■□□□□ 0.87
SHANK1-202ENST00000359082 TTC36A6NLP5 189 aa20.47■□□□□ 0.87
SHANK1-202ENST00000359082 NOP56O00567 594 aaKnown RBP20.47■□□□□ 0.87
SHANK1-202ENST00000359082 SATB1Q01826 763 aa20.47■□□□□ 0.87
SHANK1-202ENST00000359082 SF3A3Q12874 501 aaKnown RBP eCLIP20.47■□□□□ 0.87
SHANK1-202ENST00000359082 PCDH11XQ9BZA7 1347 aa20.47■□□□□ 0.87
SHANK1-202ENST00000359082 PCDH11YQ9BZA8 1340 aa20.47■□□□□ 0.87
SHANK1-202ENST00000359082 HS1BP3Q53T59 392 aa20.47■□□□□ 0.87
SHANK1-202ENST00000359082 RILPL1Q5EBL4 403 aa20.47■□□□□ 0.87
SHANK1-202ENST00000359082 FAM89AQ96GI7 184 aa20.47■□□□□ 0.87
SHANK1-202ENST00000359082 TTF2Q9UNY4 1162 aaKnown RBP20.47■□□□□ 0.87
SHANK1-202ENST00000359082 ABCC1P33527 1531 aa20.47■□□□□ 0.87
SHANK1-202ENST00000359082 VAMP4O75379 141 aa20.47■□□□□ 0.87
SHANK1-202ENST00000359082 ATL3Q6DD88 541 aa20.47■□□□□ 0.87
SHANK1-202ENST00000359082 AATFQ9NY61 560 aaKnown RBP eCLIP20.47■□□□□ 0.87
SHANK1-202ENST00000359082 FANCCQ00597 558 aa20.47■□□□□ 0.87
SHANK1-202ENST00000359082 HIBADHP31937 336 aaKnown RBP20.46■□□□□ 0.87
SHANK1-202ENST00000359082 TIMM10P62072 90 aa20.46■□□□□ 0.87
SHANK1-202ENST00000359082 POLKQ9UBT6 870 aa20.46■□□□□ 0.87
SHANK1-202ENST00000359082 TNNI3KQ59H18 835 aa20.46■□□□□ 0.87
SHANK1-202ENST00000359082 IFT20Q8IY31 132 aa20.46■□□□□ 0.87
SHANK1-202ENST00000359082 ARHGEF2Q92974 986 aaKnown RBP20.46■□□□□ 0.87
SHANK1-202ENST00000359082 CTTNBP2NLQ9P2B4 639 aa20.46■□□□□ 0.87
SHANK1-202ENST00000359082 TACC3Q9Y6A5 838 aa20.46■□□□□ 0.87
SHANK1-202ENST00000359082 FPGT-TNNI3KV9GXZ4 949 aa20.46■□□□□ 0.87
SHANK1-202ENST00000359082 KRT19P08727 400 aa20.46■□□□□ 0.87
SHANK1-202ENST00000359082 SARNPP82979 210 aaKnown RBP20.46■□□□□ 0.87
SHANK1-202ENST00000359082 RAD51AP2Q09MP3 1159 aa20.46■□□□□ 0.87
SHANK1-202ENST00000359082 TTC38Q5R3I4 469 aa20.46■□□□□ 0.87
SHANK1-202ENST00000359082 FNBP4Q8N3X1 1017 aaPredicted RBP20.46■□□□□ 0.87
SHANK1-202ENST00000359082 ASIC3Q9UHC3 531 aa20.46■□□□□ 0.87
SHANK1-202ENST00000359082 RIMS2Q9UQ26 1411 aa20.46■□□□□ 0.87
SHANK1-202ENST00000359082 MYCT1Q8N699 235 aa20.46■□□□□ 0.87
SHANK1-202ENST00000359082 CEP120Q8N960 986 aa20.46■□□□□ 0.87
SHANK1-202ENST00000359082 PSMB7Q99436 277 aa20.46■□□□□ 0.87
SHANK1-202ENST00000359082 FLT4P35916 1363 aa20.45■□□□□ 0.86
SHANK1-202ENST00000359082 PCK1P35558 622 aa20.45■□□□□ 0.86
SHANK1-202ENST00000359082 XAGE2Q96GT9 111 aa20.45■□□□□ 0.86
SHANK1-202ENST00000359082 WDR66Q8TBY9 1149 aa20.45■□□□□ 0.86
SHANK1-202ENST00000359082 MYL10Q9BUA6 226 aa20.45■□□□□ 0.86
SHANK1-202ENST00000359082 BUB1BO60566 1050 aaPredicted RBP20.45■□□□□ 0.86
SHANK1-202ENST00000359082 PUM3Q15397 648 aaKnown RBP20.45■□□□□ 0.86
SHANK1-202ENST00000359082 SDCCAG8Q86SQ7 713 aaPredicted RBP20.45■□□□□ 0.86
SHANK1-202ENST00000359082 CACNA2D3Q8IZS8 1091 aa20.45■□□□□ 0.86
SHANK1-202ENST00000359082 ERO1AQ96HE7 468 aa20.45■□□□□ 0.86
SHANK1-202ENST00000359082 ZNF594Q96JF6 807 aaPredicted RBP20.45■□□□□ 0.86
SHANK1-202ENST00000359082 RBSNQ9H1K0 784 aa20.45■□□□□ 0.86
SHANK1-202ENST00000359082 TAB2Q9NYJ8 693 aa20.45■□□□□ 0.86
SHANK1-202ENST00000359082 MYO1AQ9UBC5 1043 aa20.45■□□□□ 0.86
SHANK1-202ENST00000359082 GOLGA6CA6NDK9 693 aa20.45■□□□□ 0.86
SHANK1-202ENST00000359082 GOLGA6DP0CG33 693 aa20.45■□□□□ 0.86
SHANK1-202ENST00000359082 ARHGAP30Q7Z6I6 1101 aaPredicted RBP20.45■□□□□ 0.86
SHANK1-202ENST00000359082 CNBD1Q8NA66 436 aa20.45■□□□□ 0.86
SHANK1-202ENST00000359082 TMEM87BQ96K49 555 aa20.45■□□□□ 0.86
SHANK1-202ENST00000359082 GOLGA6AQ9NYA3 693 aa20.45■□□□□ 0.86
SHANK1-202ENST00000359082 OTUD7BQ6GQQ9 843 aa20.44■□□□□ 0.86
SHANK1-202ENST00000359082 B4GALNT4Q76KP1 1039 aa20.44■□□□□ 0.86
SHANK1-202ENST00000359082 NELFCDQ8IXH7 590 aa20.44■□□□□ 0.86
SHANK1-202ENST00000359082 DCAF5Q96JK2 942 aa20.44■□□□□ 0.86
SHANK1-202ENST00000359082 PRDM1O75626 825 aa20.44■□□□□ 0.86
SHANK1-202ENST00000359082 GCNT3O95395 438 aa20.44■□□□□ 0.86
SHANK1-202ENST00000359082 GPHNQ9NQX3 736 aaPredicted RBP20.44■□□□□ 0.86
SHANK1-202ENST00000359082 CEP104O60308 925 aa20.44■□□□□ 0.86
SHANK1-202ENST00000359082 CASC4Q6P4E1 433 aa20.44■□□□□ 0.86
SHANK1-202ENST00000359082 MIPOL1Q8TD10 442 aa20.44■□□□□ 0.86
SHANK1-202ENST00000359082 SEC24BO95487 1268 aa20.44■□□□□ 0.86
SHANK1-202ENST00000359082 HHATQ5VTY9 493 aa20.44■□□□□ 0.86
SHANK1-202ENST00000359082 AFAP1L2Q8N4X5 818 aa20.44■□□□□ 0.86
SHANK1-202ENST00000359082 CARD6Q9BX69 1037 aa20.44■□□□□ 0.86
SHANK1-202ENST00000359082 ADCY7P51828 1080 aa20.44■□□□□ 0.86
SHANK1-202ENST00000359082 SNX29Q8TEQ0 813 aa20.44■□□□□ 0.86
SHANK1-202ENST00000359082 NACA2Q9H009 215 aa20.44■□□□□ 0.86
SHANK1-202ENST00000359082 PLEKHA4Q9H4M7 779 aa20.44■□□□□ 0.86
SHANK1-202ENST00000359082 CETN3O15182 167 aa20.43■□□□□ 0.86
SHANK1-202ENST00000359082 KLHDC4Q8TBB5 520 aa20.43■□□□□ 0.86
SHANK1-202ENST00000359082 TTLL3Q9Y4R7 772 aa20.43■□□□□ 0.86
SHANK1-202ENST00000359082 UTP18Q9Y5J1 556 aaKnown RBP eCLIP20.43■□□□□ 0.86
SHANK1-202ENST00000359082 TUBBP07437 444 aa20.43■□□□□ 0.86
SHANK1-202ENST00000359082 PRKG1Q13976 671 aa20.43■□□□□ 0.86
SHANK1-202ENST00000359082 CDAN1Q8IWY9 1227 aa20.43■□□□□ 0.86
SHANK1-202ENST00000359082 SNX14Q9Y5W7 946 aa20.43■□□□□ 0.86
SHANK1-202ENST00000359082 RASSF4Q9H2L5 321 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms