RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 SMC5Q8IY18 1101 aa19.16■□□□□ 0.66
CLN3-201ENST00000333496 DHX36Q9H2U1 1008 aaKnown RBP19.16■□□□□ 0.66
CLN3-201ENST00000333496 R3HDMLQ9H3Y0 253 aa19.16■□□□□ 0.66
CLN3-201ENST00000333496 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19.16■□□□□ 0.66
CLN3-201ENST00000333496 PI4KBQ9UBF8 816 aa19.16■□□□□ 0.66
CLN3-201ENST00000333496 SCYL3Q8IZE3 742 aa19.15■□□□□ 0.66
CLN3-201ENST00000333496 BRI3BPQ8WY22 251 aa19.15■□□□□ 0.66
CLN3-201ENST00000333496 RWDD1Q9H446 243 aaPredicted RBP19.15■□□□□ 0.66
CLN3-201ENST00000333496 SAP30BPQ9UHR5 308 aaKnown RBP19.15■□□□□ 0.66
CLN3-201ENST00000333496 USP5P45974 858 aa19.14■□□□□ 0.66
CLN3-201ENST00000333496 GTF2A2P52657 109 aa19.14■□□□□ 0.66
CLN3-201ENST00000333496 RRP1BQ14684 758 aaKnown RBP19.14■□□□□ 0.66
CLN3-201ENST00000333496 METTL16Q86W50 562 aaKnown RBP19.14■□□□□ 0.66
CLN3-201ENST00000333496 LCORLQ8N3X6 602 aa19.14■□□□□ 0.66
CLN3-201ENST00000333496 CFHR5Q9BXR6 569 aa19.14■□□□□ 0.66
CLN3-201ENST00000333496 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.14■□□□□ 0.662e-6■■■■■ 40.7
CLN3-201ENST00000333496 DNAJC18Q9H819 358 aa19.14■□□□□ 0.66
CLN3-201ENST00000333496 CCL15-CCL14A0A0B4J2E2 113 aa19.14■□□□□ 0.65
CLN3-201ENST00000333496 CTNND1O60716 968 aaKnown RBP19.14■□□□□ 0.65
CLN3-201ENST00000333496 MX1P20591 662 aa19.14■□□□□ 0.65
CLN3-201ENST00000333496 UBE3CQ15386 1083 aa19.14■□□□□ 0.65
CLN3-201ENST00000333496 CCL15Q16663 113 aa19.14■□□□□ 0.65
CLN3-201ENST00000333496 SLC4A8Q2Y0W8 1093 aa19.14■□□□□ 0.65
CLN3-201ENST00000333496 KBTBD3Q8NAB2 608 aa19.14■□□□□ 0.65
CLN3-201ENST00000333496 FRMD4AQ9P2Q2 1039 aaPredicted RBP19.14■□□□□ 0.65
CLN3-201ENST00000333496 HERC5Q9UII4 1024 aaKnown RBP19.14■□□□□ 0.65
CLN3-201ENST00000333496 ALDH1A1P00352 501 aa19.13■□□□□ 0.65
CLN3-201ENST00000333496 PTPRAP18433 802 aa19.13■□□□□ 0.65
CLN3-201ENST00000333496 ARMT1Q9H993 441 aa19.13■□□□□ 0.65
CLN3-201ENST00000333496 KCNH4Q9UQ05 1017 aa19.13■□□□□ 0.65
CLN3-201ENST00000333496 GLRX3O76003 335 aaKnown RBP19.12■□□□□ 0.65
CLN3-201ENST00000333496 FOXP4Q8IVH2 680 aaPredicted RBP19.12■□□□□ 0.65
CLN3-201ENST00000333496 TNS4Q8IZW8 715 aa19.12■□□□□ 0.65
CLN3-201ENST00000333496 SDR42E1Q8WUS8 393 aa19.12■□□□□ 0.65
CLN3-201ENST00000333496 ERC2O15083 957 aa19.11■□□□□ 0.65
CLN3-201ENST00000333496 SNAPC2Q13487 334 aa19.11■□□□□ 0.65
CLN3-201ENST00000333496 B4GALNT3Q6L9W6 998 aa19.11■□□□□ 0.65
CLN3-201ENST00000333496 FAM43AQ8N2R8 423 aa19.11■□□□□ 0.65
CLN3-201ENST00000333496 CRNKL1Q9BZJ0 848 aaKnown RBP19.11■□□□□ 0.65
CLN3-201ENST00000333496 LNPKQ9C0E8 428 aa19.11■□□□□ 0.65
CLN3-201ENST00000333496 PUS7LQ9H0K6 701 aaKnown RBP19.11■□□□□ 0.65
CLN3-201ENST00000333496 ZBTB47Q9UFB7 747 aaPredicted RBP19.11■□□□□ 0.65
CLN3-201ENST00000333496 MBD4O95243 580 aa19.11■□□□□ 0.65
CLN3-201ENST00000333496 CETPP11597 493 aa19.11■□□□□ 0.65
CLN3-201ENST00000333496 CAP2P40123 477 aa19.11■□□□□ 0.65
CLN3-201ENST00000333496 MOGSQ13724 837 aa19.11■□□□□ 0.65
CLN3-201ENST00000333496 ZSCAN25Q6NSZ9 544 aa19.11■□□□□ 0.65
CLN3-201ENST00000333496 CCDC84Q86UT8 332 aaPredicted RBP19.11■□□□□ 0.65
CLN3-201ENST00000333496 PICK1Q9NRD5 415 aa19.11■□□□□ 0.65
CLN3-201ENST00000333496 STAP2Q9UGK3 403 aa19.11■□□□□ 0.65
CLN3-201ENST00000333496 AFG3L2Q9Y4W6 797 aa19.11■□□□□ 0.65
CLN3-201ENST00000333496 ZHX2Q9Y6X8 837 aa19.11■□□□□ 0.65
CLN3-201ENST00000333496 MYH8P13535 1937 aa19.1■□□□□ 0.65
CLN3-201ENST00000333496 GPR25O00155 361 aa19.1■□□□□ 0.65
CLN3-201ENST00000333496 PRKAB2O43741 272 aa19.1■□□□□ 0.65
CLN3-201ENST00000333496 PDE1AP54750 535 aa19.1■□□□□ 0.65
CLN3-201ENST00000333496 JAG1P78504 1218 aa19.1■□□□□ 0.65
CLN3-201ENST00000333496 NOM1Q5C9Z4 860 aaKnown RBP19.1■□□□□ 0.65
CLN3-201ENST00000333496 OTUD7BQ6GQQ9 843 aa19.1■□□□□ 0.65
CLN3-201ENST00000333496 DCP1AQ9NPI6 582 aaPredicted RBP19.1■□□□□ 0.65
CLN3-201ENST00000333496 BTBD19C9JJ37 291 aa19.09■□□□□ 0.65
CLN3-201ENST00000333496 HLA-DOAP06340 250 aa19.09■□□□□ 0.65
CLN3-201ENST00000333496 PLCD1P51178 756 aa19.09■□□□□ 0.65
CLN3-201ENST00000333496 EVX2Q03828 476 aa19.09■□□□□ 0.65
CLN3-201ENST00000333496 CRHR2Q13324 411 aa19.09■□□□□ 0.65
CLN3-201ENST00000333496 CRACR2BQ8N4Y2 399 aaPredicted RBP19.09■□□□□ 0.65
CLN3-201ENST00000333496 ZNF296Q8WUU4 475 aaPredicted RBP19.09■□□□□ 0.65
CLN3-201ENST00000333496 CXCL11O14625 94 aa19.08■□□□□ 0.65
CLN3-201ENST00000333496 SHROOM1Q2M3G4 852 aaPredicted RBP19.08■□□□□ 0.65
CLN3-201ENST00000333496 OSBP2Q969R2 916 aa19.08■□□□□ 0.65
CLN3-201ENST00000333496 EHD4Q9H223 541 aa19.08■□□□□ 0.65
CLN3-201ENST00000333496 RNF113AO15541 343 aaKnown RBP19.07■□□□□ 0.64
CLN3-201ENST00000333496 NUCB1Q02818 461 aa19.07■□□□□ 0.64
CLN3-201ENST00000333496 TTC6Q86TZ1 520 aa19.07■□□□□ 0.64
CLN3-201ENST00000333496 CHD1LQ86WJ1 897 aa19.07■□□□□ 0.64
CLN3-201ENST00000333496 MCM9Q9NXL9 1143 aa19.07■□□□□ 0.64
CLN3-201ENST00000333496 SERPINB13Q9UIV8 391 aa19.07■□□□□ 0.64
CLN3-201ENST00000333496 A0A0G2JLL6 359 aaPredicted RBP19.07■□□□□ 0.64
CLN3-201ENST00000333496 PRRT2Q7Z6L0 340 aaPredicted RBP19.07■□□□□ 0.64
CLN3-201ENST00000333496 APPBP2Q92624 585 aa19.07■□□□□ 0.64
CLN3-201ENST00000333496 LOC285556D6RIA3 1793 aa19.06■□□□□ 0.64
CLN3-201ENST00000333496 POLR3DP05423 398 aaPredicted RBP19.06■□□□□ 0.64
CLN3-201ENST00000333496 GABPAQ06546 454 aa19.06■□□□□ 0.64
CLN3-201ENST00000333496 TAF1CQ15572 869 aaPredicted RBP19.06■□□□□ 0.64
CLN3-201ENST00000333496 TATDN1Q6P1N9 297 aa19.06■□□□□ 0.64
CLN3-201ENST00000333496 STRBPQ96SI9 672 aaKnown RBP19.06■□□□□ 0.64
CLN3-201ENST00000333496 TRIM34Q9BYJ4 488 aa19.06■□□□□ 0.64
CLN3-201ENST00000333496 ZCCHC17Q9NP64 241 aaKnown RBP19.06■□□□□ 0.64
CLN3-201ENST00000333496 ATP8A2Q9NTI2 1148 aa19.06■□□□□ 0.64
CLN3-201ENST00000333496 GDF11O95390 407 aa19.05■□□□□ 0.64
CLN3-201ENST00000333496 ZFYP08048 801 aaPredicted RBP19.05■□□□□ 0.64
CLN3-201ENST00000333496 CYP2D6P10635 497 aa19.05■□□□□ 0.64
CLN3-201ENST00000333496 TRIM75PA6NK02 468 aa19.04■□□□□ 0.64
CLN3-201ENST00000333496 SMIM22K7EJ46 135 aa19.04■□□□□ 0.64
CLN3-201ENST00000333496 FKTNO75072 461 aa19.04■□□□□ 0.64
CLN3-201ENST00000333496 ASNSP08243 561 aa19.04■□□□□ 0.64
CLN3-201ENST00000333496 GPAT2Q6NUI2 795 aa19.04■□□□□ 0.64
CLN3-201ENST00000333496 ANKRD23Q86SG2 305 aa19.04■□□□□ 0.64
CLN3-201ENST00000333496 SLC4A4Q9Y6R1 1079 aa19.04■□□□□ 0.64
CLN3-201ENST00000333496 USP17L5A8MUK1 530 aa19.03■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms