RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 NUCB2P80303 420 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 DALRD3Q5D0E6 543 aaKnown RBP4.87□□□□□ -1.63
MCF2-201ENST00000338585 TMEM67Q5HYA8 995 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 STRIP1Q5VSL9 837 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 USP17L1Q7RTZ2 530 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 TEX11Q8IYF3 940 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 RTKN2Q8IZC4 609 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 FBXL16Q8N461 479 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 SUPT20HQ8NEM7 779 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 NLGN2Q8NFZ4 835 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 DDX11Q96FC9 970 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 DYNLL2Q96FJ2 89 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 PSMD1Q99460 953 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 MYL10Q9BUA6 226 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 KRT23Q9C075 422 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 CNNM2Q9H8M5 875 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 LY9Q9HBG7 655 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 ANGEL1Q9UNK9 670 aaKnown RBP4.87□□□□□ -1.63
MCF2-201ENST00000338585 CDK5RAP2Q96SN8 1893 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 WDR19Q8NEZ3 1342 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 BRCA1P38398 1863 aaKnown RBP4.87□□□□□ -1.63
MCF2-201ENST00000338585 IFIT3O14879 490 aaKnown RBP4.87□□□□□ -1.63
MCF2-201ENST00000338585 IGSF3O75054 1194 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 RAD17O75943 681 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 PLCD1P51178 756 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 EVCP57679 992 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 PICALMQ13492 652 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 FOXD4L6Q3SYB3 417 aaPredicted RBP4.87□□□□□ -1.63
MCF2-201ENST00000338585 SBK1Q52WX2 424 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 C12orf60Q5U649 245 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 FOXD4L3Q6VB84 417 aaPredicted RBP4.87□□□□□ -1.63
MCF2-201ENST00000338585 CCDC144CPQ8IYA2 1237 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 LARGE2Q8N3Y3 721 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 SLC44A5Q8NCS7 719 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 ZNF274Q96GC6 653 aaPredicted RBP4.87□□□□□ -1.63
MCF2-201ENST00000338585 RNF41Q9H4P4 317 aaPredicted RBP4.87□□□□□ -1.63
MCF2-201ENST00000338585 DDX4Q9NQI0 724 aaKnown RBP4.87□□□□□ -1.63
MCF2-201ENST00000338585 ARPP21Q9UBL0 812 aaPredicted RBP4.87□□□□□ -1.63
MCF2-201ENST00000338585 DDX52Q9Y2R4 599 aaKnown RBP eCLIP4.87□□□□□ -1.63
MCF2-201ENST00000338585 SUGT1Q9Y2Z0 365 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 LAMB1P07942 1786 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 FLT1P17948 1338 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 NAV1Q8NEY1 1877 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 PTPDC1A2A3K4 754 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 TULP1O00294 542 aaPredicted RBP4.87□□□□□ -1.63
MCF2-201ENST00000338585 RANBP6O60518 1105 aaKnown RBP4.87□□□□□ -1.63
MCF2-201ENST00000338585 NMT2O60551 498 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 FGRP09769 529 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 CRKP46108 304 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 FOSBP53539 338 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 CACNB3P54284 484 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 FAM47AQ5JRC9 791 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 APOBEC3HQ6NTF7 200 aaKnown RBP4.87□□□□□ -1.63
MCF2-201ENST00000338585 CDC42EP5Q6NZY7 148 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 APOA5Q6Q788 366 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 NFXL1Q6ZNB6 911 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 SLF2Q8IX21 1173 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 NSUN7Q8NE18 718 aaKnown RBP4.87□□□□□ -1.63
MCF2-201ENST00000338585 ESR2Q92731 530 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 TEKT1Q969V4 418 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 TMEM87BQ96K49 555 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 USP40Q9NVE5 1235 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 BCS1LQ9Y276 419 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 CD2APQ9Y5K6 639 aa4.87□□□□□ -1.63
MCF2-201ENST00000338585 DDX60LQ5H9U9 1706 aaKnown RBP4.86□□□□□ -1.63
MCF2-201ENST00000338585 NFKBIEO00221 500 aa4.86□□□□□ -1.63
MCF2-201ENST00000338585 STX6O43752 255 aa4.86□□□□□ -1.63
MCF2-201ENST00000338585 WDHD1O75717 1129 aaPredicted RBP4.86□□□□□ -1.63
MCF2-201ENST00000338585 BAG4O95429 457 aaKnown RBP4.86□□□□□ -1.63
MCF2-201ENST00000338585 POLR3DP05423 398 aaPredicted RBP4.86□□□□□ -1.63
MCF2-201ENST00000338585 RBM5P52756 815 aaKnown RBP eCLIP4.86□□□□□ -1.63
MCF2-201ENST00000338585 NFIAQ12857 509 aa4.86□□□□□ -1.63
MCF2-201ENST00000338585 SEC23AQ15436 765 aa4.86□□□□□ -1.63
MCF2-201ENST00000338585 MICU3Q86XE3 530 aa4.86□□□□□ -1.63
MCF2-201ENST00000338585 SMARCC2Q8TAQ2 1214 aa4.86□□□□□ -1.63
MCF2-201ENST00000338585 MTMR6Q9Y217 621 aa4.86□□□□□ -1.63
MCF2-201ENST00000338585 TNKSO95271 1327 aa4.86□□□□□ -1.63
MCF2-201ENST00000338585 VPS37CA5D8V6 355 aaPredicted RBP4.86□□□□□ -1.63
MCF2-201ENST00000338585 PSMD14O00487 310 aa4.86□□□□□ -1.63
MCF2-201ENST00000338585 ORC4O43929 436 aa4.86□□□□□ -1.63
MCF2-201ENST00000338585 SLURP2P0DP57 97 aa4.86□□□□□ -1.63
MCF2-201ENST00000338585 PLCG2P16885 1265 aa4.86□□□□□ -1.63
MCF2-201ENST00000338585 CDC27P30260 824 aa4.86□□□□□ -1.63
MCF2-201ENST00000338585 ADD1P35611 737 aaKnown RBP4.86□□□□□ -1.63
MCF2-201ENST00000338585 IARSP41252 1262 aaKnown RBP4.86□□□□□ -1.63
MCF2-201ENST00000338585 PRELPP51888 382 aa4.86□□□□□ -1.63
MCF2-201ENST00000338585 FKBP1AP62942 108 aaKnown RBP4.86□□□□□ -1.63
MCF2-201ENST00000338585 RASSF7Q02833 373 aa4.86□□□□□ -1.63
MCF2-201ENST00000338585 WTAPQ15007 396 aa4.86□□□□□ -1.63
MCF2-201ENST00000338585 GRIPAP1Q4V328 841 aa4.86□□□□□ -1.63
MCF2-201ENST00000338585 LARP1BQ659C4 914 aaKnown RBP4.86□□□□□ -1.63
MCF2-201ENST00000338585 HHIPL2Q6UWX4 724 aa4.86□□□□□ -1.63
MCF2-201ENST00000338585 ILDR2Q71H61 639 aa4.86□□□□□ -1.63
MCF2-201ENST00000338585 CDC37L1Q7L3B6 337 aa4.86□□□□□ -1.63
MCF2-201ENST00000338585 SGMS1Q86VZ5 419 aa4.86□□□□□ -1.63
MCF2-201ENST00000338585 ZFPM1Q8IX07 1006 aa4.86□□□□□ -1.63
MCF2-201ENST00000338585 ENAHQ8N8S7 591 aaPredicted RBP4.86□□□□□ -1.63
MCF2-201ENST00000338585 ZDHHC15Q96MV8 337 aa4.86□□□□□ -1.63
MCF2-201ENST00000338585 ZSCAN10Q96SZ4 725 aaPredicted RBP4.86□□□□□ -1.63
MCF2-201ENST00000338585 UBAC1Q9BSL1 405 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms