RNA–Protein interactions for RNA: ENST00000265081.6

MSH3-201, Transcript of mutS homolog 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH3, Length 4,092 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-201ENST00000265081 TNFRSF25Q93038 417 aa12.92□□□□□ -0.34
MSH3-201ENST00000265081 ZNF830Q96NB3 372 aaPredicted RBP12.92□□□□□ -0.34
MSH3-201ENST00000265081 CYP7A1P22680 504 aa12.92□□□□□ -0.34
MSH3-201ENST00000265081 GUCY1A2P33402 732 aa12.92□□□□□ -0.34
MSH3-201ENST00000265081 FOSBP53539 338 aa12.92□□□□□ -0.34
MSH3-201ENST00000265081 WTAPQ15007 396 aa12.92□□□□□ -0.34
MSH3-201ENST00000265081 CTR9Q6PD62 1173 aa12.92□□□□□ -0.34
MSH3-201ENST00000265081 C10orf71Q711Q0 1435 aa12.92□□□□□ -0.34
MSH3-201ENST00000265081 CCDC69A6NI79 296 aa12.92□□□□□ -0.34
MSH3-201ENST00000265081 MICU3Q86XE3 530 aa12.92□□□□□ -0.34
MSH3-201ENST00000265081 ZNF654Q8IZM8 581 aa12.92□□□□□ -0.34
MSH3-201ENST00000265081 MYRIPQ8NFW9 859 aa12.92□□□□□ -0.34
MSH3-201ENST00000265081 OSBPL5Q9H0X9 879 aaPredicted RBP12.92□□□□□ -0.34
MSH3-201ENST00000265081 MYO1BO43795 1136 aa12.91□□□□□ -0.34
MSH3-201ENST00000265081 AEBP2Q6ZN18 517 aaPredicted RBP12.91□□□□□ -0.34
MSH3-201ENST00000265081 FANCBQ8NB91 859 aa12.91□□□□□ -0.34
MSH3-201ENST00000265081 FBXO2Q9UK22 296 aaPredicted RBP12.91□□□□□ -0.34
MSH3-201ENST00000265081 RGPD3A6NKT7 1758 aaPredicted RBP12.91□□□□□ -0.34
MSH3-201ENST00000265081 RGPD4Q7Z3J3 1758 aa12.91□□□□□ -0.34
MSH3-201ENST00000265081 CCDC196A0A1B0GTZ2 297 aa12.91□□□□□ -0.34
MSH3-201ENST00000265081 DDAH1O94760 285 aa12.91□□□□□ -0.34
MSH3-201ENST00000265081 RTN1Q16799 776 aa12.91□□□□□ -0.34
MSH3-201ENST00000265081 CAVIN4Q5BKX8 364 aa12.91□□□□□ -0.34
MSH3-201ENST00000265081 ENAHQ8N8S7 591 aaPredicted RBP12.91□□□□□ -0.34
MSH3-201ENST00000265081 CERKQ8TCT0 537 aa12.91□□□□□ -0.34
MSH3-201ENST00000265081 ANKS1AQ92625 1134 aa12.91□□□□□ -0.34
MSH3-201ENST00000265081 PHF20Q9BVI0 1012 aa12.91□□□□□ -0.34
MSH3-201ENST00000265081 LRP2BPQ9P2M1 347 aa12.91□□□□□ -0.34
MSH3-201ENST00000265081 UBE2Q2LH0YL09 131 aa12.91□□□□□ -0.34
MSH3-201ENST00000265081 DYNC1I1O14576 645 aa12.91□□□□□ -0.34
MSH3-201ENST00000265081 PRPF3O43395 683 aaKnown RBP12.91□□□□□ -0.34
MSH3-201ENST00000265081 TDO2P48775 406 aa12.91□□□□□ -0.34
MSH3-201ENST00000265081 SART3Q15020 963 aaKnown RBP12.91□□□□□ -0.34
MSH3-201ENST00000265081 NPY5RQ15761 445 aa12.91□□□□□ -0.34
MSH3-201ENST00000265081 CCDC144BQ3MJ40 725 aa12.91□□□□□ -0.34
MSH3-201ENST00000265081 RAB11FIP4Q86YS3 637 aa12.91□□□□□ -0.34
MSH3-201ENST00000265081 CCDC144CPQ8IYA2 1237 aa12.91□□□□□ -0.34
MSH3-201ENST00000265081 SPATA20Q8TB22 786 aa12.91□□□□□ -0.34
MSH3-201ENST00000265081 ZSCAN10Q96SZ4 725 aaPredicted RBP12.91□□□□□ -0.34
MSH3-201ENST00000265081 NOL10Q9BSC4 688 aaKnown RBP12.91□□□□□ -0.34
MSH3-201ENST00000265081 NEMFO60524 1076 aa12.9□□□□□ -0.34
MSH3-201ENST00000265081 PPFIA3O75145 1194 aa12.9□□□□□ -0.34
MSH3-201ENST00000265081 RPS8P62241 208 aaKnown RBP12.9□□□□□ -0.34
MSH3-201ENST00000265081 TROAPQ12815 778 aa12.9□□□□□ -0.34
MSH3-201ENST00000265081 SYNE3Q6ZMZ3 975 aa12.9□□□□□ -0.34
MSH3-201ENST00000265081 CEP57L1Q8IYX8 460 aa12.9□□□□□ -0.34
MSH3-201ENST00000265081 JMYQ8N9B5 988 aa12.9□□□□□ -0.34
MSH3-201ENST00000265081 ESR2Q92731 530 aa12.9□□□□□ -0.34
MSH3-201ENST00000265081 NAP1L2Q9ULW6 460 aaPredicted RBP12.9□□□□□ -0.34
MSH3-201ENST00000265081 PTGS1P23219 599 aa12.9□□□□□ -0.34
MSH3-201ENST00000265081 KLRK1P26718 216 aa12.9□□□□□ -0.34
MSH3-201ENST00000265081 NAT10Q9H0A0 1025 aaKnown RBP12.9□□□□□ -0.34
MSH3-201ENST00000265081 TNKSO95271 1327 aa12.9□□□□□ -0.34
MSH3-201ENST00000265081 RXRAP19793 462 aa12.9□□□□□ -0.34
MSH3-201ENST00000265081 PTPREP23469 700 aa12.9□□□□□ -0.34
MSH3-201ENST00000265081 KCNJ6P48051 423 aa12.9□□□□□ -0.34
MSH3-201ENST00000265081 SARSP49591 514 aaKnown RBP12.9□□□□□ -0.34
MSH3-201ENST00000265081 MYL10Q9BUA6 226 aa12.9□□□□□ -0.34
MSH3-201ENST00000265081 ATP8A2Q9NTI2 1148 aa12.9□□□□□ -0.34
MSH3-201ENST00000265081 RBM28Q9NW13 759 aaKnown RBP12.9□□□□□ -0.34
MSH3-201ENST00000265081 IMPACTQ9P2X3 320 aa12.9□□□□□ -0.34
MSH3-201ENST00000265081 DPCR1Q3MIW9 517 aa12.89□□□□□ -0.35
MSH3-201ENST00000265081 MIGA1Q8NAN2 632 aa12.89□□□□□ -0.35
MSH3-201ENST00000265081 MECOMQ03112 1051 aa12.89□□□□□ -0.35
MSH3-201ENST00000265081 RILPL1Q5EBL4 403 aa12.89□□□□□ -0.35
MSH3-201ENST00000265081 SDR42E1Q8WUS8 393 aa12.89□□□□□ -0.35
MSH3-201ENST00000265081 MYH1P12882 1939 aa12.89□□□□□ -0.35
MSH3-201ENST00000265081 CRY2Q49AN0 593 aa12.89□□□□□ -0.35
MSH3-201ENST00000265081 NRBP1Q9UHY1 535 aa12.89□□□□□ -0.35
MSH3-201ENST00000265081 FAM177BA6PVY3 158 aa12.88□□□□□ -0.35
MSH3-201ENST00000265081 CALM1P0DP23 149 aa12.88□□□□□ -0.35
MSH3-201ENST00000265081 CALM2P0DP24 149 aa12.88□□□□□ -0.35
MSH3-201ENST00000265081 CALM3P0DP25 149 aa12.88□□□□□ -0.35
MSH3-201ENST00000265081 METTL16Q86W50 562 aaKnown RBP12.88□□□□□ -0.35
MSH3-201ENST00000265081 LRRC8AQ8IWT6 810 aa12.88□□□□□ -0.35
MSH3-201ENST00000265081 SLC26A6Q9BXS9 759 aa12.88□□□□□ -0.35
MSH3-201ENST00000265081 R3HCC1Q9Y3T6 440 aaKnown RBP12.88□□□□□ -0.35
MSH3-201ENST00000265081 ADRA2BP18089 450 aa12.88□□□□□ -0.35
MSH3-201ENST00000265081 TPRNQ4KMQ1 711 aa12.88□□□□□ -0.35
MSH3-201ENST00000265081 NFXL1Q6ZNB6 911 aa12.88□□□□□ -0.35
MSH3-201ENST00000265081 DCP1AQ9NPI6 582 aaPredicted RBP12.88□□□□□ -0.35
MSH3-201ENST00000265081 CLIP2Q9UDT6 1046 aa12.88□□□□□ -0.35
MSH3-201ENST00000265081 CNTNAP5Q8WYK1 1306 aa12.88□□□□□ -0.35
MSH3-201ENST00000265081 DYNLL1P63167 89 aaKnown RBP12.88□□□□□ -0.35
MSH3-201ENST00000265081 CCDC186Q7Z3E2 898 aa12.88□□□□□ -0.35
MSH3-201ENST00000265081 ARHGEF1Q92888 912 aaKnown RBP12.88□□□□□ -0.35
MSH3-201ENST00000265081 SETDB2Q96T68 719 aa12.88□□□□□ -0.35
MSH3-201ENST00000265081 ARPP21Q9UBL0 812 aaPredicted RBP12.88□□□□□ -0.35
MSH3-201ENST00000265081 SRPRBQ9Y5M8 271 aaKnown RBP12.88□□□□□ -0.35
MSH3-201ENST00000265081 NUTM2BA6NNL0 878 aaPredicted RBP12.88□□□□□ -0.35
MSH3-201ENST00000265081 NUTM2EB1AL46 878 aaPredicted RBP12.88□□□□□ -0.35
MSH3-201ENST00000265081 SMIM22K7EJ46 135 aa12.88□□□□□ -0.35
MSH3-201ENST00000265081 RRP9O43818 475 aaKnown RBP12.88□□□□□ -0.35
MSH3-201ENST00000265081 CCZ1BP86790 482 aa12.88□□□□□ -0.35
MSH3-201ENST00000265081 CCZ1P86791 482 aaPredicted RBP12.88□□□□□ -0.35
MSH3-201ENST00000265081 KRBA2Q6ZNG9 492 aa12.88□□□□□ -0.35
MSH3-201ENST00000265081 NUTM2AQ8IVF1 878 aaPredicted RBP12.88□□□□□ -0.35
MSH3-201ENST00000265081 CACTINQ8WUQ7 758 aaKnown RBP12.88□□□□□ -0.35
MSH3-201ENST00000265081 NLRP3Q96P20 1036 aa12.88□□□□□ -0.35
MSH3-201ENST00000265081 SRP68Q9UHB9 627 aaKnown RBP12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms