RNA–Protein interactions for RNA: ENST00000254066.9

RARA-201, Transcript of retinoic acid receptor alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RARA, Length 2,414 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RARA-201ENST00000254066 CDHR2Q9BYE9 1310 aa23.23■■□□□ 1.31
RARA-201ENST00000254066 SOWAHDA6NJG2 315 aa23.22■■□□□ 1.31
RARA-201ENST00000254066 DDX58O95786 925 aaKnown RBP23.22■■□□□ 1.31
RARA-201ENST00000254066 HOXC9P31274 260 aa23.22■■□□□ 1.31
RARA-201ENST00000254066 RAD9BQ6WBX8 426 aa23.22■■□□□ 1.31
RARA-201ENST00000254066 SMARCC1Q92922 1105 aaPredicted RBP23.22■■□□□ 1.31
RARA-201ENST00000254066 MTF1Q14872 753 aa23.22■■□□□ 1.31
RARA-201ENST00000254066 SETQ01105 290 aaPredicted RBP23.21■■□□□ 1.31
RARA-201ENST00000254066 PDE4BQ07343 736 aa23.21■■□□□ 1.31
RARA-201ENST00000254066 PTPAQ15257 358 aa23.21■■□□□ 1.31
RARA-201ENST00000254066 PPFIBP1Q86W92 1011 aa23.21■■□□□ 1.31
RARA-201ENST00000254066 FOXP4Q8IVH2 680 aaPredicted RBP23.21■■□□□ 1.31
RARA-201ENST00000254066 HPCAL4Q9UM19 191 aa23.21■■□□□ 1.31
RARA-201ENST00000254066 KDM6AO15550 1401 aaPredicted RBP23.21■■□□□ 1.31
RARA-201ENST00000254066 TARSL2A2RTX5 802 aaKnown RBP23.21■■□□□ 1.31
RARA-201ENST00000254066 HNRNPH1P31943 449 aaKnown RBP23.21■■□□□ 1.31
RARA-201ENST00000254066 MDM2Q00987 491 aaPredicted RBP23.21■■□□□ 1.31
RARA-201ENST00000254066 OTUD7BQ6GQQ9 843 aa23.21■■□□□ 1.31
RARA-201ENST00000254066 A6NNZ2 444 aa23.2■■□□□ 1.3
RARA-201ENST00000254066 KIF28PB7ZC32 967 aa23.2■■□□□ 1.3
RARA-201ENST00000254066 ANXA1P04083 346 aa23.2■■□□□ 1.3
RARA-201ENST00000254066 BMP6P22004 513 aa23.2■■□□□ 1.3
RARA-201ENST00000254066 TUBB8Q3ZCM7 444 aa23.2■■□□□ 1.3
RARA-201ENST00000254066 GBP6Q6ZN66 633 aa23.2■■□□□ 1.3
RARA-201ENST00000254066 SLC35F6Q8N357 371 aa23.2■■□□□ 1.3
RARA-201ENST00000254066 ANKRD65E5RJM6 399 aa23.2■■□□□ 1.3
RARA-201ENST00000254066 ERCC5P28715 1186 aaPredicted RBP23.2■■□□□ 1.3
RARA-201ENST00000254066 MARCKSP29966 332 aaPredicted RBP23.2■■□□□ 1.3
RARA-201ENST00000254066 STAG1Q8WVM7 1258 aa23.2■■□□□ 1.3
RARA-201ENST00000254066 AFF2P51816 1311 aa23.19■■□□□ 1.3
RARA-201ENST00000254066 IGSF22Q8N9C0 903 aa23.19■■□□□ 1.3
RARA-201ENST00000254066 COG1Q8WTW3 980 aa23.19■■□□□ 1.3
RARA-201ENST00000254066 RPGRIP1Q96KN7 1286 aa23.19■■□□□ 1.3
RARA-201ENST00000254066 KCNH3Q9ULD8 1083 aa23.19■■□□□ 1.3
RARA-201ENST00000254066 FAM169AQ9Y6X4 670 aa23.19■■□□□ 1.3
RARA-201ENST00000254066 MNAT1P51948 309 aa23.19■■□□□ 1.3
RARA-201ENST00000254066 USP14P54578 494 aa23.19■■□□□ 1.3
RARA-201ENST00000254066 AMPD2Q01433 879 aa23.19■■□□□ 1.3
RARA-201ENST00000254066 PTPN21Q16825 1174 aa23.19■■□□□ 1.3
RARA-201ENST00000254066 LONRF3Q496Y0 759 aa23.19■■□□□ 1.3
RARA-201ENST00000254066 CNGA4Q8IV77 575 aa23.19■■□□□ 1.3
RARA-201ENST00000254066 KAT2BQ92831 832 aa23.19■■□□□ 1.3
RARA-201ENST00000254066 MYO6Q9UM54 1294 aa23.19■■□□□ 1.3
RARA-201ENST00000254066 ZC3H4Q9UPT8 1303 aaKnown RBP23.18■■□□□ 1.3
RARA-201ENST00000254066 SARSP49591 514 aaKnown RBP23.18■■□□□ 1.3
RARA-201ENST00000254066 STIM1Q13586 685 aa23.18■■□□□ 1.3
RARA-201ENST00000254066 ZMYM1Q5SVZ6 1142 aa23.18■■□□□ 1.3
RARA-201ENST00000254066 MAN1B1Q9UKM7 699 aa23.18■■□□□ 1.3
RARA-201ENST00000254066 PHF8Q9UPP1 1060 aa23.18■■□□□ 1.3
RARA-201ENST00000254066 CDC27P30260 824 aa23.18■■□□□ 1.3
RARA-201ENST00000254066 TRDNQ13061 729 aa23.18■■□□□ 1.3
RARA-201ENST00000254066 FAM76AQ8TAV0 307 aa23.18■■□□□ 1.3
RARA-201ENST00000254066 HEG1Q9ULI3 1381 aa23.17■■□□□ 1.3
RARA-201ENST00000254066 HSPD1P10809 573 aaKnown RBP23.17■■□□□ 1.3
RARA-201ENST00000254066 PBX1P40424 430 aa23.17■■□□□ 1.3
RARA-201ENST00000254066 DDR1Q08345 913 aa23.17■■□□□ 1.3
RARA-201ENST00000254066 PPFIA1Q13136 1202 aa23.17■■□□□ 1.3
RARA-201ENST00000254066 TMTC1Q8IUR5 882 aa23.17■■□□□ 1.3
RARA-201ENST00000254066 TEX13AQ9BXU3 409 aaPredicted RBP23.17■■□□□ 1.3
RARA-201ENST00000254066 PIK3C2AO00443 1686 aa23.17■■□□□ 1.3
RARA-201ENST00000254066 USP54Q70EL1 1684 aa23.17■■□□□ 1.3
RARA-201ENST00000254066 WDR19Q8NEZ3 1342 aa23.17■■□□□ 1.3
RARA-201ENST00000254066 BTBD11A6QL63 1104 aa23.17■■□□□ 1.3
RARA-201ENST00000254066 MORC3Q14149 939 aa23.17■■□□□ 1.3
RARA-201ENST00000254066 SPATS2Q86XZ4 545 aaKnown RBP23.17■■□□□ 1.3
RARA-201ENST00000254066 CTAGE1Q96RT6 745 aa23.17■■□□□ 1.3
RARA-201ENST00000254066 MAP3K14Q99558 947 aa23.17■■□□□ 1.3
RARA-201ENST00000254066 LMO7Q8WWI1 1683 aa23.16■■□□□ 1.3
RARA-201ENST00000254066 CPLX1O14810 134 aa23.16■■□□□ 1.3
RARA-201ENST00000254066 MFAP3LO75121 409 aa23.16■■□□□ 1.3
RARA-201ENST00000254066 IRAK1P51617 712 aa23.16■■□□□ 1.3
RARA-201ENST00000254066 TTLL5Q6EMB2 1281 aa23.16■■□□□ 1.3
RARA-201ENST00000254066 C8orf37Q96NL8 207 aa23.16■■□□□ 1.3
RARA-201ENST00000254066 SH3BP1Q9Y3L3 701 aa23.16■■□□□ 1.3
RARA-201ENST00000254066 ITIH6Q6UXX5 1313 aa23.16■■□□□ 1.3
RARA-201ENST00000254066 SEMA3EO15041 775 aa23.16■■□□□ 1.3
RARA-201ENST00000254066 RXRBP28702 533 aa23.16■■□□□ 1.3
RARA-201ENST00000254066 FMR1Q06787 632 aaKnown RBP eCLIP23.16■■□□□ 1.3
RARA-201ENST00000254066 PRPF38AQ8NAV1 312 aaKnown RBP23.16■■□□□ 1.3
RARA-201ENST00000254066 NOA1Q8NC60 698 aaKnown RBP23.16■■□□□ 1.3
RARA-201ENST00000254066 PLEKHA4Q9H4M7 779 aa23.16■■□□□ 1.3
RARA-201ENST00000254066 SHTN1A0MZ66 631 aa23.15■■□□□ 1.3
RARA-201ENST00000254066 RBL2Q08999 1139 aa23.15■■□□□ 1.3
RARA-201ENST00000254066 POSTNQ15063 836 aa23.15■■□□□ 1.3
RARA-201ENST00000254066 EP400NLQ6ZTU2 488 aa23.15■■□□□ 1.3
RARA-201ENST00000254066 WWC3Q9ULE0 1092 aa23.15■■□□□ 1.3
RARA-201ENST00000254066 HPS5Q9UPZ3 1129 aa23.15■■□□□ 1.3
RARA-201ENST00000254066 OVOS2A0A0G2JMS6 1433 aa23.15■■□□□ 1.3
RARA-201ENST00000254066 INPP5BP32019 993 aa23.14■■□□□ 1.3
RARA-201ENST00000254066 LIG3P49916 1009 aa23.14■■□□□ 1.3
RARA-201ENST00000254066 PLCD1P51178 756 aa23.14■■□□□ 1.3
RARA-201ENST00000254066 KANK3Q6NY19 840 aa23.14■■□□□ 1.3
RARA-201ENST00000254066 SPATA31A3Q5VYP0 1347 aa23.14■■□□□ 1.3
RARA-201ENST00000254066 KCNQ3O43525 872 aa23.14■■□□□ 1.29
RARA-201ENST00000254066 PPFIA3O75145 1194 aa23.14■■□□□ 1.29
RARA-201ENST00000254066 CCT5P48643 541 aa23.14■■□□□ 1.29
RARA-201ENST00000254066 KCNV1Q6PIU1 500 aa23.14■■□□□ 1.29
RARA-201ENST00000254066 DDX46Q7L014 1031 aaKnown RBP23.14■■□□□ 1.29
RARA-201ENST00000254066 KRT28Q7Z3Y7 464 aa23.14■■□□□ 1.29
RARA-201ENST00000254066 CRACR2AQ9BSW2 395 aa23.14■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms