RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 USTQ9Y2C2 406 aa20.91■□□□□ 0.94
SMARCC1-201ENST00000254480 U2AF2P26368 475 aaKnown RBP eCLIP20.91■□□□□ 0.941e-6■■■□□ 17.8
SMARCC1-201ENST00000254480 TFAP4Q01664 338 aa20.91■□□□□ 0.94
SMARCC1-201ENST00000254480 CNGA4Q8IV77 575 aa20.91■□□□□ 0.94
SMARCC1-201ENST00000254480 SGSM2O43147 1006 aa20.91■□□□□ 0.94
SMARCC1-201ENST00000254480 HPDP32754 393 aaPredicted RBP20.91■□□□□ 0.94
SMARCC1-201ENST00000254480 SEL1L2Q5TEA6 688 aa20.91■□□□□ 0.94
SMARCC1-201ENST00000254480 SEC62Q99442 399 aaKnown RBP20.91■□□□□ 0.94
SMARCC1-201ENST00000254480 SH2D4AQ9H788 454 aa20.91■□□□□ 0.94
SMARCC1-201ENST00000254480 SYNRGQ9UMZ2 1314 aa20.91■□□□□ 0.94
SMARCC1-201ENST00000254480 SBNO1A3KN83 1393 aa20.91■□□□□ 0.94
SMARCC1-201ENST00000254480 KBTBD3Q8NAB2 608 aa20.91■□□□□ 0.94
SMARCC1-201ENST00000254480 GTF2IP78347 998 aa20.91■□□□□ 0.94
SMARCC1-201ENST00000254480 HERC4Q5GLZ8 1057 aaPredicted RBP20.91■□□□□ 0.94
SMARCC1-201ENST00000254480 CHL1O00533 1208 aa20.9■□□□□ 0.94
SMARCC1-201ENST00000254480 CLCN1P35523 988 aa20.9■□□□□ 0.94
SMARCC1-201ENST00000254480 CFAP65Q6ZU64 1925 aaKnown RBP20.9■□□□□ 0.94
SMARCC1-201ENST00000254480 PIK3C2GO75747 1445 aa20.9■□□□□ 0.94
SMARCC1-201ENST00000254480 DDX12PQ92771 950 aa20.9■□□□□ 0.94
SMARCC1-201ENST00000254480 CPLX4Q7Z7G2 160 aa20.9■□□□□ 0.94
SMARCC1-201ENST00000254480 SMTNP53814 917 aa20.9■□□□□ 0.94
SMARCC1-201ENST00000254480 MYCT1Q8N699 235 aa20.9■□□□□ 0.94
SMARCC1-201ENST00000254480 LRWD1Q9UFC0 647 aa20.9■□□□□ 0.94
SMARCC1-201ENST00000254480 APBA3O96018 575 aa20.9■□□□□ 0.94
SMARCC1-201ENST00000254480 FRMPD2Q68DX3 1309 aaPredicted RBP20.89■□□□□ 0.94
SMARCC1-201ENST00000254480 TRPC3Q13507 836 aa20.89■□□□□ 0.94
SMARCC1-201ENST00000254480 KRT40Q6A162 431 aa20.89■□□□□ 0.94
SMARCC1-201ENST00000254480 STX10O60499 249 aa20.89■□□□□ 0.94
SMARCC1-201ENST00000254480 ZNF202O95125 648 aa20.89■□□□□ 0.94
SMARCC1-201ENST00000254480 ADCY7P51828 1080 aa20.89■□□□□ 0.94
SMARCC1-201ENST00000254480 VAV2P52735 878 aa20.89■□□□□ 0.94
SMARCC1-201ENST00000254480 FANCCQ00597 558 aa20.89■□□□□ 0.93
SMARCC1-201ENST00000254480 LRMPQ12912 555 aa20.89■□□□□ 0.93
SMARCC1-201ENST00000254480 CALCOCO2Q13137 446 aa20.89■□□□□ 0.93
SMARCC1-201ENST00000254480 CNNM4Q6P4Q7 775 aa20.89■□□□□ 0.93
SMARCC1-201ENST00000254480 MICALL1Q8N3F8 863 aa20.89■□□□□ 0.93
SMARCC1-201ENST00000254480 KRT19P08727 400 aa20.89■□□□□ 0.93
SMARCC1-201ENST00000254480 MSANTD4Q8NCY6 345 aa20.89■□□□□ 0.93
SMARCC1-201ENST00000254480 SDR42E1Q8WUS8 393 aa20.89■□□□□ 0.93
SMARCC1-201ENST00000254480 GYG1P46976 350 aa20.89■□□□□ 0.93
SMARCC1-201ENST00000254480 EVCP57679 992 aa20.89■□□□□ 0.93
SMARCC1-201ENST00000254480 STRN3Q13033 797 aa20.89■□□□□ 0.93
SMARCC1-201ENST00000254480 GCNT3O95395 438 aa20.88■□□□□ 0.93
SMARCC1-201ENST00000254480 PPP2R3AQ06190 1150 aa20.88■□□□□ 0.93
SMARCC1-201ENST00000254480 WDR66Q8TBY9 1149 aa20.88■□□□□ 0.93
SMARCC1-201ENST00000254480 ERCC5P28715 1186 aaPredicted RBP20.88■□□□□ 0.93
SMARCC1-201ENST00000254480 SCNN1DP51172 638 aa20.88■□□□□ 0.93
SMARCC1-201ENST00000254480 EAPPQ56P03 285 aaPredicted RBP20.88■□□□□ 0.93
SMARCC1-201ENST00000254480 GTPBP4Q9BZE4 634 aaKnown RBP20.88■□□□□ 0.93
SMARCC1-201ENST00000254480 IFT74Q96LB3 600 aa20.88■□□□□ 0.93
SMARCC1-201ENST00000254480 CBX8Q9HC52 389 aa20.88■□□□□ 0.93
SMARCC1-201ENST00000254480 ASIC2Q16515 512 aa20.88■□□□□ 0.93
SMARCC1-201ENST00000254480 TRIM6Q9C030 488 aaPredicted RBP20.88■□□□□ 0.93
SMARCC1-201ENST00000254480 CCDC160A6NGH7 325 aa20.88■□□□□ 0.93
SMARCC1-201ENST00000254480 PAK1Q13153 545 aa20.88■□□□□ 0.93
SMARCC1-201ENST00000254480 E7EWF7 191 aa20.87■□□□□ 0.93
SMARCC1-201ENST00000254480 CALCRLQ16602 461 aa20.87■□□□□ 0.93
SMARCC1-201ENST00000254480 DOK7Q18PE1 504 aa20.87■□□□□ 0.93
SMARCC1-201ENST00000254480 USP21Q9UK80 565 aa20.87■□□□□ 0.93
SMARCC1-201ENST00000254480 ARID4AP29374 1257 aaPredicted RBP20.87■□□□□ 0.93
SMARCC1-201ENST00000254480 TNNC1P63316 161 aa20.87■□□□□ 0.93
SMARCC1-201ENST00000254480 TTLL7Q6ZT98 887 aa20.87■□□□□ 0.93
SMARCC1-201ENST00000254480 MTRF1LQ9UGC7 380 aaKnown RBP20.87■□□□□ 0.93
SMARCC1-201ENST00000254480 MTUS1Q9ULD2 1270 aa20.87■□□□□ 0.93
SMARCC1-201ENST00000254480 GPHNQ9NQX3 736 aaPredicted RBP20.87■□□□□ 0.93
SMARCC1-201ENST00000254480 TBX22Q9Y458 520 aa20.87■□□□□ 0.93
SMARCC1-201ENST00000254480 EIF2AK4Q9P2K8 1649 aaKnown RBP20.87■□□□□ 0.93
SMARCC1-201ENST00000254480 E7EVH7 732 aa20.87■□□□□ 0.93
SMARCC1-201ENST00000254480 EIF4A1P60842 406 aaKnown RBP20.87■□□□□ 0.93
SMARCC1-201ENST00000254480 PTPROQ16827 1216 aa20.87■□□□□ 0.93
SMARCC1-201ENST00000254480 PNOCQ13519 176 aa20.87■□□□□ 0.93
SMARCC1-201ENST00000254480 NONOQ15233 471 aaKnown RBP eCLIP20.87■□□□□ 0.93
SMARCC1-201ENST00000254480 HAUS3Q68CZ6 603 aa20.87■□□□□ 0.93
SMARCC1-201ENST00000254480 IVNS1ABPQ9Y6Y0 642 aa20.86■□□□□ 0.93
SMARCC1-201ENST00000254480 INF2Q27J81 1249 aa20.86■□□□□ 0.93
SMARCC1-201ENST00000254480 CFAP58Q5T655 872 aa20.86■□□□□ 0.93
SMARCC1-201ENST00000254480 TPH2Q8IWU9 490 aa20.86■□□□□ 0.93
SMARCC1-201ENST00000254480 USP40Q9NVE5 1235 aa20.86■□□□□ 0.93
SMARCC1-201ENST00000254480 BIVM-ERCC5R4GMW8 1640 aa20.86■□□□□ 0.93
SMARCC1-201ENST00000254480 GOLGA8HP0CJ92 632 aa20.86■□□□□ 0.93
SMARCC1-201ENST00000254480 PPP2R5CQ13362 524 aa20.86■□□□□ 0.93
SMARCC1-201ENST00000254480 CEP57Q86XR8 500 aa20.86■□□□□ 0.93
SMARCC1-201ENST00000254480 JAKMIP2Q96AA8 810 aa20.86■□□□□ 0.93
SMARCC1-201ENST00000254480 SMC6Q96SB8 1091 aa20.86■□□□□ 0.93
SMARCC1-201ENST00000254480 MRPL44Q9H9J2 332 aaKnown RBP20.86■□□□□ 0.93
SMARCC1-201ENST00000254480 EIF4G3O43432 1585 aaKnown RBP20.86■□□□□ 0.93
SMARCC1-201ENST00000254480 NEURL1BA8MQ27 555 aa20.85■□□□□ 0.93
SMARCC1-201ENST00000254480 CCDC121Q6ZUS5 278 aa20.85■□□□□ 0.93
SMARCC1-201ENST00000254480 PPIP5K2O43314 1243 aa20.85■□□□□ 0.93
SMARCC1-201ENST00000254480 BCAMP50895 628 aa20.85■□□□□ 0.93
SMARCC1-201ENST00000254480 ANKS4BQ8N8V4 417 aa20.85■□□□□ 0.93
SMARCC1-201ENST00000254480 KIFAP3Q92845 792 aa20.85■□□□□ 0.93
SMARCC1-201ENST00000254480 CALUO43852 315 aaPredicted RBP20.85■□□□□ 0.93
SMARCC1-201ENST00000254480 ARHGAP44Q17R89 818 aa20.85■□□□□ 0.93
SMARCC1-201ENST00000254480 TTF2Q9UNY4 1162 aaKnown RBP20.85■□□□□ 0.93
SMARCC1-201ENST00000254480 CETN3O15182 167 aa20.85■□□□□ 0.93
SMARCC1-201ENST00000254480 CLSTN2Q9H4D0 955 aa20.85■□□□□ 0.93
SMARCC1-201ENST00000254480 MYO1AQ9UBC5 1043 aa20.85■□□□□ 0.93
SMARCC1-201ENST00000254480 USP17L12C9JPN9 530 aa20.85■□□□□ 0.93
SMARCC1-201ENST00000254480 USP17L21D6R901 530 aa20.85■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms