RNA–Protein interactions for RNA: ENST00000343765.6

VIPAS39-202, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,761 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-202ENST00000343765 ECM29Q5VYK3 1845 aa17.18■□□□□ 0.34
VIPAS39-202ENST00000343765 MMP1P03956 469 aa17.18■□□□□ 0.34
VIPAS39-202ENST00000343765 CLEC4GQ6UXB4 293 aa17.18■□□□□ 0.34
VIPAS39-202ENST00000343765 BARGINQ6ZT62 677 aa17.18■□□□□ 0.34
VIPAS39-202ENST00000343765 WASF1Q92558 559 aa17.18■□□□□ 0.34
VIPAS39-202ENST00000343765 BSDC1Q9NW68 430 aaPredicted RBP17.18■□□□□ 0.34
VIPAS39-202ENST00000343765 TFCP2L1Q9NZI6 479 aa17.18■□□□□ 0.34
VIPAS39-202ENST00000343765 FANCBQ8NB91 859 aa17.17■□□□□ 0.34
VIPAS39-202ENST00000343765 FAM84BQ96KN1 310 aaPredicted RBP17.17■□□□□ 0.34
VIPAS39-202ENST00000343765 TIAM2Q8IVF5 1701 aa17.17■□□□□ 0.34
VIPAS39-202ENST00000343765 RIOK3O14730 519 aaKnown RBP17.17■□□□□ 0.34
VIPAS39-202ENST00000343765 EVX2Q03828 476 aa17.17■□□□□ 0.34
VIPAS39-202ENST00000343765 UBE4AQ14139 1066 aa17.17■□□□□ 0.34
VIPAS39-202ENST00000343765 TPD52L1Q16890 204 aaPredicted RBP17.17■□□□□ 0.34
VIPAS39-202ENST00000343765 CRACR2BQ8N4Y2 399 aaPredicted RBP17.17■□□□□ 0.34
VIPAS39-202ENST00000343765 ESR2Q92731 530 aa17.17■□□□□ 0.34
VIPAS39-202ENST00000343765 RIOK1Q9BRS2 568 aaKnown RBP17.17■□□□□ 0.34
VIPAS39-202ENST00000343765 IFNKQ9P0W0 207 aa17.17■□□□□ 0.34
VIPAS39-202ENST00000343765 HPSEQ9Y251 543 aa17.17■□□□□ 0.34
VIPAS39-202ENST00000343765 LMOD1P29536 600 aaPredicted RBP17.17■□□□□ 0.34
VIPAS39-202ENST00000343765 GRIN1Q05586 938 aa17.17■□□□□ 0.34
VIPAS39-202ENST00000343765 SF3B3Q15393 1217 aaKnown RBP17.17■□□□□ 0.34
VIPAS39-202ENST00000343765 RESP18Q5W5W9 173 aa17.17■□□□□ 0.34
VIPAS39-202ENST00000343765 NBPF11Q86T75 865 aa17.17■□□□□ 0.34
VIPAS39-202ENST00000343765 OXER1Q8TDS5 423 aa17.17■□□□□ 0.34
VIPAS39-202ENST00000343765 C8orf37Q96NL8 207 aa17.17■□□□□ 0.34
VIPAS39-202ENST00000343765 PDCL3Q9H2J4 239 aa17.17■□□□□ 0.34
VIPAS39-202ENST00000343765 SKILP12757 684 aa17.16■□□□□ 0.34
VIPAS39-202ENST00000343765 TOB1P50616 345 aaPredicted RBP17.16■□□□□ 0.34
VIPAS39-202ENST00000343765 LONRF3Q496Y0 759 aa17.16■□□□□ 0.34
VIPAS39-202ENST00000343765 ZNF384Q8TF68 577 aa17.16■□□□□ 0.34
VIPAS39-202ENST00000343765 XPO4Q9C0E2 1151 aaKnown RBP17.16■□□□□ 0.34
VIPAS39-202ENST00000343765 DEXIO95424 95 aa17.16■□□□□ 0.34
VIPAS39-202ENST00000343765 SLC4A8Q2Y0W8 1093 aa17.16■□□□□ 0.34
VIPAS39-202ENST00000343765 CNNM3Q8NE01 707 aa17.16■□□□□ 0.34
VIPAS39-202ENST00000343765 KCNH3Q9ULD8 1083 aa17.16■□□□□ 0.34
VIPAS39-202ENST00000343765 CICQ96RK0 1608 aaPredicted RBP17.16■□□□□ 0.34
VIPAS39-202ENST00000343765 RREB1Q92766 1687 aa17.15■□□□□ 0.34
VIPAS39-202ENST00000343765 CCDC196A0A1B0GTZ2 297 aa17.15■□□□□ 0.34
VIPAS39-202ENST00000343765 FOXN1O15353 648 aa17.15■□□□□ 0.34
VIPAS39-202ENST00000343765 CUTAO60888 179 aa17.15■□□□□ 0.34
VIPAS39-202ENST00000343765 RBM6P78332 1123 aaKnown RBP17.15■□□□□ 0.34
VIPAS39-202ENST00000343765 KRI1Q8N9T8 703 aaKnown RBP17.15■□□□□ 0.34
VIPAS39-202ENST00000343765 BCL2L12Q9HB09 334 aa17.15■□□□□ 0.34
VIPAS39-202ENST00000343765 USP27XA6NNY8 438 aa17.15■□□□□ 0.34
VIPAS39-202ENST00000343765 TNNT1P13805 278 aa17.15■□□□□ 0.34
VIPAS39-202ENST00000343765 NBPF5PQ86XG9 351 aaPredicted RBP17.15■□□□□ 0.34
VIPAS39-202ENST00000343765 TMTC2Q8N394 836 aa17.15■□□□□ 0.34
VIPAS39-202ENST00000343765 ENAHQ8N8S7 591 aaPredicted RBP17.15■□□□□ 0.34
VIPAS39-202ENST00000343765 PCDHB6Q9Y5E3 794 aa17.15■□□□□ 0.34
VIPAS39-202ENST00000343765 TMC6Q7Z403 805 aa17.14■□□□□ 0.33
VIPAS39-202ENST00000343765 METTL16Q86W50 562 aaKnown RBP17.14■□□□□ 0.33
VIPAS39-202ENST00000343765 RGS22Q8NE09 1264 aa17.14■□□□□ 0.33
VIPAS39-202ENST00000343765 ZNF592Q92610 1267 aa17.14■□□□□ 0.33
VIPAS39-202ENST00000343765 VPS54Q9P1Q0 977 aa17.14■□□□□ 0.33
VIPAS39-202ENST00000343765 BCORQ6W2J9 1755 aa17.14■□□□□ 0.33
VIPAS39-202ENST00000343765 TPM4P67936 248 aa17.14■□□□□ 0.33
VIPAS39-202ENST00000343765 AKAP17AQ02040 695 aaKnown RBP17.14■□□□□ 0.33
VIPAS39-202ENST00000343765 NCAPHQ15003 741 aa17.14■□□□□ 0.33
VIPAS39-202ENST00000343765 SEC23AQ15436 765 aa17.14■□□□□ 0.33
VIPAS39-202ENST00000343765 TIGD1Q96MW7 591 aa17.14■□□□□ 0.33
VIPAS39-202ENST00000343765 BPIFA3Q9BQP9 254 aa17.14■□□□□ 0.33
VIPAS39-202ENST00000343765 BCL11BQ9C0K0 894 aaPredicted RBP17.14■□□□□ 0.33
VIPAS39-202ENST00000343765 TRMT1Q9NXH9 659 aaKnown RBP17.14■□□□□ 0.33
VIPAS39-202ENST00000343765 AATFQ9NY61 560 aaKnown RBP eCLIP17.14■□□□□ 0.33
VIPAS39-202ENST00000343765 LAMB2P55268 1798 aa17.14■□□□□ 0.33
VIPAS39-202ENST00000343765 GNPATO15228 680 aa17.13■□□□□ 0.33
VIPAS39-202ENST00000343765 NPHP1O15259 732 aa17.13■□□□□ 0.33
VIPAS39-202ENST00000343765 ATP1A3P13637 1013 aa17.13■□□□□ 0.33
VIPAS39-202ENST00000343765 IFIT1BQ5T764 474 aaKnown RBP17.13■□□□□ 0.33
VIPAS39-202ENST00000343765 AMIGO3Q86WK7 504 aa17.13■□□□□ 0.33
VIPAS39-202ENST00000343765 ZSCAN10Q96SZ4 725 aaPredicted RBP17.13■□□□□ 0.33
VIPAS39-202ENST00000343765 SETDB2Q96T68 719 aa17.13■□□□□ 0.33
VIPAS39-202ENST00000343765 CABP5Q9NP86 173 aa17.13■□□□□ 0.33
VIPAS39-202ENST00000343765 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.13■□□□□ 0.33
VIPAS39-202ENST00000343765 NID2Q14112 1375 aa17.13■□□□□ 0.33
VIPAS39-202ENST00000343765 FAM205CA6NFA0 338 aa17.13■□□□□ 0.33
VIPAS39-202ENST00000343765 USP17L12C9JPN9 530 aa17.13■□□□□ 0.33
VIPAS39-202ENST00000343765 USP17L21D6R901 530 aa17.13■□□□□ 0.33
VIPAS39-202ENST00000343765 PLEKHA8P1O95397 391 aa17.13■□□□□ 0.33
VIPAS39-202ENST00000343765 RPS8P62241 208 aaKnown RBP17.13■□□□□ 0.33
VIPAS39-202ENST00000343765 NGLY1Q96IV0 654 aa17.13■□□□□ 0.33
VIPAS39-202ENST00000343765 CCZ1BP86790 482 aa17.12■□□□□ 0.33
VIPAS39-202ENST00000343765 CCZ1P86791 482 aaPredicted RBP17.12■□□□□ 0.33
VIPAS39-202ENST00000343765 MECOMQ03112 1051 aa17.12■□□□□ 0.33
VIPAS39-202ENST00000343765 KRBA2Q6ZNG9 492 aa17.12■□□□□ 0.33
VIPAS39-202ENST00000343765 PDILTQ8N807 584 aa17.12■□□□□ 0.33
VIPAS39-202ENST00000343765 NLRP3Q96P20 1036 aa17.12■□□□□ 0.33
VIPAS39-202ENST00000343765 FOXP1Q9H334 677 aaPredicted RBP17.12■□□□□ 0.33
VIPAS39-202ENST00000343765 ANAPC4Q9UJX5 808 aa17.12■□□□□ 0.33
VIPAS39-202ENST00000343765 SMTNL1A8MU46 457 aa17.12■□□□□ 0.33
VIPAS39-202ENST00000343765 NMT2O60551 498 aa17.12■□□□□ 0.33
VIPAS39-202ENST00000343765 PRDX5P30044 214 aa17.12■□□□□ 0.33
VIPAS39-202ENST00000343765 GTF2F1P35269 517 aaKnown RBP eCLIP17.12■□□□□ 0.33
VIPAS39-202ENST00000343765 CTR9Q6PD62 1173 aa17.12■□□□□ 0.33
VIPAS39-202ENST00000343765 FOXP4Q8IVH2 680 aaPredicted RBP17.12■□□□□ 0.33
VIPAS39-202ENST00000343765 SHISA4Q96DD7 197 aa17.12■□□□□ 0.33
VIPAS39-202ENST00000343765 TUBE1Q9UJT0 475 aa17.12■□□□□ 0.33
VIPAS39-202ENST00000343765 ZPR1O75312 459 aa17.11■□□□□ 0.33
VIPAS39-202ENST00000343765 PTPN21Q16825 1174 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms