RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 ZNF277Q9NRM2 450 aaPredicted RBP19.31■□□□□ 0.68
USP4-201ENST00000265560 FAM205AQ6ZU69 1335 aa19.31■□□□□ 0.68
USP4-201ENST00000265560 PPIP5K2O43314 1243 aa19.31■□□□□ 0.68
USP4-201ENST00000265560 PDCP20941 246 aa19.31■□□□□ 0.68
USP4-201ENST00000265560 RBM5P52756 815 aaKnown RBP eCLIP19.31■□□□□ 0.68
USP4-201ENST00000265560 FBXL16Q8N461 479 aa19.31■□□□□ 0.68
USP4-201ENST00000265560 ENAHQ8N8S7 591 aaPredicted RBP19.31■□□□□ 0.68
USP4-201ENST00000265560 MKRN1Q9UHC7 482 aaKnown RBP19.31■□□□□ 0.68
USP4-201ENST00000265560 ANAPC4Q9UJX5 808 aa19.31■□□□□ 0.68
USP4-201ENST00000265560 GPR75-ASB3A0A0A6YYF3 556 aa19.31■□□□□ 0.68
USP4-201ENST00000265560 hCG_1642624A0A1W2PR95 340 aa19.31■□□□□ 0.68
USP4-201ENST00000265560 RHBDL3P58872 404 aa19.31■□□□□ 0.68
USP4-201ENST00000265560 FAM217BQ9NTX9 383 aaPredicted RBP19.31■□□□□ 0.68
USP4-201ENST00000265560 SART3Q15020 963 aaKnown RBP19.3■□□□□ 0.68
USP4-201ENST00000265560 FTOQ9C0B1 505 aaKnown RBP eCLIP19.3■□□□□ 0.68
USP4-201ENST00000265560 PPP4CP60510 307 aa19.29■□□□□ 0.68
USP4-201ENST00000265560 C12orf60Q5U649 245 aa19.29■□□□□ 0.68
USP4-201ENST00000265560 TSPY2A6NKD2 308 aa19.29■□□□□ 0.68
USP4-201ENST00000265560 ZSCAN10Q96SZ4 725 aaPredicted RBP19.29■□□□□ 0.68
USP4-201ENST00000265560 LLPHQ9BRT6 129 aaKnown RBP19.29■□□□□ 0.68
USP4-201ENST00000265560 ARPP21Q9UBL0 812 aaPredicted RBP19.29■□□□□ 0.68
USP4-201ENST00000265560 ADAMTSL1Q8N6G6 1762 aa19.29■□□□□ 0.68
USP4-201ENST00000265560 USP17L3A6NCW0 530 aa19.29■□□□□ 0.68
USP4-201ENST00000265560 USP17L4A6NCW7 530 aa19.29■□□□□ 0.68
USP4-201ENST00000265560 USP17L1Q7RTZ2 530 aa19.29■□□□□ 0.68
USP4-201ENST00000265560 PIBF1Q8WXW3 757 aa19.29■□□□□ 0.68
USP4-201ENST00000265560 MKNK2Q9HBH9 465 aa19.29■□□□□ 0.68
USP4-201ENST00000265560 GIMAP6Q6P9H5 292 aa19.28■□□□□ 0.68
USP4-201ENST00000265560 FLT1P17948 1338 aa19.28■□□□□ 0.68
USP4-201ENST00000265560 WDR19Q8NEZ3 1342 aa19.28■□□□□ 0.68
USP4-201ENST00000265560 YDJCA8MPS7 323 aa19.28■□□□□ 0.68
USP4-201ENST00000265560 RAD17O75943 681 aa19.28■□□□□ 0.68
USP4-201ENST00000265560 LIFRP42702 1097 aa19.28■□□□□ 0.68
USP4-201ENST00000265560 TFAP4Q01664 338 aa19.28■□□□□ 0.68
USP4-201ENST00000265560 SGMS1Q86VZ5 419 aa19.28■□□□□ 0.68
USP4-201ENST00000265560 DDX4Q9NQI0 724 aaKnown RBP19.28■□□□□ 0.68
USP4-201ENST00000265560 TCP10Q12799 353 aa19.27■□□□□ 0.68
USP4-201ENST00000265560 SYNE3Q6ZMZ3 975 aa19.27■□□□□ 0.68
USP4-201ENST00000265560 PODNQ7Z5L7 613 aa19.27■□□□□ 0.68
USP4-201ENST00000265560 ZNF654Q8IZM8 581 aa19.27■□□□□ 0.68
USP4-201ENST00000265560 SLC26A6Q9BXS9 759 aa19.27■□□□□ 0.68
USP4-201ENST00000265560 USP40Q9NVE5 1235 aa19.27■□□□□ 0.68
USP4-201ENST00000265560 GUCY1A2P33402 732 aa19.27■□□□□ 0.68
USP4-201ENST00000265560 HMGN5P82970 282 aaKnown RBP19.27■□□□□ 0.68
USP4-201ENST00000265560 NFIAQ12857 509 aa19.27■□□□□ 0.68
USP4-201ENST00000265560 SEC23AQ15436 765 aa19.27■□□□□ 0.68
USP4-201ENST00000265560 IFIT1BQ5T764 474 aaKnown RBP19.27■□□□□ 0.68
USP4-201ENST00000265560 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.27■□□□□ 0.68
USP4-201ENST00000265560 DHX16O60231 1041 aaKnown RBP19.27■□□□□ 0.67
USP4-201ENST00000265560 PDE4BQ07343 736 aa19.27■□□□□ 0.67
USP4-201ENST00000265560 IQCA1Q86XH1 822 aa19.27■□□□□ 0.67
USP4-201ENST00000265560 MAST2Q6P0Q8 1798 aa19.26■□□□□ 0.67
USP4-201ENST00000265560 ZFPM1Q8IX07 1006 aa19.26■□□□□ 0.67
USP4-201ENST00000265560 NTRK3Q16288 839 aa19.25■□□□□ 0.67
USP4-201ENST00000265560 KLHL40Q2TBA0 621 aa19.25■□□□□ 0.67
USP4-201ENST00000265560 SBK1Q52WX2 424 aa19.25■□□□□ 0.67
USP4-201ENST00000265560 DACT2Q5SW24 774 aa19.25■□□□□ 0.67
USP4-201ENST00000265560 RASGRP2Q7LDG7 609 aa19.25■□□□□ 0.67
USP4-201ENST00000265560 SLC16A10Q8TF71 515 aa19.25■□□□□ 0.67
USP4-201ENST00000265560 C8orf76Q96K31 380 aa19.25■□□□□ 0.67
USP4-201ENST00000265560 ZBTB12Q9Y330 459 aaPredicted RBP19.25■□□□□ 0.67
USP4-201ENST00000265560 SLC3A2P08195 630 aaKnown RBP19.25■□□□□ 0.67
USP4-201ENST00000265560 RTN1Q16799 776 aa19.25■□□□□ 0.67
USP4-201ENST00000265560 ATP6V1DQ9Y5K8 247 aa19.25■□□□□ 0.67
USP4-201ENST00000265560 GAKO14976 1311 aa19.25■□□□□ 0.67
USP4-201ENST00000265560 C10orf71Q711Q0 1435 aa19.25■□□□□ 0.67
USP4-201ENST00000265560 TIAM2Q8IVF5 1701 aa19.25■□□□□ 0.67
USP4-201ENST00000265560 CRKP46108 304 aa19.25■□□□□ 0.67
USP4-201ENST00000265560 KIAA2012Q0VF49 1180 aa19.25■□□□□ 0.67
USP4-201ENST00000265560 CDC42EP5Q6NZY7 148 aa19.25■□□□□ 0.67
USP4-201ENST00000265560 LARGE2Q8N3Y3 721 aa19.25■□□□□ 0.67
USP4-201ENST00000265560 FAM196BA6NMK8 535 aa19.24■□□□□ 0.67
USP4-201ENST00000265560 IARSP41252 1262 aaKnown RBP19.24■□□□□ 0.67
USP4-201ENST00000265560 RESTQ13127 1097 aa19.24■□□□□ 0.67
USP4-201ENST00000265560 SKOR2Q2VWA4 1001 aaPredicted RBP19.24■□□□□ 0.67
USP4-201ENST00000265560 APOBEC3HQ6NTF7 200 aaKnown RBP19.24■□□□□ 0.67
USP4-201ENST00000265560 TTC6Q86TZ1 520 aa19.24■□□□□ 0.67
USP4-201ENST00000265560 FANCBQ8NB91 859 aa19.24■□□□□ 0.67
USP4-201ENST00000265560 TEKT1Q969V4 418 aa19.24■□□□□ 0.67
USP4-201ENST00000265560 IL17RBQ9NRM6 502 aa19.24■□□□□ 0.67
USP4-201ENST00000265560 CDK5RAP2Q96SN8 1893 aa19.24■□□□□ 0.67
USP4-201ENST00000265560 WDHD1O75717 1129 aaPredicted RBP19.24■□□□□ 0.67
USP4-201ENST00000265560 SLF2Q8IX21 1173 aa19.24■□□□□ 0.67
USP4-201ENST00000265560 ALG1Q9BT22 464 aa19.24■□□□□ 0.67
USP4-201ENST00000265560 TMEM63CQ9P1W3 806 aa19.24■□□□□ 0.67
USP4-201ENST00000265560 FGRP09769 529 aa19.23■□□□□ 0.67
USP4-201ENST00000265560 AMOTL1Q8IY63 956 aa19.23■□□□□ 0.67
USP4-201ENST00000265560 FAM163AQ96GL9 167 aaPredicted RBP19.23■□□□□ 0.67
USP4-201ENST00000265560 STX8Q9UNK0 236 aa19.23■□□□□ 0.67
USP4-201ENST00000265560 GAS2L3Q86XJ1 694 aa19.23■□□□□ 0.67
USP4-201ENST00000265560 PLEKHA8P1O95397 391 aa19.23■□□□□ 0.67
USP4-201ENST00000265560 CCDC93Q567U6 631 aa19.23■□□□□ 0.67
USP4-201ENST00000265560 CLEC10AQ8IUN9 316 aa19.23■□□□□ 0.67
USP4-201ENST00000265560 ZNF444Q8N0Y2 327 aaPredicted RBP19.23■□□□□ 0.67
USP4-201ENST00000265560 KIAA1551Q9HCM1 1747 aa19.22■□□□□ 0.67
USP4-201ENST00000265560 TSPY3P0CV98 308 aa19.22■□□□□ 0.67
USP4-201ENST00000265560 TSPY8P0CW00 308 aa19.22■□□□□ 0.67
USP4-201ENST00000265560 POLD1P28340 1107 aa19.22■□□□□ 0.67
USP4-201ENST00000265560 CDK8P49336 464 aa19.22■□□□□ 0.67
USP4-201ENST00000265560 STRIP1Q5VSL9 837 aa19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms