RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 NOL10Q9BSC4 688 aaKnown RBP13.3□□□□□ -0.28
CUX1-202ENST00000292538 FUCA2Q9BTY2 467 aa13.3□□□□□ -0.28
CUX1-202ENST00000292538 TTC12Q9H892 705 aaPredicted RBP13.3□□□□□ -0.28
CUX1-202ENST00000292538 VPS54Q9P1Q0 977 aa13.3□□□□□ -0.28
CUX1-202ENST00000292538 GGA1Q9UJY5 639 aa13.3□□□□□ -0.28
CUX1-202ENST00000292538 XDHP47989 1333 aa13.3□□□□□ -0.28
CUX1-202ENST00000292538 WDR19Q8NEZ3 1342 aa13.3□□□□□ -0.28
CUX1-202ENST00000292538 AP5Z1O43299 807 aa13.3□□□□□ -0.28
CUX1-202ENST00000292538 SLC44A5Q8NCS7 719 aa13.3□□□□□ -0.28
CUX1-202ENST00000292538 MRPS27Q92552 414 aaKnown RBP13.3□□□□□ -0.28
CUX1-202ENST00000292538 MKNK2Q9HBH9 465 aa13.3□□□□□ -0.28
CUX1-202ENST00000292538 CBX8Q9HC52 389 aa13.3□□□□□ -0.28
CUX1-202ENST00000292538 RTEL1Q9NZ71 1219 aa13.3□□□□□ -0.28
CUX1-202ENST00000292538 PLEKHA8P1O95397 391 aa13.29□□□□□ -0.28
CUX1-202ENST00000292538 DIS3L2Q8IYB7 885 aaKnown RBP13.29□□□□□ -0.28
CUX1-202ENST00000292538 RBM17Q96I25 401 aaKnown RBP13.29□□□□□ -0.28
CUX1-202ENST00000292538 G3V3G9 751 aa13.29□□□□□ -0.28
CUX1-202ENST00000292538 DCAF8Q5TAQ9 597 aa13.29□□□□□ -0.28
CUX1-202ENST00000292538 FAM200AQ8TCP9 573 aa13.29□□□□□ -0.28
CUX1-202ENST00000292538 PDLIM2Q96JY6 352 aa13.29□□□□□ -0.28
CUX1-202ENST00000292538 DDX60Q8IY21 1712 aaKnown RBP13.29□□□□□ -0.28
CUX1-202ENST00000292538 LAMA4Q16363 1823 aa13.29□□□□□ -0.28
CUX1-202ENST00000292538 ONECUT3O60422 494 aaPredicted RBP13.29□□□□□ -0.28
CUX1-202ENST00000292538 FAM160A1Q05DH4 1040 aa13.29□□□□□ -0.28
CUX1-202ENST00000292538 SNW1Q13573 536 aaKnown RBP13.29□□□□□ -0.28
CUX1-202ENST00000292538 SPTY2D1Q68D10 685 aaPredicted RBP13.29□□□□□ -0.28
CUX1-202ENST00000292538 BRAPQ7Z569 592 aa13.29□□□□□ -0.28
CUX1-202ENST00000292538 OXER1Q8TDS5 423 aa13.29□□□□□ -0.28
CUX1-202ENST00000292538 TRIM5Q9C035 493 aa13.29□□□□□ -0.28
CUX1-202ENST00000292538 CCDC39Q9UFE4 941 aa13.29□□□□□ -0.28
CUX1-202ENST00000292538 CCDC196A0A1B0GTZ2 297 aa13.28□□□□□ -0.28
CUX1-202ENST00000292538 SEMA3EO15041 775 aa13.28□□□□□ -0.28
CUX1-202ENST00000292538 DOK7Q18PE1 504 aa13.28□□□□□ -0.28
CUX1-202ENST00000292538 MFSD14BQ5SR56 506 aa13.28□□□□□ -0.28
CUX1-202ENST00000292538 TMTC2Q8N394 836 aa13.28□□□□□ -0.28
CUX1-202ENST00000292538 CRACR2BQ8N4Y2 399 aaPredicted RBP13.28□□□□□ -0.28
CUX1-202ENST00000292538 KCNG4Q8TDN1 519 aa13.28□□□□□ -0.28
CUX1-202ENST00000292538 ZNF622Q969S3 477 aaKnown RBP eCLIP13.28□□□□□ -0.281e-7■■□□□ 13.1
CUX1-202ENST00000292538 CABP5Q9NP86 173 aa13.28□□□□□ -0.28
CUX1-202ENST00000292538 POLLQ9UGP5 575 aa13.28□□□□□ -0.28
CUX1-202ENST00000292538 LEMD3Q9Y2U8 911 aa13.28□□□□□ -0.28
CUX1-202ENST00000292538 BECN2A8MW95 431 aa13.28□□□□□ -0.28
CUX1-202ENST00000292538 WDHD1O75717 1129 aaPredicted RBP13.28□□□□□ -0.28
CUX1-202ENST00000292538 FMNL1O95466 1100 aaPredicted RBP13.28□□□□□ -0.28
CUX1-202ENST00000292538 SLC3A2P08195 630 aaKnown RBP13.28□□□□□ -0.28
CUX1-202ENST00000292538 CLCN1P35523 988 aa13.28□□□□□ -0.28
CUX1-202ENST00000292538 GTF2IP78347 998 aa13.28□□□□□ -0.28
CUX1-202ENST00000292538 TFAP4Q01664 338 aa13.28□□□□□ -0.28
CUX1-202ENST00000292538 PICALMQ13492 652 aa13.28□□□□□ -0.28
CUX1-202ENST00000292538 C17orf53Q8N3J3 647 aaPredicted RBP13.28□□□□□ -0.28
CUX1-202ENST00000292538 WDR66Q8TBY9 1149 aa13.28□□□□□ -0.28
CUX1-202ENST00000292538 MXD3Q9BW11 206 aa13.28□□□□□ -0.28
CUX1-202ENST00000292538 BRIP1Q9BX63 1249 aa13.28□□□□□ -0.28
CUX1-202ENST00000292538 CD209Q9NNX6 404 aa13.28□□□□□ -0.28
CUX1-202ENST00000292538 STX8Q9UNK0 236 aa13.28□□□□□ -0.28
CUX1-202ENST00000292538 IFNAR1P17181 557 aa13.27□□□□□ -0.28
CUX1-202ENST00000292538 PDE4BQ07343 736 aa13.27□□□□□ -0.28
CUX1-202ENST00000292538 ADALQ6DHV7 355 aa13.27□□□□□ -0.28
CUX1-202ENST00000292538 C11orf57Q6ZUT1 292 aaPredicted RBP13.27□□□□□ -0.28
CUX1-202ENST00000292538 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.27□□□□□ -0.28
CUX1-202ENST00000292538 BTAF1O14981 1849 aa13.27□□□□□ -0.28
CUX1-202ENST00000292538 USP17L3A6NCW0 530 aa13.27□□□□□ -0.29
CUX1-202ENST00000292538 USP17L4A6NCW7 530 aa13.27□□□□□ -0.29
CUX1-202ENST00000292538 GOLGA6L19H0YKK7 550 aa13.27□□□□□ -0.29
CUX1-202ENST00000292538 ZNF827Q17R98 1081 aa13.27□□□□□ -0.29
CUX1-202ENST00000292538 USP17L1Q7RTZ2 530 aa13.27□□□□□ -0.29
CUX1-202ENST00000292538 UVSSAQ2YD98 709 aa13.26□□□□□ -0.29
CUX1-202ENST00000292538 PDILTQ8N807 584 aa13.26□□□□□ -0.29
CUX1-202ENST00000292538 LRP5O75197 1615 aa13.26□□□□□ -0.29
CUX1-202ENST00000292538 BAZ2BQ9UIF8 2168 aaKnown RBP13.26□□□□□ -0.29
CUX1-202ENST00000292538 FAM205CA6NFA0 338 aa13.26□□□□□ -0.29
CUX1-202ENST00000292538 ZNF202O95125 648 aa13.26□□□□□ -0.29
CUX1-202ENST00000292538 BAG3O95817 575 aa13.26□□□□□ -0.29
CUX1-202ENST00000292538 ADRA2BP18089 450 aa13.26□□□□□ -0.29
CUX1-202ENST00000292538 BTDP43251 543 aa13.26□□□□□ -0.29
CUX1-202ENST00000292538 PLCD1P51178 756 aa13.26□□□□□ -0.29
CUX1-202ENST00000292538 WASF1Q92558 559 aa13.26□□□□□ -0.29
CUX1-202ENST00000292538 POLR3EQ9NVU0 708 aa13.26□□□□□ -0.29
CUX1-202ENST00000292538 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.26□□□□□ -0.291e-9■■□□□ 12.2
CUX1-202ENST00000292538 SRCAPQ6ZRS2 3230 aa13.26□□□□□ -0.29
CUX1-202ENST00000292538 POLRMTO00411 1230 aaKnown RBP13.26□□□□□ -0.29
CUX1-202ENST00000292538 PFKFB1P16118 471 aa13.26□□□□□ -0.29
CUX1-202ENST00000292538 SEC23AQ15436 765 aa13.26□□□□□ -0.29
CUX1-202ENST00000292538 SLC27A3Q5K4L6 730 aa13.26□□□□□ -0.29
CUX1-202ENST00000292538 DNTTIP2Q5QJE6 756 aaKnown RBP13.26□□□□□ -0.29
CUX1-202ENST00000292538 COL23A1Q86Y22 540 aaPredicted RBP13.26□□□□□ -0.29
CUX1-202ENST00000292538 NOSTRINQ8IVI9 506 aa13.26□□□□□ -0.29
CUX1-202ENST00000292538 AMOTL1Q8IY63 956 aa13.26□□□□□ -0.29
CUX1-202ENST00000292538 TDRD7Q8NHU6 1098 aaKnown RBP13.26□□□□□ -0.29
CUX1-202ENST00000292538 CTCFLQ8NI51 663 aaPredicted RBP13.26□□□□□ -0.29
CUX1-202ENST00000292538 ATP8A2Q9NTI2 1148 aa13.26□□□□□ -0.29
CUX1-202ENST00000292538 DEXIO95424 95 aa13.25□□□□□ -0.29
CUX1-202ENST00000292538 ATL3Q6DD88 541 aa13.25□□□□□ -0.29
CUX1-202ENST00000292538 ZNF444Q8N0Y2 327 aaPredicted RBP13.25□□□□□ -0.29
CUX1-202ENST00000292538 TBC1D16Q8TBP0 767 aa13.25□□□□□ -0.29
CUX1-202ENST00000292538 MMP1P03956 469 aa13.25□□□□□ -0.29
CUX1-202ENST00000292538 MMP10P09238 476 aa13.25□□□□□ -0.29
CUX1-202ENST00000292538 TSPY3P0CV98 308 aa13.25□□□□□ -0.29
CUX1-202ENST00000292538 TSPY8P0CW00 308 aa13.25□□□□□ -0.29
CUX1-202ENST00000292538 SCNN1DP51172 638 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms