RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 NBPF11Q86T75 865 aa17.2■□□□□ 0.34
CLCNKA-201ENST00000331433 TRIM22Q8IYM9 498 aa17.2■□□□□ 0.34
CLCNKA-201ENST00000331433 AOPEPQ8N6M6 819 aa17.2■□□□□ 0.34
CLCNKA-201ENST00000331433 SPTLC3Q9NUV7 552 aa17.2■□□□□ 0.34
CLCNKA-201ENST00000331433 ANAPC4Q9UJX5 808 aa17.2■□□□□ 0.34
CLCNKA-201ENST00000331433 BIN1O00499 593 aa17.19■□□□□ 0.34
CLCNKA-201ENST00000331433 DPCR1Q3MIW9 517 aa17.19■□□□□ 0.34
CLCNKA-201ENST00000331433 ARHGAP30Q7Z6I6 1101 aaPredicted RBP17.19■□□□□ 0.34
CLCNKA-201ENST00000331433 FANCBQ8NB91 859 aa17.19■□□□□ 0.34
CLCNKA-201ENST00000331433 ESR2Q92731 530 aa17.19■□□□□ 0.34
CLCNKA-201ENST00000331433 CLIC6Q96NY7 704 aa17.19■□□□□ 0.34
CLCNKA-201ENST00000331433 JAG2Q9Y219 1238 aa17.19■□□□□ 0.34
CLCNKA-201ENST00000331433 EVX2Q03828 476 aa17.19■□□□□ 0.34
CLCNKA-201ENST00000331433 CHAF1AQ13111 956 aaPredicted RBP17.19■□□□□ 0.34
CLCNKA-201ENST00000331433 SEC23AQ15436 765 aa17.19■□□□□ 0.34
CLCNKA-201ENST00000331433 SHC4Q6S5L8 630 aa17.19■□□□□ 0.34
CLCNKA-201ENST00000331433 SLC51AQ86UW1 340 aa17.19■□□□□ 0.34
CLCNKA-201ENST00000331433 TMTC2Q8N394 836 aa17.19■□□□□ 0.34
CLCNKA-201ENST00000331433 CRACR2BQ8N4Y2 399 aaPredicted RBP17.19■□□□□ 0.34
CLCNKA-201ENST00000331433 WASF1Q92558 559 aa17.19■□□□□ 0.34
CLCNKA-201ENST00000331433 ARHGEF1Q92888 912 aaKnown RBP17.19■□□□□ 0.34
CLCNKA-201ENST00000331433 UQCRHLA0A096LP55 91 aa17.18■□□□□ 0.34
CLCNKA-201ENST00000331433 MMP1P03956 469 aa17.18■□□□□ 0.34
CLCNKA-201ENST00000331433 UQCRHP07919 91 aa17.18■□□□□ 0.34
CLCNKA-201ENST00000331433 SLC3A2P08195 630 aaKnown RBP17.18■□□□□ 0.34
CLCNKA-201ENST00000331433 SARM1Q6SZW1 724 aa17.18■□□□□ 0.34
CLCNKA-201ENST00000331433 NOSTRINQ8IVI9 506 aa17.18■□□□□ 0.34
CLCNKA-201ENST00000331433 DIS3L2Q8IYB7 885 aaKnown RBP17.18■□□□□ 0.34
CLCNKA-201ENST00000331433 NSUN4Q96CB9 384 aaKnown RBP17.18■□□□□ 0.34
CLCNKA-201ENST00000331433 RTCBQ9Y3I0 505 aaKnown RBP17.18■□□□□ 0.34
CLCNKA-201ENST00000331433 RGL2O15211 777 aa17.18■□□□□ 0.34
CLCNKA-201ENST00000331433 PPP6R2O75170 966 aa17.18■□□□□ 0.34
CLCNKA-201ENST00000331433 HIBADHP31937 336 aaKnown RBP17.18■□□□□ 0.34
CLCNKA-201ENST00000331433 MECOMQ03112 1051 aa17.18■□□□□ 0.34
CLCNKA-201ENST00000331433 CCDC144BQ3MJ40 725 aa17.18■□□□□ 0.34
CLCNKA-201ENST00000331433 TPTE2Q6XPS3 522 aa17.18■□□□□ 0.34
CLCNKA-201ENST00000331433 TXNRD3Q86VQ6 643 aa17.18■□□□□ 0.34
CLCNKA-201ENST00000331433 FNBP4Q8N3X1 1017 aaPredicted RBP17.18■□□□□ 0.34
CLCNKA-201ENST00000331433 ENAHQ8N8S7 591 aaPredicted RBP17.18■□□□□ 0.34
CLCNKA-201ENST00000331433 MTA3Q9BTC8 594 aa17.18■□□□□ 0.34
CLCNKA-201ENST00000331433 USP21Q9UK80 565 aa17.18■□□□□ 0.34
CLCNKA-201ENST00000331433 PRDX5P30044 214 aa17.17■□□□□ 0.34
CLCNKA-201ENST00000331433 SYKP43405 635 aa17.17■□□□□ 0.34
CLCNKA-201ENST00000331433 ZRSR1Q15695 479 aaKnown RBP17.17■□□□□ 0.34
CLCNKA-201ENST00000331433 JMYQ8N9B5 988 aa17.17■□□□□ 0.34
CLCNKA-201ENST00000331433 BRIP1Q9BX63 1249 aa17.17■□□□□ 0.34
CLCNKA-201ENST00000331433 NAT10Q9H0A0 1025 aaKnown RBP17.17■□□□□ 0.34
CLCNKA-201ENST00000331433 AATFQ9NY61 560 aaKnown RBP eCLIP17.17■□□□□ 0.34
CLCNKA-201ENST00000331433 CCDC196A0A1B0GTZ2 297 aa17.16■□□□□ 0.34
CLCNKA-201ENST00000331433 NPHP1O15259 732 aa17.16■□□□□ 0.34
CLCNKA-201ENST00000331433 DEXIO95424 95 aa17.16■□□□□ 0.34
CLCNKA-201ENST00000331433 COL24A1Q17RW2 1714 aa17.16■□□□□ 0.34
CLCNKA-201ENST00000331433 CTR9Q6PD62 1173 aa17.16■□□□□ 0.34
CLCNKA-201ENST00000331433 HPSEQ9Y251 543 aa17.16■□□□□ 0.34
CLCNKA-201ENST00000331433 MYH13Q9UKX3 1938 aa17.16■□□□□ 0.34
CLCNKA-201ENST00000331433 DUOX1Q9NRD9 1551 aa17.16■□□□□ 0.34
CLCNKA-201ENST00000331433 USP17L12C9JPN9 530 aa17.16■□□□□ 0.34
CLCNKA-201ENST00000331433 USP17L21D6R901 530 aa17.16■□□□□ 0.34
CLCNKA-201ENST00000331433 NR5A1Q13285 461 aa17.16■□□□□ 0.34
CLCNKA-201ENST00000331433 SAFBQ15424 915 aaKnown RBP eCLIP17.16■□□□□ 0.34
CLCNKA-201ENST00000331433 ZSCAN10Q96SZ4 725 aaPredicted RBP17.16■□□□□ 0.34
CLCNKA-201ENST00000331433 SEMA3EO15041 775 aa17.15■□□□□ 0.34
CLCNKA-201ENST00000331433 TM4SF1P30408 202 aa17.15■□□□□ 0.34
CLCNKA-201ENST00000331433 TOB1P50616 345 aaPredicted RBP17.15■□□□□ 0.34
CLCNKA-201ENST00000331433 ISM2Q6H9L7 571 aa17.15■□□□□ 0.34
CLCNKA-201ENST00000331433 ANKRD2Q9GZV1 360 aa17.15■□□□□ 0.34
CLCNKA-201ENST00000331433 EP400Q96L91 3159 aa17.15■□□□□ 0.34
CLCNKA-201ENST00000331433 CDC25BP30305 580 aa17.15■□□□□ 0.34
CLCNKA-201ENST00000331433 MRFAP1L1Q96HT8 127 aa17.15■□□□□ 0.34
CLCNKA-201ENST00000331433 hCG_1642624A0A1W2PR95 340 aa17.14■□□□□ 0.34
CLCNKA-201ENST00000331433 RCAN1P53805 252 aa17.14■□□□□ 0.34
CLCNKA-201ENST00000331433 SPECC1Q5M775 1068 aa17.14■□□□□ 0.34
CLCNKA-201ENST00000331433 RESP18Q5W5W9 173 aa17.14■□□□□ 0.34
CLCNKA-201ENST00000331433 OXER1Q8TDS5 423 aa17.14■□□□□ 0.34
CLCNKA-201ENST00000331433 CACTINQ8WUQ7 758 aaKnown RBP17.14■□□□□ 0.34
CLCNKA-201ENST00000331433 EIF4ENIF1Q9NRA8 985 aaKnown RBP17.14■□□□□ 0.34
CLCNKA-201ENST00000331433 IFIT1BQ5T764 474 aaKnown RBP17.14■□□□□ 0.33
CLCNKA-201ENST00000331433 MYH6P13533 1939 aa17.14■□□□□ 0.33
CLCNKA-201ENST00000331433 NLRP12P59046 1061 aa17.13■□□□□ 0.33
CLCNKA-201ENST00000331433 SHISA4Q96DD7 197 aa17.13■□□□□ 0.33
CLCNKA-201ENST00000331433 FOXP1Q9H334 677 aaPredicted RBP17.13■□□□□ 0.33
CLCNKA-201ENST00000331433 DCP1AQ9NPI6 582 aaPredicted RBP17.13■□□□□ 0.33
CLCNKA-201ENST00000331433 NHSQ6T4R5 1651 aa17.13■□□□□ 0.33
CLCNKA-201ENST00000331433 CUTAO60888 179 aa17.13■□□□□ 0.33
CLCNKA-201ENST00000331433 ATP2B1P20020 1258 aa17.13■□□□□ 0.33
CLCNKA-201ENST00000331433 GRIN1Q05586 938 aa17.13■□□□□ 0.33
CLCNKA-201ENST00000331433 PNOCQ13519 176 aa17.13■□□□□ 0.33
CLCNKA-201ENST00000331433 ARID5BQ14865 1188 aa17.13■□□□□ 0.33
CLCNKA-201ENST00000331433 TIGD1Q96MW7 591 aa17.13■□□□□ 0.33
CLCNKA-201ENST00000331433 TNRC6CQ9HCJ0 1690 aaKnown RBP17.13■□□□□ 0.33
CLCNKA-201ENST00000331433 NMT2O60551 498 aa17.12■□□□□ 0.33
CLCNKA-201ENST00000331433 PLEKHA8P1O95397 391 aa17.12■□□□□ 0.33
CLCNKA-201ENST00000331433 CYP2D6P10635 497 aa17.12■□□□□ 0.33
CLCNKA-201ENST00000331433 RFC4P35249 363 aa17.12■□□□□ 0.33
CLCNKA-201ENST00000331433 RBM6P78332 1123 aaKnown RBP17.12■□□□□ 0.33
CLCNKA-201ENST00000331433 SLC4A8Q2Y0W8 1093 aa17.12■□□□□ 0.33
CLCNKA-201ENST00000331433 IQCA1Q86XH1 822 aa17.12■□□□□ 0.33
CLCNKA-201ENST00000331433 KRI1Q8N9T8 703 aaKnown RBP17.12■□□□□ 0.33
CLCNKA-201ENST00000331433 FGRP09769 529 aa17.12■□□□□ 0.33
CLCNKA-201ENST00000331433 LONRF3Q496Y0 759 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms