RNA–Protein interactions for RNA: ENST00000343060.4

HOXA1-201, Transcript of homeobox A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA1, Length 2,517 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1-201ENST00000343060 PHF8Q9UPP1 1060 aa11.01□□□□□ -0.65
HOXA1-201ENST00000343060 JRKLQ9Y4A0 524 aa11.01□□□□□ -0.65
HOXA1-201ENST00000343060 A0A087WZG4 1122 aa11.01□□□□□ -0.65
HOXA1-201ENST00000343060 CTAGE15A4D2H0 777 aa11.01□□□□□ -0.65
HOXA1-201ENST00000343060 SEMA3EO15041 775 aa11.01□□□□□ -0.65
HOXA1-201ENST00000343060 CIAO1O76071 339 aa11.01□□□□□ -0.65
HOXA1-201ENST00000343060 PRPF6O94906 941 aaKnown RBP11.01□□□□□ -0.65
HOXA1-201ENST00000343060 PRR29P0C7W0 189 aa11.01□□□□□ -0.65
HOXA1-201ENST00000343060 CTAGE8P0CG41 777 aa11.01□□□□□ -0.65
HOXA1-201ENST00000343060 HSP90B2PQ58FF3 399 aa11.01□□□□□ -0.65
HOXA1-201ENST00000343060 RALYLQ86SE5 291 aaKnown RBP11.01□□□□□ -0.65
HOXA1-201ENST00000343060 CTAGE6Q86UF2 777 aa11.01□□□□□ -0.65
HOXA1-201ENST00000343060 CTAGE4Q8IX94 777 aa11.01□□□□□ -0.65
HOXA1-201ENST00000343060 NAPGQ99747 312 aaPredicted RBP11.01□□□□□ -0.65
HOXA1-201ENST00000343060 NID2Q14112 1375 aa11□□□□□ -0.65
HOXA1-201ENST00000343060 A0A0U1RQJ8 604 aa11□□□□□ -0.65
HOXA1-201ENST00000343060 LRRIQ3A6PVS8 624 aaPredicted RBP11□□□□□ -0.65
HOXA1-201ENST00000343060 H7C1W4 665 aa11□□□□□ -0.65
HOXA1-201ENST00000343060 SH2B2O14492 632 aaPredicted RBP11□□□□□ -0.65
HOXA1-201ENST00000343060 PTPREP23469 700 aa11□□□□□ -0.65
HOXA1-201ENST00000343060 HAND2P61296 217 aa11□□□□□ -0.65
HOXA1-201ENST00000343060 KIF4BQ2VIQ3 1234 aa11□□□□□ -0.65
HOXA1-201ENST00000343060 ZNF569Q5MCW4 686 aa11□□□□□ -0.65
HOXA1-201ENST00000343060 CDKAL1Q5VV42 579 aa11□□□□□ -0.65
HOXA1-201ENST00000343060 EFCAB13Q8IY85 973 aa11□□□□□ -0.65
HOXA1-201ENST00000343060 TRMT44Q8IYL2 757 aaKnown RBP11□□□□□ -0.65
HOXA1-201ENST00000343060 SLC35F6Q8N357 371 aa11□□□□□ -0.65
HOXA1-201ENST00000343060 ZNF579Q8NAF0 562 aaKnown RBP11□□□□□ -0.65
HOXA1-201ENST00000343060 CTCFLQ8NI51 663 aaPredicted RBP11□□□□□ -0.65
HOXA1-201ENST00000343060 ATRIPQ8WXE1 791 aa11□□□□□ -0.65
HOXA1-201ENST00000343060 NEUROD6Q96NK8 337 aa11□□□□□ -0.65
HOXA1-201ENST00000343060 SLC52A2Q9HAB3 445 aa11□□□□□ -0.65
HOXA1-201ENST00000343060 SAMSN1Q9NSI8 373 aaKnown RBP11□□□□□ -0.65
HOXA1-201ENST00000343060 ADD3Q9UEY8 706 aaKnown RBP11□□□□□ -0.65
HOXA1-201ENST00000343060 FBXO2Q9UK22 296 aaPredicted RBP11□□□□□ -0.65
HOXA1-201ENST00000343060 ANGEL1Q9UNK9 670 aaKnown RBP11□□□□□ -0.65
HOXA1-201ENST00000343060 ATRNO75882 1429 aa11□□□□□ -0.65
HOXA1-201ENST00000343060 MST1RQ04912 1400 aa11□□□□□ -0.65
HOXA1-201ENST00000343060 ZC3H4Q9UPT8 1303 aaKnown RBP11□□□□□ -0.65
HOXA1-201ENST00000343060 ACTN4O43707 911 aaKnown RBP11□□□□□ -0.65
HOXA1-201ENST00000343060 METAP2P50579 478 aaKnown RBP eCLIP11□□□□□ -0.65
HOXA1-201ENST00000343060 TIMM10P62072 90 aa11□□□□□ -0.65
HOXA1-201ENST00000343060 RBL2Q08999 1139 aa11□□□□□ -0.65
HOXA1-201ENST00000343060 NTRK3Q16288 839 aa11□□□□□ -0.65
HOXA1-201ENST00000343060 HSP90AA4PQ58FG1 418 aa11□□□□□ -0.65
HOXA1-201ENST00000343060 TAF7LQ5H9L4 462 aa11□□□□□ -0.65
HOXA1-201ENST00000343060 APPBP2Q92624 585 aa11□□□□□ -0.65
HOXA1-201ENST00000343060 NBPF3Q9H094 633 aa11□□□□□ -0.65
HOXA1-201ENST00000343060 PKD1L3Q7Z443 1732 aa11□□□□□ -0.65
HOXA1-201ENST00000343060 LRP6O75581 1613 aa10.99□□□□□ -0.65
HOXA1-201ENST00000343060 TEX33O43247 280 aa10.99□□□□□ -0.65
HOXA1-201ENST00000343060 SHOX2O60902 331 aaPredicted RBP10.99□□□□□ -0.65
HOXA1-201ENST00000343060 ATP2B1P20020 1258 aa10.99□□□□□ -0.65
HOXA1-201ENST00000343060 ARHGAP25P42331 645 aa10.99□□□□□ -0.65
HOXA1-201ENST00000343060 SLC9C2Q5TAH2 1124 aa10.99□□□□□ -0.65
HOXA1-201ENST00000343060 KANK3Q6NY19 840 aa10.99□□□□□ -0.65
HOXA1-201ENST00000343060 PPFIBP1Q86W92 1011 aa10.99□□□□□ -0.65
HOXA1-201ENST00000343060 RAB11FIP4Q86YS3 637 aa10.99□□□□□ -0.65
HOXA1-201ENST00000343060 CNGA4Q8IV77 575 aa10.99□□□□□ -0.65
HOXA1-201ENST00000343060 IGSF22Q8N9C0 903 aa10.99□□□□□ -0.65
HOXA1-201ENST00000343060 FAM204AQ9H8W3 233 aa10.99□□□□□ -0.65
HOXA1-201ENST00000343060 EYA2O00167 538 aa10.99□□□□□ -0.65
HOXA1-201ENST00000343060 SYF2O95926 243 aaKnown RBP10.99□□□□□ -0.65
HOXA1-201ENST00000343060 CUL4BQ13620 913 aa10.99□□□□□ -0.65
HOXA1-201ENST00000343060 SPATA1Q5VX52 437 aa10.99□□□□□ -0.65
HOXA1-201ENST00000343060 WWC2Q6AWC2 1192 aa10.99□□□□□ -0.65
HOXA1-201ENST00000343060 CPLX2Q6PUV4 134 aaKnown RBP10.99□□□□□ -0.65
HOXA1-201ENST00000343060 APOA5Q6Q788 366 aa10.99□□□□□ -0.65
HOXA1-201ENST00000343060 C14orf37Q86TY3 774 aa10.99□□□□□ -0.65
HOXA1-201ENST00000343060 PLBD2Q8NHP8 589 aa10.99□□□□□ -0.65
HOXA1-201ENST00000343060 CCDC102AQ96A19 550 aa10.99□□□□□ -0.65
HOXA1-201ENST00000343060 UBN2Q6ZU65 1347 aa10.99□□□□□ -0.65
HOXA1-201ENST00000343060 RANBP6O60518 1105 aaKnown RBP10.98□□□□□ -0.65
HOXA1-201ENST00000343060 RNF40O75150 1001 aa10.98□□□□□ -0.65
HOXA1-201ENST00000343060 RHOXF2BP0C7M4 288 aa10.98□□□□□ -0.65
HOXA1-201ENST00000343060 SLC39A6Q13433 755 aa10.98□□□□□ -0.65
HOXA1-201ENST00000343060 ZNF827Q17R98 1081 aa10.98□□□□□ -0.65
HOXA1-201ENST00000343060 NOSTRINQ8IVI9 506 aa10.98□□□□□ -0.65
HOXA1-201ENST00000343060 NOA1Q8NC60 698 aaKnown RBP10.98□□□□□ -0.65
HOXA1-201ENST00000343060 AFAP1L1Q8TED9 768 aa10.98□□□□□ -0.65
HOXA1-201ENST00000343060 CTAGE1Q96RT6 745 aa10.98□□□□□ -0.65
HOXA1-201ENST00000343060 RHOXF2Q9BQY4 288 aa10.98□□□□□ -0.65
HOXA1-201ENST00000343060 SERTAD1Q9UHV2 236 aa10.98□□□□□ -0.65
HOXA1-201ENST00000343060 WWC3Q9ULE0 1092 aa10.98□□□□□ -0.65
HOXA1-201ENST00000343060 ZNF213O14771 459 aa10.98□□□□□ -0.65
HOXA1-201ENST00000343060 GYPCP04921 128 aa10.98□□□□□ -0.65
HOXA1-201ENST00000343060 KCNA6P17658 529 aa10.98□□□□□ -0.65
HOXA1-201ENST00000343060 TOB1P50616 345 aaPredicted RBP10.98□□□□□ -0.65
HOXA1-201ENST00000343060 EIF5P55010 431 aaKnown RBP10.98□□□□□ -0.65
HOXA1-201ENST00000343060 TRDNQ13061 729 aa10.98□□□□□ -0.65
HOXA1-201ENST00000343060 SWT1Q5T5J6 900 aaKnown RBP10.98□□□□□ -0.65
HOXA1-201ENST00000343060 CERS3Q8IU89 383 aa10.98□□□□□ -0.65
HOXA1-201ENST00000343060 TMTC1Q8IUR5 882 aa10.98□□□□□ -0.65
HOXA1-201ENST00000343060 ZNF496Q96IT1 587 aaPredicted RBP10.98□□□□□ -0.65
HOXA1-201ENST00000343060 NCAPGQ9BPX3 1015 aa10.98□□□□□ -0.65
HOXA1-201ENST00000343060 FAM107BQ9H098 131 aa10.98□□□□□ -0.65
HOXA1-201ENST00000343060 FAM217BQ9NTX9 383 aaPredicted RBP10.98□□□□□ -0.65
HOXA1-201ENST00000343060 CCDC9Q9Y3X0 531 aaKnown RBP10.98□□□□□ -0.65
HOXA1-201ENST00000343060 A0A087WUV0 522 aaPredicted RBP10.97□□□□□ -0.65
HOXA1-201ENST00000343060 SNRPA1P09661 255 aaKnown RBP10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms