RNA–Protein interactions for RNA: ENST00000285116.7

SKA1-201, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SKA1, Length 2,905 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-201ENST00000285116 ERCC4Q92889 916 aaPredicted RBP11.88□□□□□ -0.51
SKA1-201ENST00000285116 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.88□□□□□ -0.51
SKA1-201ENST00000285116 CARD6Q9BX69 1037 aa11.88□□□□□ -0.51
SKA1-201ENST00000285116 LY9Q9HBG7 655 aa11.88□□□□□ -0.51
SKA1-201ENST00000285116 HOOK1Q9UJC3 728 aaKnown RBP11.88□□□□□ -0.51
SKA1-201ENST00000285116 CICQ96RK0 1608 aaPredicted RBP11.88□□□□□ -0.51
SKA1-201ENST00000285116 ARHGAP6O43182 974 aa11.88□□□□□ -0.51
SKA1-201ENST00000285116 ZSCAN12O43309 604 aa11.88□□□□□ -0.51
SKA1-201ENST00000285116 UQCRFS1P1P0C7P4 283 aa11.88□□□□□ -0.51
SKA1-201ENST00000285116 METTL16Q86W50 562 aaKnown RBP11.88□□□□□ -0.51
SKA1-201ENST00000285116 REXO1L1PQ8IX06 675 aa11.88□□□□□ -0.51
SKA1-201ENST00000285116 CERKQ8TCT0 537 aa11.88□□□□□ -0.51
SKA1-201ENST00000285116 FAM217BQ9NTX9 383 aaPredicted RBP11.88□□□□□ -0.51
SKA1-201ENST00000285116 KCNQ2O43526 872 aa11.87□□□□□ -0.51
SKA1-201ENST00000285116 SASH3O75995 380 aa11.87□□□□□ -0.51
SKA1-201ENST00000285116 FMNL1O95466 1100 aaPredicted RBP11.87□□□□□ -0.51
SKA1-201ENST00000285116 SARSP49591 514 aaKnown RBP11.87□□□□□ -0.51
SKA1-201ENST00000285116 UBASH3AP57075 661 aa11.87□□□□□ -0.51
SKA1-201ENST00000285116 HSP90AB3PQ58FF7 597 aa11.87□□□□□ -0.51
SKA1-201ENST00000285116 CCDC102BQ68D86 513 aa11.87□□□□□ -0.51
SKA1-201ENST00000285116 OLFM4Q6UX06 510 aa11.87□□□□□ -0.51
SKA1-201ENST00000285116 FBXW7Q969H0 707 aa11.87□□□□□ -0.51
SKA1-201ENST00000285116 EXOC4Q96A65 974 aa11.87□□□□□ -0.51
SKA1-201ENST00000285116 MPHOSPH8Q99549 860 aa11.87□□□□□ -0.51
SKA1-201ENST00000285116 TBC1D2BQ9UPU7 963 aa11.87□□□□□ -0.51
SKA1-201ENST00000285116 PARP3Q9Y6F1 533 aa11.87□□□□□ -0.51
SKA1-201ENST00000285116 RREB1Q92766 1687 aa11.87□□□□□ -0.51
SKA1-201ENST00000285116 UBN2Q6ZU65 1347 aa11.87□□□□□ -0.51
SKA1-201ENST00000285116 ZBTB43O43298 467 aa11.87□□□□□ -0.51
SKA1-201ENST00000285116 ZNF18P17022 549 aa11.87□□□□□ -0.51
SKA1-201ENST00000285116 IFNAR1P17181 557 aa11.87□□□□□ -0.51
SKA1-201ENST00000285116 KIF6Q6ZMV9 814 aa11.87□□□□□ -0.51
SKA1-201ENST00000285116 CNNM2Q9H8M5 875 aa11.87□□□□□ -0.51
SKA1-201ENST00000285116 DACH1Q9UI36 760 aa11.87□□□□□ -0.51
SKA1-201ENST00000285116 MYH6P13533 1939 aa11.87□□□□□ -0.51
SKA1-201ENST00000285116 MYO1CO00159 1063 aa11.87□□□□□ -0.51
SKA1-201ENST00000285116 GIGYF2Q6Y7W6 1299 aaKnown RBP11.87□□□□□ -0.51
SKA1-201ENST00000285116 KRI1Q8N9T8 703 aaKnown RBP11.87□□□□□ -0.51
SKA1-201ENST00000285116 MLKLQ8NB16 471 aa11.87□□□□□ -0.51
SKA1-201ENST00000285116 FOXP1Q9H334 677 aaPredicted RBP11.87□□□□□ -0.51
SKA1-201ENST00000285116 ARFGAP3Q9NP61 516 aa11.87□□□□□ -0.51
SKA1-201ENST00000285116 RSPH14Q9UHP6 348 aa11.87□□□□□ -0.51
SKA1-201ENST00000285116 IL2RBP14784 551 aa11.86□□□□□ -0.51
SKA1-201ENST00000285116 LMOD1P29536 600 aaPredicted RBP11.86□□□□□ -0.51
SKA1-201ENST00000285116 CDC27P30260 824 aa11.86□□□□□ -0.51
SKA1-201ENST00000285116 TRIM29Q14134 588 aa11.86□□□□□ -0.51
SKA1-201ENST00000285116 CTR9Q6PD62 1173 aa11.86□□□□□ -0.51
SKA1-201ENST00000285116 TTLL11Q8NHH1 800 aa11.86□□□□□ -0.51
SKA1-201ENST00000285116 SPATA20Q8TB22 786 aa11.86□□□□□ -0.51
SKA1-201ENST00000285116 ENOX1Q8TC92 643 aaKnown RBP11.86□□□□□ -0.51
SKA1-201ENST00000285116 STRBPQ96SI9 672 aaKnown RBP11.86□□□□□ -0.51
SKA1-201ENST00000285116 ZCCHC17Q9NP64 241 aaKnown RBP11.86□□□□□ -0.51
SKA1-201ENST00000285116 KCNH3Q9ULD8 1083 aa11.86□□□□□ -0.51
SKA1-201ENST00000285116 BCL9LQ86UU0 1499 aa11.86□□□□□ -0.51
SKA1-201ENST00000285116 STX10O60499 249 aa11.86□□□□□ -0.51
SKA1-201ENST00000285116 RANBP6O60518 1105 aaKnown RBP11.86□□□□□ -0.51
SKA1-201ENST00000285116 ATP1A3P13637 1013 aa11.86□□□□□ -0.51
SKA1-201ENST00000285116 IARSP41252 1262 aaKnown RBP11.86□□□□□ -0.51
SKA1-201ENST00000285116 IRX3P78415 501 aaPredicted RBP11.86□□□□□ -0.51
SKA1-201ENST00000285116 NOSTRINQ8IVI9 506 aa11.86□□□□□ -0.51
SKA1-201ENST00000285116 IQUBQ8NA54 791 aa11.86□□□□□ -0.51
SKA1-201ENST00000285116 SOS2Q07890 1332 aaPredicted RBP11.85□□□□□ -0.51
SKA1-201ENST00000285116 BIN1O00499 593 aa11.85□□□□□ -0.51
SKA1-201ENST00000285116 PDE6AP16499 860 aa11.85□□□□□ -0.51
SKA1-201ENST00000285116 PTPREP23469 700 aa11.85□□□□□ -0.51
SKA1-201ENST00000285116 CASQ1P31415 396 aa11.85□□□□□ -0.51
SKA1-201ENST00000285116 CTSWP56202 376 aa11.85□□□□□ -0.51
SKA1-201ENST00000285116 TAF7LQ5H9L4 462 aa11.85□□□□□ -0.51
SKA1-201ENST00000285116 METTL24Q5JXM2 366 aa11.85□□□□□ -0.51
SKA1-201ENST00000285116 KANK3Q6NY19 840 aa11.85□□□□□ -0.51
SKA1-201ENST00000285116 GJB4Q9NTQ9 266 aa11.85□□□□□ -0.51
SKA1-201ENST00000285116 WNK3Q9BYP7 1800 aa11.85□□□□□ -0.51
SKA1-201ENST00000285116 A0A1B0GUL6 1792 aa11.85□□□□□ -0.51
SKA1-201ENST00000285116 MMP1P03956 469 aa11.85□□□□□ -0.51
SKA1-201ENST00000285116 FGFR2P21802 821 aa11.85□□□□□ -0.51
SKA1-201ENST00000285116 SLC9C2Q5TAH2 1124 aa11.85□□□□□ -0.51
SKA1-201ENST00000285116 JAKMIP3Q5VZ66 844 aa11.85□□□□□ -0.51
SKA1-201ENST00000285116 DPF2Q92785 391 aa11.85□□□□□ -0.51
SKA1-201ENST00000285116 CCDC85AQ96PX6 553 aaPredicted RBP11.85□□□□□ -0.51
SKA1-201ENST00000285116 KRT23Q9C075 422 aa11.85□□□□□ -0.51
SKA1-201ENST00000285116 PIH1D3Q9NQM4 214 aaKnown RBP11.85□□□□□ -0.51
SKA1-201ENST00000285116 INTS13Q9NVM9 706 aa11.85□□□□□ -0.51
SKA1-201ENST00000285116 PHLPP1O60346 1717 aa11.85□□□□□ -0.51
SKA1-201ENST00000285116 PNPLA7Q6ZV29 1317 aa11.85□□□□□ -0.51
SKA1-201ENST00000285116 ANKRD18BA2A2Z9 1011 aa11.84□□□□□ -0.51
SKA1-201ENST00000285116 PATL2C9JE40 543 aaKnown RBP11.84□□□□□ -0.51
SKA1-201ENST00000285116 FANCGO15287 622 aa11.84□□□□□ -0.51
SKA1-201ENST00000285116 PDE8BO95263 885 aa11.84□□□□□ -0.51
SKA1-201ENST00000285116 SERPINC1P01008 464 aa11.84□□□□□ -0.51
SKA1-201ENST00000285116 TOP1P11387 765 aaKnown RBP11.84□□□□□ -0.51
SKA1-201ENST00000285116 MARCKSP29966 332 aaPredicted RBP11.84□□□□□ -0.51
SKA1-201ENST00000285116 MAP3K9P80192 1104 aa11.84□□□□□ -0.51
SKA1-201ENST00000285116 SSRP1Q08945 709 aaKnown RBP11.84□□□□□ -0.51
SKA1-201ENST00000285116 PNOCQ13519 176 aa11.84□□□□□ -0.51
SKA1-201ENST00000285116 MORC3Q14149 939 aa11.84□□□□□ -0.51
SKA1-201ENST00000285116 PPP2R5BQ15173 497 aa11.84□□□□□ -0.51
SKA1-201ENST00000285116 RILPL1Q5EBL4 403 aa11.84□□□□□ -0.51
SKA1-201ENST00000285116 FOXP4Q8IVH2 680 aaPredicted RBP11.84□□□□□ -0.51
SKA1-201ENST00000285116 RABGGTAQ92696 567 aa11.84□□□□□ -0.51
SKA1-201ENST00000285116 FUT8Q9BYC5 575 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms