RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 KAT14Q9H8E8 782 aa18.65■□□□□ 0.58
CTCF-201ENST00000264010 PKD1L3Q7Z443 1732 aa18.64■□□□□ 0.58
CTCF-201ENST00000264010 PRDM1O75626 825 aa18.64■□□□□ 0.57
CTCF-201ENST00000264010 NTSR2O95665 410 aa18.64■□□□□ 0.57
CTCF-201ENST00000264010 TRAPPC3LQ5T215 181 aa18.64■□□□□ 0.57
CTCF-201ENST00000264010 TMC6Q7Z403 805 aa18.64■□□□□ 0.57
CTCF-201ENST00000264010 PDILTQ8N807 584 aa18.64■□□□□ 0.57
CTCF-201ENST00000264010 SMARCE1Q969G3 411 aa18.64■□□□□ 0.57
CTCF-201ENST00000264010 SIPA1L3O60292 1781 aaPredicted RBP18.64■□□□□ 0.57
CTCF-201ENST00000264010 ARFGEF2Q9Y6D5 1785 aa18.64■□□□□ 0.57
CTCF-201ENST00000264010 CCP110O43303 1012 aa18.64■□□□□ 0.57
CTCF-201ENST00000264010 IFNAR1P17181 557 aa18.64■□□□□ 0.57
CTCF-201ENST00000264010 KCNQ4P56696 695 aa18.64■□□□□ 0.57
CTCF-201ENST00000264010 NLRP12P59046 1061 aa18.64■□□□□ 0.57
CTCF-201ENST00000264010 FAM177A1Q8N128 213 aaPredicted RBP18.64■□□□□ 0.57
CTCF-201ENST00000264010 CCDC24Q8N4L8 307 aa18.64■□□□□ 0.57
CTCF-201ENST00000264010 NOC3LQ8WTT2 800 aaKnown RBP18.64■□□□□ 0.57
CTCF-201ENST00000264010 AIFM3Q96NN9 605 aa18.64■□□□□ 0.57
CTCF-201ENST00000264010 GJB4Q9NTQ9 266 aa18.64■□□□□ 0.57
CTCF-201ENST00000264010 CWC15Q9P013 229 aaKnown RBP18.64■□□□□ 0.57
CTCF-201ENST00000264010 KCNJ14Q9UNX9 436 aa18.64■□□□□ 0.57
CTCF-201ENST00000264010 GSG1L2A8MUP6 293 aa18.64■□□□□ 0.57
CTCF-201ENST00000264010 SEMA3EO15041 775 aa18.64■□□□□ 0.57
CTCF-201ENST00000264010 FMNL1O95466 1100 aaPredicted RBP18.64■□□□□ 0.57
CTCF-201ENST00000264010 NOSTRINQ8IVI9 506 aa18.64■□□□□ 0.57
CTCF-201ENST00000264010 VGLL2Q8N8G2 317 aa18.64■□□□□ 0.57
CTCF-201ENST00000264010 ADAMTS7Q9UKP4 1686 aa18.63■□□□□ 0.57
CTCF-201ENST00000264010 TNKSO95271 1327 aa18.63■□□□□ 0.57
CTCF-201ENST00000264010 H0YHG0 523 aa18.63■□□□□ 0.57
CTCF-201ENST00000264010 STAG1Q8WVM7 1258 aa18.63■□□□□ 0.57
CTCF-201ENST00000264010 MCM9Q9NXL9 1143 aa18.63■□□□□ 0.57
CTCF-201ENST00000264010 KCNH3Q9ULD8 1083 aa18.63■□□□□ 0.57
CTCF-201ENST00000264010 SPATA31A5Q5VU36 1347 aa18.63■□□□□ 0.57
CTCF-201ENST00000264010 SPATA31A7Q8IWB4 1347 aa18.63■□□□□ 0.57
CTCF-201ENST00000264010 KRT2P35908 639 aa18.63■□□□□ 0.57
CTCF-201ENST00000264010 SGMS1Q86VZ5 419 aa18.63■□□□□ 0.57
CTCF-201ENST00000264010 GOLPH3LQ9H4A5 285 aa18.63■□□□□ 0.57
CTCF-201ENST00000264010 LY9Q9HBG7 655 aa18.63■□□□□ 0.57
CTCF-201ENST00000264010 C10orf67Q8IYJ2 551 aa18.63■□□□□ 0.57
CTCF-201ENST00000264010 INCENPQ9NQS7 918 aa18.63■□□□□ 0.57
CTCF-201ENST00000264010 RIC1Q4ADV7 1423 aa18.62■□□□□ 0.57
CTCF-201ENST00000264010 PNPLA7Q6ZV29 1317 aa18.62■□□□□ 0.57
CTCF-201ENST00000264010 SKILP12757 684 aa18.62■□□□□ 0.57
CTCF-201ENST00000264010 BARGINQ6ZT62 677 aa18.62■□□□□ 0.57
CTCF-201ENST00000264010 CCDC47Q96A33 483 aaKnown RBP18.62■□□□□ 0.57
CTCF-201ENST00000264010 AATFQ9NY61 560 aaKnown RBP eCLIP18.62■□□□□ 0.57
CTCF-201ENST00000264010 HPS5Q9UPZ3 1129 aa18.62■□□□□ 0.57
CTCF-201ENST00000264010 LDHBP07195 334 aaKnown RBP18.62■□□□□ 0.57
CTCF-201ENST00000264010 PTPN14Q15678 1187 aa18.62■□□□□ 0.57
CTCF-201ENST00000264010 C11orf57Q6ZUT1 292 aaPredicted RBP18.62■□□□□ 0.57
CTCF-201ENST00000264010 ZNF804AQ7Z570 1209 aa18.62■□□□□ 0.57
CTCF-201ENST00000264010 CABP5Q9NP86 173 aa18.62■□□□□ 0.57
CTCF-201ENST00000264010 USP17L12C9JPN9 530 aa18.62■□□□□ 0.57
CTCF-201ENST00000264010 USP17L21D6R901 530 aa18.62■□□□□ 0.57
CTCF-201ENST00000264010 PPP6R2O75170 966 aa18.62■□□□□ 0.57
CTCF-201ENST00000264010 CCDC150Q8NCX0 1101 aa18.62■□□□□ 0.57
CTCF-201ENST00000264010 ARGLU1Q9NWB6 273 aaPredicted RBP18.62■□□□□ 0.57
CTCF-201ENST00000264010 JAG2Q9Y219 1238 aa18.62■□□□□ 0.57
CTCF-201ENST00000264010 CCDC178Q5BJE1 867 aa18.61■□□□□ 0.57
CTCF-201ENST00000264010 ZSCAN10Q96SZ4 725 aaPredicted RBP18.61■□□□□ 0.57
CTCF-201ENST00000264010 GNL3Q9BVP2 549 aaKnown RBP eCLIP18.61■□□□□ 0.57
CTCF-201ENST00000264010 BTBD18B2RXH4 712 aa18.61■□□□□ 0.57
CTCF-201ENST00000264010 PCP11498 1178 aaKnown RBP18.61■□□□□ 0.57
CTCF-201ENST00000264010 LMOD1P29536 600 aaPredicted RBP18.61■□□□□ 0.57
CTCF-201ENST00000264010 RBM6P78332 1123 aaKnown RBP18.61■□□□□ 0.57
CTCF-201ENST00000264010 FILIP1LQ4L180 1135 aa18.61■□□□□ 0.57
CTCF-201ENST00000264010 MTA3Q9BTC8 594 aa18.61■□□□□ 0.57
CTCF-201ENST00000264010 USP21Q9UK80 565 aa18.61■□□□□ 0.57
CTCF-201ENST00000264010 V9GY48 417 aaPredicted RBP18.61■□□□□ 0.57
CTCF-201ENST00000264010 SLC4A8Q2Y0W8 1093 aa18.61■□□□□ 0.57
CTCF-201ENST00000264010 CNBD1Q8NA66 436 aa18.61■□□□□ 0.57
CTCF-201ENST00000264010 MRFAP1L1Q96HT8 127 aa18.61■□□□□ 0.57
CTCF-201ENST00000264010 IFNKQ9P0W0 207 aa18.61■□□□□ 0.57
CTCF-201ENST00000264010 CDC27P30260 824 aa18.6■□□□□ 0.57
CTCF-201ENST00000264010 ST5P78524 1137 aa18.6■□□□□ 0.57
CTCF-201ENST00000264010 SLF2Q8IX21 1173 aa18.6■□□□□ 0.57
CTCF-201ENST00000264010 MINPP1Q9UNW1 487 aa18.6■□□□□ 0.57
CTCF-201ENST00000264010 KIF2AO00139 706 aaPredicted RBP18.6■□□□□ 0.57
CTCF-201ENST00000264010 FMR1NBQ8N0W7 255 aaPredicted RBP18.6■□□□□ 0.57
CTCF-201ENST00000264010 IGDCC4Q8TDY8 1250 aa18.6■□□□□ 0.57
CTCF-201ENST00000264010 WDR66Q8TBY9 1149 aa18.6■□□□□ 0.57
CTCF-201ENST00000264010 STK36Q9NRP7 1315 aa18.6■□□□□ 0.57
CTCF-201ENST00000264010 RPS6KA4O75676 772 aa18.59■□□□□ 0.57
CTCF-201ENST00000264010 TOP1P11387 765 aaKnown RBP18.59■□□□□ 0.57
CTCF-201ENST00000264010 GNAQP50148 359 aa18.59■□□□□ 0.57
CTCF-201ENST00000264010 UBASH3AP57075 661 aa18.59■□□□□ 0.57
CTCF-201ENST00000264010 DYNLL1P63167 89 aaKnown RBP18.59■□□□□ 0.57
CTCF-201ENST00000264010 SF3B3Q15393 1217 aaKnown RBP18.59■□□□□ 0.57
CTCF-201ENST00000264010 CMTR1Q8N1G2 835 aaKnown RBP18.59■□□□□ 0.57
CTCF-201ENST00000264010 EIF2AK3Q9NZJ5 1116 aaKnown RBP18.59■□□□□ 0.57
CTCF-201ENST00000264010 NARFQ9UHQ1 456 aa18.59■□□□□ 0.57
CTCF-201ENST00000264010 LAMB4A4D0S4 1761 aa18.59■□□□□ 0.57
CTCF-201ENST00000264010 MARCH6O60337 910 aa18.59■□□□□ 0.57
CTCF-201ENST00000264010 HMGB2P26583 209 aaKnown RBP18.59■□□□□ 0.57
CTCF-201ENST00000264010 MYL5Q02045 173 aa18.59■□□□□ 0.57
CTCF-201ENST00000264010 EPB41L4AQ9HCS5 686 aaPredicted RBP18.59■□□□□ 0.57
CTCF-201ENST00000264010 LEKR1Q6ZMV7 388 aa18.58■□□□□ 0.57
CTCF-201ENST00000264010 FOXP1Q9H334 677 aaPredicted RBP18.58■□□□□ 0.57
CTCF-201ENST00000264010 SRP68Q9UHB9 627 aaKnown RBP18.58■□□□□ 0.57
CTCF-201ENST00000264010 ZNF804BA4D1E1 1349 aa18.58■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms