RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 TMTC1Q8IUR5 882 aa12.89□□□□□ -0.35
VPS39-201ENST00000318006 LRRC45Q96CN5 670 aa12.89□□□□□ -0.35
VPS39-201ENST00000318006 KIAA1524Q8TCG1 905 aa12.89□□□□□ -0.35
VPS39-201ENST00000318006 SEC62Q99442 399 aaKnown RBP12.89□□□□□ -0.35
VPS39-201ENST00000318006 NKIRAS1Q9NYS0 192 aa12.89□□□□□ -0.35
VPS39-201ENST00000318006 CAPN7Q9Y6W3 813 aa12.89□□□□□ -0.35
VPS39-201ENST00000318006 GNPATO15228 680 aa12.89□□□□□ -0.35
VPS39-201ENST00000318006 ZNF526Q8TF50 670 aaPredicted RBP12.89□□□□□ -0.35
VPS39-201ENST00000318006 NAP1L3Q99457 506 aaPredicted RBP12.89□□□□□ -0.35
VPS39-201ENST00000318006 LLPHQ9BRT6 129 aaKnown RBP12.89□□□□□ -0.35
VPS39-201ENST00000318006 SLAIN2Q9P270 581 aa12.89□□□□□ -0.35
VPS39-201ENST00000318006 ERVV-2B6SEH9 535 aa12.88□□□□□ -0.35
VPS39-201ENST00000318006 KRT2P35908 639 aa12.88□□□□□ -0.35
VPS39-201ENST00000318006 NLRP12P59046 1061 aa12.88□□□□□ -0.35
VPS39-201ENST00000318006 FAM173BQ6P4H8 233 aa12.88□□□□□ -0.35
VPS39-201ENST00000318006 SPATS2Q86XZ4 545 aaKnown RBP12.88□□□□□ -0.35
VPS39-201ENST00000318006 ERMNQ8TAM6 284 aa12.88□□□□□ -0.35
VPS39-201ENST00000318006 TMEM87BQ96K49 555 aa12.88□□□□□ -0.35
VPS39-201ENST00000318006 C6orf50Q9HD87 102 aa12.88□□□□□ -0.35
VPS39-201ENST00000318006 LMTK3Q96Q04 1460 aa12.88□□□□□ -0.35
VPS39-201ENST00000318006 ARID5AQ03989 594 aa12.88□□□□□ -0.35
VPS39-201ENST00000318006 IQUBQ8NA54 791 aa12.88□□□□□ -0.35
VPS39-201ENST00000318006 PPP1R12CQ9BZL4 782 aa12.88□□□□□ -0.35
VPS39-201ENST00000318006 GPAA1O43292 621 aa12.88□□□□□ -0.35
VPS39-201ENST00000318006 GSPT1P15170 499 aaKnown RBP12.88□□□□□ -0.35
VPS39-201ENST00000318006 PHKG2P15735 406 aa12.88□□□□□ -0.35
VPS39-201ENST00000318006 FERP16591 822 aa12.88□□□□□ -0.35
VPS39-201ENST00000318006 ATP5DP30049 168 aa12.88□□□□□ -0.35
VPS39-201ENST00000318006 GCKP35557 465 aa12.88□□□□□ -0.35
VPS39-201ENST00000318006 CEP85LQ5SZL2 805 aa12.88□□□□□ -0.35
VPS39-201ENST00000318006 MIPOL1Q8TD10 442 aa12.88□□□□□ -0.35
VPS39-201ENST00000318006 CFAP57Q96MR6 1250 aa12.88□□□□□ -0.35
VPS39-201ENST00000318006 VCXQ9H320 206 aa12.88□□□□□ -0.35
VPS39-201ENST00000318006 B4E1Z4 1266 aa12.88□□□□□ -0.35
VPS39-201ENST00000318006 PPFIA4O75335 1185 aa12.88□□□□□ -0.35
VPS39-201ENST00000318006 ETF1P62495 437 aaKnown RBP12.88□□□□□ -0.35
VPS39-201ENST00000318006 CALCOCO2Q13137 446 aa12.88□□□□□ -0.35
VPS39-201ENST00000318006 SND1Q7KZF4 910 aaKnown RBP eCLIP12.88□□□□□ -0.35
VPS39-201ENST00000318006 SREK1Q8WXA9 508 aaKnown RBP12.88□□□□□ -0.35
VPS39-201ENST00000318006 ATP8B1O43520 1251 aa12.87□□□□□ -0.35
VPS39-201ENST00000318006 CCT6AP40227 531 aaKnown RBP12.87□□□□□ -0.35
VPS39-201ENST00000318006 LRMPQ12912 555 aa12.87□□□□□ -0.35
VPS39-201ENST00000318006 RPGRIP1Q96KN7 1286 aa12.87□□□□□ -0.35
VPS39-201ENST00000318006 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.87□□□□□ -0.35
VPS39-201ENST00000318006 ATP5JP18859 108 aa12.87□□□□□ -0.35
VPS39-201ENST00000318006 MLKLQ8NB16 471 aa12.87□□□□□ -0.35
VPS39-201ENST00000318006 JAKMIP2Q96AA8 810 aa12.87□□□□□ -0.35
VPS39-201ENST00000318006 BAIAP2L1Q9UHR4 511 aa12.87□□□□□ -0.35
VPS39-201ENST00000318006 KIF1BO60333 1816 aa12.87□□□□□ -0.35
VPS39-201ENST00000318006 TBCAO75347 108 aaKnown RBP12.87□□□□□ -0.35
VPS39-201ENST00000318006 ZKSCAN3Q9BRR0 538 aa12.87□□□□□ -0.35
VPS39-201ENST00000318006 KDRP35968 1356 aa12.87□□□□□ -0.35
VPS39-201ENST00000318006 PAK2Q13177 524 aa12.87□□□□□ -0.35
VPS39-201ENST00000318006 TRAPPC3LQ5T215 181 aa12.87□□□□□ -0.35
VPS39-201ENST00000318006 GPT2Q8TD30 523 aa12.87□□□□□ -0.35
VPS39-201ENST00000318006 LPIN2Q92539 896 aa12.87□□□□□ -0.35
VPS39-201ENST00000318006 CCDC87Q9NVE4 849 aa12.87□□□□□ -0.35
VPS39-201ENST00000318006 ANGEL1Q9UNK9 670 aaKnown RBP12.87□□□□□ -0.35
VPS39-201ENST00000318006 ARAP3Q8WWN8 1544 aa12.86□□□□□ -0.35
VPS39-201ENST00000318006 CCDC38Q502W7 563 aa12.86□□□□□ -0.35
VPS39-201ENST00000318006 BEND3Q5T5X7 828 aa12.86□□□□□ -0.35
VPS39-201ENST00000318006 CROCCP2Q86T23 111 aa12.86□□□□□ -0.35
VPS39-201ENST00000318006 SYCP3Q8IZU3 236 aa12.86□□□□□ -0.35
VPS39-201ENST00000318006 OGFOD1Q8N543 542 aa12.86□□□□□ -0.35
VPS39-201ENST00000318006 TSNARE1Q96NA8 513 aa12.86□□□□□ -0.35
VPS39-201ENST00000318006 MED4Q9NPJ6 270 aa12.86□□□□□ -0.35
VPS39-201ENST00000318006 TET3O43151 1660 aa12.86□□□□□ -0.35
VPS39-201ENST00000318006 IBTKQ9P2D0 1353 aaPredicted RBP12.86□□□□□ -0.35
VPS39-201ENST00000318006 LRCH2Q5VUJ6 765 aa12.86□□□□□ -0.35
VPS39-201ENST00000318006 ANO1Q5XXA6 986 aa12.86□□□□□ -0.35
VPS39-201ENST00000318006 CCDC25Q86WR0 208 aa12.86□□□□□ -0.35
VPS39-201ENST00000318006 MICAL1Q8TDZ2 1067 aa12.86□□□□□ -0.35
VPS39-201ENST00000318006 RRP36Q96EU6 259 aaKnown RBP12.86□□□□□ -0.35
VPS39-201ENST00000318006 TM6SF1Q9BZW5 370 aa12.86□□□□□ -0.35
VPS39-201ENST00000318006 HDAC9Q9UKV0 1011 aa12.86□□□□□ -0.35
VPS39-201ENST00000318006 RRP15Q9Y3B9 282 aaKnown RBP12.86□□□□□ -0.35
VPS39-201ENST00000318006 NDUFB9Q9Y6M9 179 aa12.86□□□□□ -0.35
VPS39-201ENST00000318006 SHROOM2Q13796 1616 aa12.86□□□□□ -0.35
VPS39-201ENST00000318006 WHAMMP3Q1A5X7 153 aa12.86□□□□□ -0.35
VPS39-201ENST00000318006 XPO4Q9C0E2 1151 aaKnown RBP12.86□□□□□ -0.35
VPS39-201ENST00000318006 TFCP2L1Q9NZI6 479 aa12.86□□□□□ -0.35
VPS39-201ENST00000318006 JAG2Q9Y219 1238 aa12.86□□□□□ -0.35
VPS39-201ENST00000318006 SAMM50Q9Y512 469 aa12.86□□□□□ -0.35
VPS39-201ENST00000318006 IGSF1Q8N6C5 1336 aa12.86□□□□□ -0.35
VPS39-201ENST00000318006 KIF3CO14782 793 aa12.86□□□□□ -0.35
VPS39-201ENST00000318006 NOL3O60936 208 aaKnown RBP12.86□□□□□ -0.35
VPS39-201ENST00000318006 LIG3P49916 1009 aa12.86□□□□□ -0.35
VPS39-201ENST00000318006 TCIRG1Q13488 830 aa12.86□□□□□ -0.35
VPS39-201ENST00000318006 MRFAP1L1Q96HT8 127 aa12.86□□□□□ -0.35
VPS39-201ENST00000318006 ARMT1Q9H993 441 aa12.86□□□□□ -0.35
VPS39-201ENST00000318006 EFCC1Q9HA90 598 aa12.86□□□□□ -0.35
VPS39-201ENST00000318006 PYCARDQ9ULZ3 195 aa12.86□□□□□ -0.35
VPS39-201ENST00000318006 CIB2O75838 187 aa12.85□□□□□ -0.35
VPS39-201ENST00000318006 SETSIPP0DME0 302 aa12.85□□□□□ -0.35
VPS39-201ENST00000318006 HIBADHP31937 336 aaKnown RBP12.85□□□□□ -0.35
VPS39-201ENST00000318006 GNGT1P63211 74 aa12.85□□□□□ -0.35
VPS39-201ENST00000318006 NEDD9Q14511 834 aa12.85□□□□□ -0.35
VPS39-201ENST00000318006 WDR78Q5VTH9 848 aa12.85□□□□□ -0.35
VPS39-201ENST00000318006 RPAINQ86UA6 219 aa12.85□□□□□ -0.35
VPS39-201ENST00000318006 LRRC8AQ8IWT6 810 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms