RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 COPS6Q7L5N1 327 aa8.79□□□□□ -1
CIITA-201ENST00000324288 NCAPD3P42695 1498 aa8.79□□□□□ -1
CIITA-201ENST00000324288 GOLGA8FQ08AF8 430 aa8.79□□□□□ -1
CIITA-201ENST00000324288 GOLGA8DPQ0D2H9 430 aa8.79□□□□□ -1
CIITA-201ENST00000324288 CUL4BQ13620 913 aa8.79□□□□□ -1
CIITA-201ENST00000324288 RILPQ96NA2 401 aa8.79□□□□□ -1
CIITA-201ENST00000324288 ZNF408Q9H9D4 720 aa8.79□□□□□ -1
CIITA-201ENST00000324288 PPP1R12AO14974 1030 aaPredicted RBP8.79□□□□□ -1
CIITA-201ENST00000324288 KRT28Q7Z3Y7 464 aa8.79□□□□□ -1
CIITA-201ENST00000324288 SCYL1Q96KG9 808 aa8.79□□□□□ -1
CIITA-201ENST00000324288 SYNJ1O43426 1573 aa8.79□□□□□ -1
CIITA-201ENST00000324288 HS2ST1Q7LGA3 356 aa8.78□□□□□ -1
CIITA-201ENST00000324288 TIAM1Q13009 1591 aa8.78□□□□□ -1
CIITA-201ENST00000324288 POGZQ7Z3K3 1410 aa8.78□□□□□ -1
CIITA-201ENST00000324288 LETM2Q2VYF4 491 aa8.78□□□□□ -1
CIITA-201ENST00000324288 TRMT44Q8IYL2 757 aaKnown RBP8.78□□□□□ -1
CIITA-201ENST00000324288 KIAA1524Q8TCG1 905 aa8.78□□□□□ -1
CIITA-201ENST00000324288 GJA3Q9Y6H8 435 aa8.78□□□□□ -1
CIITA-201ENST00000324288 DAPK3O43293 454 aa8.78□□□□□ -1
CIITA-201ENST00000324288 PDE1AP54750 535 aa8.78□□□□□ -1
CIITA-201ENST00000324288 IFT88Q13099 833 aa8.78□□□□□ -1
CIITA-201ENST00000324288 FAM173BQ6P4H8 233 aa8.78□□□□□ -1
CIITA-201ENST00000324288 CAPN12Q6ZSI9 719 aa8.78□□□□□ -1
CIITA-201ENST00000324288 SMC5Q8IY18 1101 aa8.78□□□□□ -1
CIITA-201ENST00000324288 CCNT1O60563 726 aaKnown RBP8.78□□□□□ -1
CIITA-201ENST00000324288 UQCRFS1P1P0C7P4 283 aa8.78□□□□□ -1
CIITA-201ENST00000324288 EPB41P11171 864 aaKnown RBP8.78□□□□□ -1
CIITA-201ENST00000324288 TAB3Q8N5C8 712 aaPredicted RBP8.78□□□□□ -1
CIITA-201ENST00000324288 KNL1Q8NG31 2342 aa8.78□□□□□ -1
CIITA-201ENST00000324288 WASLO00401 505 aaPredicted RBP8.78□□□□□ -1
CIITA-201ENST00000324288 TUBB4AP04350 444 aa8.78□□□□□ -1
CIITA-201ENST00000324288 WDR44Q5JSH3 913 aa8.78□□□□□ -1
CIITA-201ENST00000324288 RGS16O15492 202 aaPredicted RBP8.78□□□□□ -1
CIITA-201ENST00000324288 AFG3L2Q9Y4W6 797 aa8.78□□□□□ -1
CIITA-201ENST00000324288 SYNRGQ9UMZ2 1314 aa8.78□□□□□ -1
CIITA-201ENST00000324288 TFCP2Q12800 502 aa8.78□□□□□ -1
CIITA-201ENST00000324288 CYP26C1Q6V0L0 522 aa8.78□□□□□ -1
CIITA-201ENST00000324288 MSANTD4Q8NCY6 345 aa8.78□□□□□ -1
CIITA-201ENST00000324288 LMBR1LQ6UX01 489 aa8.78□□□□□ -1
CIITA-201ENST00000324288 PTPDC1A2A3K4 754 aa8.78□□□□□ -1
CIITA-201ENST00000324288 IFNL2Q8IZJ0 200 aa8.78□□□□□ -1
CIITA-201ENST00000324288 ARID1BQ8NFD5 2236 aaPredicted RBP8.77□□□□□ -1
CIITA-201ENST00000324288 PARP1P09874 1014 aaKnown RBP8.77□□□□□ -1
CIITA-201ENST00000324288 GPR161Q8N6U8 529 aaKnown RBP8.77□□□□□ -1
CIITA-201ENST00000324288 CFAP61Q8NHU2 1237 aa8.77□□□□□ -1
CIITA-201ENST00000324288 MYCLP12524 364 aaPredicted RBP8.77□□□□□ -1
CIITA-201ENST00000324288 CABS1Q96KC9 395 aa8.77□□□□□ -1
CIITA-201ENST00000324288 RASIP1Q5U651 963 aa8.77□□□□□ -1.01
CIITA-201ENST00000324288 NOC4LQ9BVI4 516 aaKnown RBP8.77□□□□□ -1.01
CIITA-201ENST00000324288 hCG_1642624A0A1W2PR95 340 aa8.77□□□□□ -1.01
CIITA-201ENST00000324288 TBC1D8O95759 1140 aa8.77□□□□□ -1.01
CIITA-201ENST00000324288 ARHGAP24Q8N264 748 aa8.77□□□□□ -1.01
CIITA-201ENST00000324288 LSM14BQ9BX40 385 aaKnown RBP8.77□□□□□ -1.01
CIITA-201ENST00000324288 USP26Q9BXU7 913 aa8.77□□□□□ -1.01
CIITA-201ENST00000324288 PDE11AQ9HCR9 933 aa8.77□□□□□ -1.01
CIITA-201ENST00000324288 MRFAP1Q9Y605 127 aa8.77□□□□□ -1.01
CIITA-201ENST00000324288 RAB3IPQ96QF0 476 aaPredicted RBP8.77□□□□□ -1.01
CIITA-201ENST00000324288 NCOA5Q9HCD5 579 aaKnown RBP8.77□□□□□ -1.01
CIITA-201ENST00000324288 DTHD1Q6ZMT9 781 aa8.77□□□□□ -1.01
CIITA-201ENST00000324288 NACA2Q9H009 215 aa8.77□□□□□ -1.01
CIITA-201ENST00000324288 STX10O60499 249 aa8.77□□□□□ -1.01
CIITA-201ENST00000324288 MX2P20592 715 aa8.77□□□□□ -1.01
CIITA-201ENST00000324288 RASEFQ8IZ41 740 aa8.77□□□□□ -1.01
CIITA-201ENST00000324288 MYO1AQ9UBC5 1043 aa8.77□□□□□ -1.01
CIITA-201ENST00000324288 BMP15O95972 392 aa8.77□□□□□ -1.01
CIITA-201ENST00000324288 MYL5Q02045 173 aa8.77□□□□□ -1.01
CIITA-201ENST00000324288 POLR2DO15514 142 aaKnown RBP8.77□□□□□ -1.01
CIITA-201ENST00000324288 MGEA5O60502 916 aa8.77□□□□□ -1.01
CIITA-201ENST00000324288 LRMPQ12912 555 aa8.77□□□□□ -1.01
CIITA-201ENST00000324288 TBC1D8BQ0IIM8 1120 aa8.76□□□□□ -1.01
CIITA-201ENST00000324288 NXNQ6DKJ4 435 aa8.76□□□□□ -1.01
CIITA-201ENST00000324288 OTUD7AQ8TE49 926 aaPredicted RBP8.76□□□□□ -1.01
CIITA-201ENST00000324288 PRKG1Q13976 671 aa8.76□□□□□ -1.01
CIITA-201ENST00000324288 CWF19L2Q2TBE0 894 aaKnown RBP8.76□□□□□ -1.01
CIITA-201ENST00000324288 CCDC13Q8IYE1 715 aa8.76□□□□□ -1.01
CIITA-201ENST00000324288 TEX11Q8IYF3 940 aa8.76□□□□□ -1.01
CIITA-201ENST00000324288 ADKP55263 362 aaKnown RBP8.76□□□□□ -1.01
CIITA-201ENST00000324288 FOXD4Q12950 439 aaPredicted RBP8.76□□□□□ -1.01
CIITA-201ENST00000324288 PPFIA1Q13136 1202 aa8.76□□□□□ -1.01
CIITA-201ENST00000324288 ZMAT2Q96NC0 199 aaKnown RBP8.76□□□□□ -1.01
CIITA-201ENST00000324288 NUCKS1Q9H1E3 243 aaKnown RBP8.76□□□□□ -1.01
CIITA-201ENST00000324288 KCNH3Q9ULD8 1083 aa8.76□□□□□ -1.01
CIITA-201ENST00000324288 SLC4A7Q9Y6M7 1214 aa8.76□□□□□ -1.01
CIITA-201ENST00000324288 RAD50Q92878 1312 aa8.76□□□□□ -1.01
CIITA-201ENST00000324288 ZMYND10O75800 440 aa8.76□□□□□ -1.01
CIITA-201ENST00000324288 SECISBP2LQ93073 1101 aaKnown RBP8.76□□□□□ -1.01
CIITA-201ENST00000324288 FNBP1Q96RU3 617 aa8.76□□□□□ -1.01
CIITA-201ENST00000324288 DISP3Q9P2K9 1392 aa8.76□□□□□ -1.01
CIITA-201ENST00000324288 VPS37BQ9H9H4 285 aa8.76□□□□□ -1.01
CIITA-201ENST00000324288 USH1GQ495M9 461 aa8.76□□□□□ -1.01
CIITA-201ENST00000324288 NELFBQ8WX92 580 aa8.76□□□□□ -1.01
CIITA-201ENST00000324288 GRM8O00222 908 aa8.76□□□□□ -1.01
CIITA-201ENST00000324288 ANO1Q5XXA6 986 aa8.76□□□□□ -1.01
CIITA-201ENST00000324288 PPP1R9AQ9ULJ8 1098 aa8.76□□□□□ -1.01
CIITA-201ENST00000324288 ABCC5O15440 1437 aa8.76□□□□□ -1.01
CIITA-201ENST00000324288 RFX1P22670 979 aa8.76□□□□□ -1.01
CIITA-201ENST00000324288 BIRC2Q13490 618 aa8.76□□□□□ -1.01
CIITA-201ENST00000324288 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP8.76□□□□□ -1.01
CIITA-201ENST00000324288 CABLES1Q8TDN4 633 aa8.76□□□□□ -1.01
CIITA-201ENST00000324288 DHX29Q7Z478 1369 aaKnown RBP8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms