RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 ZNF830Q96NB3 372 aaPredicted RBP16.83■□□□□ 0.29
COL17A1-201ENST00000353479 QRICH2Q9H0J4 1663 aa16.83■□□□□ 0.28
COL17A1-201ENST00000353479 CFBP00751 764 aa16.83■□□□□ 0.28
COL17A1-201ENST00000353479 ME3Q16798 604 aa16.83■□□□□ 0.28
COL17A1-201ENST00000353479 CMTR1Q8N1G2 835 aaKnown RBP16.83■□□□□ 0.28
COL17A1-201ENST00000353479 SUSD4Q5VX71 490 aa16.83■□□□□ 0.28
COL17A1-201ENST00000353479 NCBP1Q09161 790 aaKnown RBP16.83■□□□□ 0.28
COL17A1-201ENST00000353479 PALD1Q9ULE6 856 aa16.83■□□□□ 0.28
COL17A1-201ENST00000353479 CDC37L1Q7L3B6 337 aa16.82■□□□□ 0.28
COL17A1-201ENST00000353479 CCDC186Q7Z3E2 898 aa16.82■□□□□ 0.28
COL17A1-201ENST00000353479 ATG3Q9NT62 314 aa16.82■□□□□ 0.28
COL17A1-201ENST00000353479 MRVI1Q9Y6F6 885 aa16.82■□□□□ 0.28
COL17A1-201ENST00000353479 IVNS1ABPQ9Y6Y0 642 aa16.82■□□□□ 0.28
COL17A1-201ENST00000353479 KRT25Q7Z3Z0 450 aa16.82■□□□□ 0.28
COL17A1-201ENST00000353479 SETD1BQ9UPS6 1966 aaKnown RBP16.82■□□□□ 0.28
COL17A1-201ENST00000353479 ARID5AQ03989 594 aa16.82■□□□□ 0.28
COL17A1-201ENST00000353479 UBE3CQ15386 1083 aa16.82■□□□□ 0.28
COL17A1-201ENST00000353479 CCDC65Q8IXS2 484 aa16.82■□□□□ 0.28
COL17A1-201ENST00000353479 BIN2Q9UBW5 565 aaPredicted RBP16.82■□□□□ 0.28
COL17A1-201ENST00000353479 KCNH3Q9ULD8 1083 aa16.82■□□□□ 0.28
COL17A1-201ENST00000353479 GOLGA6L9A6NEM1 432 aa16.82■□□□□ 0.28
COL17A1-201ENST00000353479 DDX39AO00148 427 aaKnown RBP16.82■□□□□ 0.28
COL17A1-201ENST00000353479 PTGS1P23219 599 aa16.82■□□□□ 0.28
COL17A1-201ENST00000353479 FNBP4Q8N3X1 1017 aaPredicted RBP16.82■□□□□ 0.28
COL17A1-201ENST00000353479 IMPG2Q9BZV3 1241 aa16.82■□□□□ 0.28
COL17A1-201ENST00000353479 SYNCQ9H7C4 482 aa16.82■□□□□ 0.28
COL17A1-201ENST00000353479 NCAPD2Q15021 1401 aa16.81■□□□□ 0.28
COL17A1-201ENST00000353479 BBOX1O75936 387 aa16.81■□□□□ 0.28
COL17A1-201ENST00000353479 GNG11P61952 73 aa16.81■□□□□ 0.28
COL17A1-201ENST00000353479 HLFQ16534 295 aa16.81■□□□□ 0.28
COL17A1-201ENST00000353479 NCAPH2Q6IBW4 605 aa16.81■□□□□ 0.28
COL17A1-201ENST00000353479 JADE2Q9NQC1 790 aa16.81■□□□□ 0.28
COL17A1-201ENST00000353479 STAP2Q9UGK3 403 aa16.81■□□□□ 0.28
COL17A1-201ENST00000353479 PPRC1Q5VV67 1664 aaKnown RBP16.81■□□□□ 0.28
COL17A1-201ENST00000353479 DBNDD1Q9H9R9 158 aa16.81■□□□□ 0.28
COL17A1-201ENST00000353479 UBXN1Q04323 297 aa16.81■□□□□ 0.28
COL17A1-201ENST00000353479 DPY19L2Q6NUT2 758 aa16.81■□□□□ 0.28
COL17A1-201ENST00000353479 GBP3Q9H0R5 595 aa16.81■□□□□ 0.28
COL17A1-201ENST00000353479 LMTK2Q8IWU2 1503 aa16.81■□□□□ 0.28
COL17A1-201ENST00000353479 TNKSO95271 1327 aa16.81■□□□□ 0.28
COL17A1-201ENST00000353479 CYLC1P35663 651 aaPredicted RBP16.81■□□□□ 0.28
COL17A1-201ENST00000353479 LEKR1Q6ZMV7 388 aa16.81■□□□□ 0.28
COL17A1-201ENST00000353479 GTF3C6Q969F1 213 aa16.81■□□□□ 0.28
COL17A1-201ENST00000353479 CRACR2AQ9BSW2 395 aa16.81■□□□□ 0.28
COL17A1-201ENST00000353479 SSH2Q76I76 1423 aa16.8■□□□□ 0.28
COL17A1-201ENST00000353479 FRMPD2Q68DX3 1309 aaPredicted RBP16.8■□□□□ 0.28
COL17A1-201ENST00000353479 GBP2P32456 591 aaPredicted RBP16.8■□□□□ 0.28
COL17A1-201ENST00000353479 HAUS3Q68CZ6 603 aa16.8■□□□□ 0.28
COL17A1-201ENST00000353479 LRRC47Q8N1G4 583 aaKnown RBP16.8■□□□□ 0.28
COL17A1-201ENST00000353479 GTPBP4Q9BZE4 634 aaKnown RBP16.8■□□□□ 0.28
COL17A1-201ENST00000353479 SKILP12757 684 aa16.8■□□□□ 0.28
COL17A1-201ENST00000353479 PTPN12Q05209 780 aaKnown RBP16.8■□□□□ 0.28
COL17A1-201ENST00000353479 TMCO3Q6UWJ1 677 aa16.8■□□□□ 0.28
COL17A1-201ENST00000353479 ANTXR1Q9H6X2 564 aa16.8■□□□□ 0.28
COL17A1-201ENST00000353479 CA8P35219 290 aa16.8■□□□□ 0.28
COL17A1-201ENST00000353479 CERKLQ49MI3 558 aaPredicted RBP16.8■□□□□ 0.28
COL17A1-201ENST00000353479 GSTTP1A0A1W2PQM5 241 aa16.8■□□□□ 0.28
COL17A1-201ENST00000353479 POLR2DO15514 142 aaKnown RBP16.8■□□□□ 0.28
COL17A1-201ENST00000353479 IRX3P78415 501 aaPredicted RBP16.8■□□□□ 0.28
COL17A1-201ENST00000353479 CSADQ9Y600 493 aa16.8■□□□□ 0.28
COL17A1-201ENST00000353479 SEMA3EO15041 775 aa16.79■□□□□ 0.28
COL17A1-201ENST00000353479 PI16Q6UXB8 463 aa16.79■□□□□ 0.28
COL17A1-201ENST00000353479 ATF5Q9Y2D1 282 aaPredicted RBP16.79■□□□□ 0.28
COL17A1-201ENST00000353479 PDE4DQ08499 809 aa16.79■□□□□ 0.28
COL17A1-201ENST00000353479 H0YHG0 523 aa16.79■□□□□ 0.28
COL17A1-201ENST00000353479 REXO1Q8N1G1 1221 aaKnown RBP16.79■□□□□ 0.28
COL17A1-201ENST00000353479 PNMA1Q8ND90 353 aa16.79■□□□□ 0.28
COL17A1-201ENST00000353479 LRWD1Q9UFC0 647 aa16.79■□□□□ 0.28
COL17A1-201ENST00000353479 ATP10DQ9P241 1426 aa16.79■□□□□ 0.28
COL17A1-201ENST00000353479 CUTAO60888 179 aa16.79■□□□□ 0.28
COL17A1-201ENST00000353479 RPS6KA4O75676 772 aa16.79■□□□□ 0.28
COL17A1-201ENST00000353479 TMC4Q7Z404 712 aa16.79■□□□□ 0.28
COL17A1-201ENST00000353479 CPSF1Q10570 1443 aaKnown RBP16.78■□□□□ 0.28
COL17A1-201ENST00000353479 ZNF274Q96GC6 653 aaPredicted RBP16.78■□□□□ 0.28
COL17A1-201ENST00000353479 TSPYL1Q9H0U9 437 aa16.78■□□□□ 0.28
COL17A1-201ENST00000353479 IFNKQ9P0W0 207 aa16.78■□□□□ 0.28
COL17A1-201ENST00000353479 SMCO2A6NFE2 343 aa16.78■□□□□ 0.28
COL17A1-201ENST00000353479 GOLGA8HP0CJ92 632 aa16.78■□□□□ 0.28
COL17A1-201ENST00000353479 ZMYM1Q5SVZ6 1142 aa16.78■□□□□ 0.28
COL17A1-201ENST00000353479 LEO1Q8WVC0 666 aaPredicted RBP16.78■□□□□ 0.28
COL17A1-201ENST00000353479 CTNND2Q9UQB3 1225 aa16.78■□□□□ 0.28
COL17A1-201ENST00000353479 DCAF17Q5H9S7 520 aaPredicted RBP16.78■□□□□ 0.28
COL17A1-201ENST00000353479 SNX29Q8TEQ0 813 aa16.78■□□□□ 0.28
COL17A1-201ENST00000353479 BCORL1Q5H9F3 1711 aa16.78■□□□□ 0.28
COL17A1-201ENST00000353479 CLRN2A0PK11 232 aa16.78■□□□□ 0.28
COL17A1-201ENST00000353479 CALCRLQ16602 461 aa16.78■□□□□ 0.28
COL17A1-201ENST00000353479 DPH6Q7L8W6 267 aa16.78■□□□□ 0.28
COL17A1-201ENST00000353479 CCDC169A6NNP5 214 aa16.77■□□□□ 0.28
COL17A1-201ENST00000353479 M0R2C6 588 aa16.77■□□□□ 0.28
COL17A1-201ENST00000353479 TRAF5O00463 557 aa16.77■□□□□ 0.28
COL17A1-201ENST00000353479 NOP56O00567 594 aaKnown RBP16.77■□□□□ 0.28
COL17A1-201ENST00000353479 MMP10P09238 476 aa16.77■□□□□ 0.28
COL17A1-201ENST00000353479 HARSP12081 509 aaKnown RBP16.77■□□□□ 0.28
COL17A1-201ENST00000353479 DYNLL1P63167 89 aaKnown RBP16.77■□□□□ 0.28
COL17A1-201ENST00000353479 IFI16Q16666 785 aaKnown RBP16.77■□□□□ 0.28
COL17A1-201ENST00000353479 FANCBQ8NB91 859 aa16.77■□□□□ 0.28
COL17A1-201ENST00000353479 NEK11Q8NG66 645 aa16.77■□□□□ 0.28
COL17A1-201ENST00000353479 CHURC1Q8WUH1 139 aa16.77■□□□□ 0.28
COL17A1-201ENST00000353479 ADD1P35611 737 aaKnown RBP16.77■□□□□ 0.28
COL17A1-201ENST00000353479 EHBP1Q8NDI1 1231 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms