RNA–Protein interactions for RNA: ENST00000296682.3

PRDM9-201, Transcript of PR/SET domain 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PRDM9, Length 3,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRDM9-201ENST00000296682 UBE2Q2Q8WVN8 375 aa10.75□□□□□ -0.69
PRDM9-201ENST00000296682 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.75□□□□□ -0.69
PRDM9-201ENST00000296682 HPS5Q9UPZ3 1129 aa10.75□□□□□ -0.69
PRDM9-201ENST00000296682 PICALMQ13492 652 aa10.74□□□□□ -0.69
PRDM9-201ENST00000296682 HSP90AA2PQ14568 343 aaPredicted RBP10.74□□□□□ -0.69
PRDM9-201ENST00000296682 NOLC1Q14978 699 aaKnown RBP eCLIP10.74□□□□□ -0.69
PRDM9-201ENST00000296682 FAM177A1Q8N128 213 aaPredicted RBP10.74□□□□□ -0.69
PRDM9-201ENST00000296682 CNNM3Q8NE01 707 aa10.74□□□□□ -0.69
PRDM9-201ENST00000296682 UIMC1Q96RL1 719 aa10.74□□□□□ -0.69
PRDM9-201ENST00000296682 TRIM37O94972 964 aa10.74□□□□□ -0.69
PRDM9-201ENST00000296682 ZNF202O95125 648 aa10.74□□□□□ -0.69
PRDM9-201ENST00000296682 TERF1P54274 439 aa10.74□□□□□ -0.69
PRDM9-201ENST00000296682 FAM160A1Q05DH4 1040 aa10.74□□□□□ -0.69
PRDM9-201ENST00000296682 ARID5BQ14865 1188 aa10.74□□□□□ -0.69
PRDM9-201ENST00000296682 TPD52L1Q16890 204 aaPredicted RBP10.74□□□□□ -0.69
PRDM9-201ENST00000296682 UVSSAQ2YD98 709 aa10.74□□□□□ -0.69
PRDM9-201ENST00000296682 CATIPQ7Z7H3 387 aa10.74□□□□□ -0.69
PRDM9-201ENST00000296682 VGLL2Q8N8G2 317 aa10.74□□□□□ -0.69
PRDM9-201ENST00000296682 CNBD1Q8NA66 436 aa10.74□□□□□ -0.69
PRDM9-201ENST00000296682 TNKSO95271 1327 aa10.74□□□□□ -0.69
PRDM9-201ENST00000296682 SH2B2O14492 632 aaPredicted RBP10.74□□□□□ -0.69
PRDM9-201ENST00000296682 SERPINC1P01008 464 aa10.74□□□□□ -0.69
PRDM9-201ENST00000296682 FAM84BQ96KN1 310 aaPredicted RBP10.74□□□□□ -0.69
PRDM9-201ENST00000296682 RNF41Q9H4P4 317 aaPredicted RBP10.74□□□□□ -0.69
PRDM9-201ENST00000296682 SPATA31A5Q5VU36 1347 aa10.74□□□□□ -0.69
PRDM9-201ENST00000296682 SPATA31A7Q8IWB4 1347 aa10.74□□□□□ -0.69
PRDM9-201ENST00000296682 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.73□□□□□ -0.69
PRDM9-201ENST00000296682 EIF6P56537 245 aaKnown RBP10.73□□□□□ -0.69
PRDM9-201ENST00000296682 CACNA1SQ13698 1873 aa10.73□□□□□ -0.69
PRDM9-201ENST00000296682 DHX8Q14562 1220 aaKnown RBP10.73□□□□□ -0.69
PRDM9-201ENST00000296682 MAPKAPK5Q8IW41 473 aa10.73□□□□□ -0.69
PRDM9-201ENST00000296682 ZNF654Q8IZM8 581 aa10.73□□□□□ -0.69
PRDM9-201ENST00000296682 PLIN2Q99541 437 aa10.73□□□□□ -0.69
PRDM9-201ENST00000296682 ANO10Q9NW15 660 aa10.73□□□□□ -0.69
PRDM9-201ENST00000296682 ZNF500O60304 480 aaPredicted RBP10.73□□□□□ -0.69
PRDM9-201ENST00000296682 COBLO75128 1261 aa10.73□□□□□ -0.69
PRDM9-201ENST00000296682 USP17L8P0C7I0 530 aa10.73□□□□□ -0.69
PRDM9-201ENST00000296682 ZNF174Q15697 407 aa10.73□□□□□ -0.69
PRDM9-201ENST00000296682 ZNF827Q17R98 1081 aa10.73□□□□□ -0.69
PRDM9-201ENST00000296682 DYNLL2Q96FJ2 89 aa10.73□□□□□ -0.69
PRDM9-201ENST00000296682 NBPF3Q9H094 633 aa10.73□□□□□ -0.69
PRDM9-201ENST00000296682 NAT10Q9H0A0 1025 aaKnown RBP10.73□□□□□ -0.69
PRDM9-201ENST00000296682 RCOR1Q9UKL0 485 aa10.73□□□□□ -0.69
PRDM9-201ENST00000296682 PYCARDQ9ULZ3 195 aa10.73□□□□□ -0.69
PRDM9-201ENST00000296682 KIF23Q02241 960 aaPredicted RBP10.73□□□□□ -0.69
PRDM9-201ENST00000296682 NFIXQ14938 502 aa10.73□□□□□ -0.69
PRDM9-201ENST00000296682 STX1AQ16623 288 aa10.73□□□□□ -0.69
PRDM9-201ENST00000296682 MSL1Q68DK7 614 aa10.73□□□□□ -0.69
PRDM9-201ENST00000296682 CTCFLQ8NI51 663 aaPredicted RBP10.73□□□□□ -0.69
PRDM9-201ENST00000296682 TGFBRAP1Q8WUH2 860 aa10.73□□□□□ -0.69
PRDM9-201ENST00000296682 TMEM87BQ96K49 555 aa10.73□□□□□ -0.69
PRDM9-201ENST00000296682 CPVLQ9H3G5 476 aa10.73□□□□□ -0.69
PRDM9-201ENST00000296682 TMX1Q9H3N1 280 aa10.73□□□□□ -0.69
PRDM9-201ENST00000296682 CNNM2Q9H8M5 875 aa10.73□□□□□ -0.69
PRDM9-201ENST00000296682 NLRP5P59047 1200 aa10.72□□□□□ -0.69
PRDM9-201ENST00000296682 MECOMQ03112 1051 aa10.72□□□□□ -0.69
PRDM9-201ENST00000296682 PNOCQ13519 176 aa10.72□□□□□ -0.69
PRDM9-201ENST00000296682 GRAMD1CQ8IYS0 662 aa10.72□□□□□ -0.69
PRDM9-201ENST00000296682 JMYQ8N9B5 988 aa10.72□□□□□ -0.69
PRDM9-201ENST00000296682 LINC00301Q8NCQ3 95 aa10.72□□□□□ -0.69
PRDM9-201ENST00000296682 KCNG4Q8TDN1 519 aa10.72□□□□□ -0.69
PRDM9-201ENST00000296682 COL4A1P02462 1669 aa10.72□□□□□ -0.69
PRDM9-201ENST00000296682 DDX60LQ5H9U9 1706 aaKnown RBP10.72□□□□□ -0.69
PRDM9-201ENST00000296682 UFL1O94874 794 aa10.72□□□□□ -0.69
PRDM9-201ENST00000296682 GOLGA8HP0CJ92 632 aa10.72□□□□□ -0.69
PRDM9-201ENST00000296682 PFKFB1P16118 471 aa10.72□□□□□ -0.69
PRDM9-201ENST00000296682 XBP1P17861 261 aa10.72□□□□□ -0.69
PRDM9-201ENST00000296682 RBM5P52756 815 aaKnown RBP eCLIP10.72□□□□□ -0.69
PRDM9-201ENST00000296682 TPM4P67936 248 aa10.72□□□□□ -0.69
PRDM9-201ENST00000296682 DPCR1Q3MIW9 517 aa10.72□□□□□ -0.69
PRDM9-201ENST00000296682 AMIGO3Q86WK7 504 aa10.72□□□□□ -0.69
PRDM9-201ENST00000296682 AMOTL1Q8IY63 956 aa10.72□□□□□ -0.69
PRDM9-201ENST00000296682 FANCBQ8NB91 859 aa10.72□□□□□ -0.69
PRDM9-201ENST00000296682 CRNKL1Q9BZJ0 848 aaKnown RBP10.72□□□□□ -0.69
PRDM9-201ENST00000296682 MYH13Q9UKX3 1938 aa10.72□□□□□ -0.69
PRDM9-201ENST00000296682 ARID4AP29374 1257 aaPredicted RBP10.72□□□□□ -0.69
PRDM9-201ENST00000296682 CFAP100Q494V2 611 aa10.72□□□□□ -0.69
PRDM9-201ENST00000296682 SLC44A5Q8NCS7 719 aa10.72□□□□□ -0.69
PRDM9-201ENST00000296682 OXER1Q8TDS5 423 aa10.72□□□□□ -0.69
PRDM9-201ENST00000296682 LY9Q9HBG7 655 aa10.72□□□□□ -0.69
PRDM9-201ENST00000296682 FAM205CA6NFA0 338 aa10.71□□□□□ -0.69
PRDM9-201ENST00000296682 LDHBP07195 334 aaKnown RBP10.71□□□□□ -0.69
PRDM9-201ENST00000296682 STX17P56962 302 aa10.71□□□□□ -0.69
PRDM9-201ENST00000296682 ZNF444Q8N0Y2 327 aaPredicted RBP10.71□□□□□ -0.69
PRDM9-201ENST00000296682 IGDCC4Q8TDY8 1250 aa10.71□□□□□ -0.69
PRDM9-201ENST00000296682 ZNF804BA4D1E1 1349 aa10.71□□□□□ -0.69
PRDM9-201ENST00000296682 CCDC196A0A1B0GTZ2 297 aa10.71□□□□□ -0.69
PRDM9-201ENST00000296682 OFD1O75665 1012 aa10.71□□□□□ -0.69
PRDM9-201ENST00000296682 PLEKHA8P1O95397 391 aa10.71□□□□□ -0.69
PRDM9-201ENST00000296682 FGFR2P21802 821 aa10.71□□□□□ -0.69
PRDM9-201ENST00000296682 CDC25AP30304 524 aa10.71□□□□□ -0.69
PRDM9-201ENST00000296682 OLFM4Q6UX06 510 aa10.71□□□□□ -0.69
PRDM9-201ENST00000296682 AEBP2Q6ZN18 517 aaPredicted RBP10.71□□□□□ -0.69
PRDM9-201ENST00000296682 TMC6Q7Z403 805 aa10.71□□□□□ -0.69
PRDM9-201ENST00000296682 ILDR1Q86SU0 546 aaPredicted RBP10.71□□□□□ -0.69
PRDM9-201ENST00000296682 DHX58Q96C10 678 aa10.71□□□□□ -0.69
PRDM9-201ENST00000296682 NYXQ9GZU5 481 aa10.71□□□□□ -0.69
PRDM9-201ENST00000296682 FOCADQ5VW36 1801 aa10.71□□□□□ -0.7
PRDM9-201ENST00000296682 POLR2DO15514 142 aaKnown RBP10.71□□□□□ -0.7
PRDM9-201ENST00000296682 WDHD1O75717 1129 aaPredicted RBP10.71□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms