RNA–Protein interactions for RNA: ENST00000217402.2

CHMP4B-201, Transcript of charged multivesicular body protein 4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4B, Length 1,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4B-201ENST00000217402 CRACR2BQ8N4Y2 399 aaPredicted RBP32.4■■■□□ 2.78
CHMP4B-201ENST00000217402 NBPF3Q9H094 633 aa32.4■■■□□ 2.78
CHMP4B-201ENST00000217402 SERPINB13Q9UIV8 391 aa32.4■■■□□ 2.78
CHMP4B-201ENST00000217402 SIPA1L1O43166 1804 aa32.4■■■□□ 2.78
CHMP4B-201ENST00000217402 LAMA4Q16363 1823 aa32.39■■■□□ 2.78
CHMP4B-201ENST00000217402 SLC27A2O14975 620 aa32.39■■■□□ 2.78
CHMP4B-201ENST00000217402 EPB41L2O43491 1005 aaKnown RBP32.39■■■□□ 2.78
CHMP4B-201ENST00000217402 TRIM34Q9BYJ4 488 aa32.39■■■□□ 2.78
CHMP4B-201ENST00000217402 TAF6LQ9Y6J9 622 aa32.39■■■□□ 2.78
CHMP4B-201ENST00000217402 FMR1Q06787 632 aaKnown RBP eCLIP32.38■■■□□ 2.77
CHMP4B-201ENST00000217402 MIGA2Q7L4E1 593 aa32.38■■■□□ 2.77
CHMP4B-201ENST00000217402 TBC1D10CQ8IV04 446 aa32.38■■■□□ 2.77
CHMP4B-201ENST00000217402 SLC44A5Q8NCS7 719 aa32.38■■■□□ 2.77
CHMP4B-201ENST00000217402 ROBO3Q96MS0 1386 aa32.38■■■□□ 2.77
CHMP4B-201ENST00000217402 SSC5DA1L4H1 1573 aa32.37■■■□□ 2.77
CHMP4B-201ENST00000217402 HSPA4P34932 840 aa32.37■■■□□ 2.77
CHMP4B-201ENST00000217402 EHD4Q9H223 541 aa32.37■■■□□ 2.77
CHMP4B-201ENST00000217402 ANAPC4Q9UJX5 808 aa32.37■■■□□ 2.77
CHMP4B-201ENST00000217402 MCCP23508 829 aa32.37■■■□□ 2.77
CHMP4B-201ENST00000217402 SUPT20HL1Q3ZLR7 823 aa32.37■■■□□ 2.77
CHMP4B-201ENST00000217402 RNF20Q5VTR2 975 aa32.37■■■□□ 2.77
CHMP4B-201ENST00000217402 UPF2Q9HAU5 1272 aaKnown RBP32.37■■■□□ 2.77
CHMP4B-201ENST00000217402 SLC3A2P08195 630 aaKnown RBP32.36■■■□□ 2.77
CHMP4B-201ENST00000217402 DNAJC18Q9H819 358 aa32.36■■■□□ 2.77
CHMP4B-201ENST00000217402 FOXP4Q8IVH2 680 aaPredicted RBP32.35■■■□□ 2.77
CHMP4B-201ENST00000217402 XPO5Q9HAV4 1204 aaKnown RBP eCLIP32.35■■■□□ 2.77
CHMP4B-201ENST00000217402 INCENPQ9NQS7 918 aa32.35■■■□□ 2.77
CHMP4B-201ENST00000217402 GABPAQ06546 454 aa32.34■■■□□ 2.77
CHMP4B-201ENST00000217402 C16orf86Q6ZW13 317 aa32.34■■■□□ 2.77
CHMP4B-201ENST00000217402 HOOK2Q96ED9 719 aa32.34■■■□□ 2.77
CHMP4B-201ENST00000217402 ZNF408Q9H9D4 720 aa32.34■■■□□ 2.77
CHMP4B-201ENST00000217402 HERC5Q9UII4 1024 aaKnown RBP32.34■■■□□ 2.77
CHMP4B-201ENST00000217402 FZD1Q9UP38 647 aa32.34■■■□□ 2.77
CHMP4B-201ENST00000217402 TACC3Q9Y6A5 838 aa32.34■■■□□ 2.77
CHMP4B-201ENST00000217402 PRDM1O75626 825 aa32.33■■■□□ 2.77
CHMP4B-201ENST00000217402 TOMM70O94826 608 aa32.33■■■□□ 2.77
CHMP4B-201ENST00000217402 PRKG1Q13976 671 aa32.33■■■□□ 2.77
CHMP4B-201ENST00000217402 RASEFQ8IZ41 740 aa32.33■■■□□ 2.77
CHMP4B-201ENST00000217402 SMC1BQ8NDV3 1235 aa32.33■■■□□ 2.77
CHMP4B-201ENST00000217402 ITGBL1O95965 494 aaPredicted RBP32.33■■■□□ 2.77
CHMP4B-201ENST00000217402 NF2P35240 595 aa32.33■■■□□ 2.77
CHMP4B-201ENST00000217402 CDK8P49336 464 aa32.33■■■□□ 2.77
CHMP4B-201ENST00000217402 AKNAD1Q5T1N1 836 aa32.33■■■□□ 2.77
CHMP4B-201ENST00000217402 ZKSCAN1P17029 563 aaPredicted RBP32.32■■■□□ 2.76
CHMP4B-201ENST00000217402 PDE4BQ07343 736 aa32.32■■■□□ 2.76
CHMP4B-201ENST00000217402 DCAF15Q66K64 600 aa32.32■■■□□ 2.76
CHMP4B-201ENST00000217402 METTL16Q86W50 562 aaKnown RBP32.32■■■□□ 2.76
CHMP4B-201ENST00000217402 STAG1Q8WVM7 1258 aa32.32■■■□□ 2.76
CHMP4B-201ENST00000217402 TOMM22Q9NS69 142 aa32.32■■■□□ 2.76
CHMP4B-201ENST00000217402 MFSD6Q6ZSS7 791 aa32.31■■■□□ 2.76
CHMP4B-201ENST00000217402 RBM46Q8TBY0 533 aaKnown RBP32.31■■■□□ 2.76
CHMP4B-201ENST00000217402 SWAP70Q9UH65 585 aa32.31■■■□□ 2.76
CHMP4B-201ENST00000217402 NEDD4P46934 1319 aa32.31■■■□□ 2.76
CHMP4B-201ENST00000217402 TBC1D12O60347 775 aa32.3■■■□□ 2.76
CHMP4B-201ENST00000217402 SHMT1P34896 483 aa32.3■■■□□ 2.76
CHMP4B-201ENST00000217402 RRP12Q5JTH9 1297 aaKnown RBP32.3■■■□□ 2.76
CHMP4B-201ENST00000217402 STOX1Q6ZVD7 989 aa32.3■■■□□ 2.76
CHMP4B-201ENST00000217402 C22orf23Q9BZE7 217 aa32.3■■■□□ 2.76
CHMP4B-201ENST00000217402 RNF41Q9H4P4 317 aaPredicted RBP32.3■■■□□ 2.76
CHMP4B-201ENST00000217402 MKNK2Q9HBH9 465 aa32.3■■■□□ 2.76
CHMP4B-201ENST00000217402 SNX14Q9Y5W7 946 aa32.3■■■□□ 2.76
CHMP4B-201ENST00000217402 E7EWF7 191 aa32.29■■■□□ 2.76
CHMP4B-201ENST00000217402 DDX52Q9Y2R4 599 aaKnown RBP eCLIP32.29■■■□□ 2.76
CHMP4B-201ENST00000217402 KCNB2Q92953 911 aa32.29■■■□□ 2.76
CHMP4B-201ENST00000217402 ZNF287Q9HBT7 754 aa32.29■■■□□ 2.76
CHMP4B-201ENST00000217402 MAP3K10Q02779 954 aa32.28■■■□□ 2.76
CHMP4B-201ENST00000217402 ZNF341Q9BYN7 854 aa32.28■■■□□ 2.76
CHMP4B-201ENST00000217402 TTLL12Q14166 644 aaPredicted RBP32.27■■■□□ 2.76
CHMP4B-201ENST00000217402 PPP1R12BO60237 982 aaPredicted RBP32.26■■■□□ 2.76
CHMP4B-201ENST00000217402 CELF2O95319 508 aaKnown RBP32.26■■■□□ 2.76
CHMP4B-201ENST00000217402 FGRP09769 529 aa32.26■■■□□ 2.75
CHMP4B-201ENST00000217402 RASA1P20936 1047 aa32.26■■■□□ 2.75
CHMP4B-201ENST00000217402 ADCK5Q3MIX3 580 aa32.26■■■□□ 2.75
CHMP4B-201ENST00000217402 TATDN1Q6P1N9 297 aa32.26■■■□□ 2.75
CHMP4B-201ENST00000217402 ORC4O43929 436 aa32.25■■■□□ 2.75
CHMP4B-201ENST00000217402 PCP11498 1178 aaKnown RBP32.25■■■□□ 2.75
CHMP4B-201ENST00000217402 TRDNQ13061 729 aa32.25■■■□□ 2.75
CHMP4B-201ENST00000217402 RRP1BQ14684 758 aaKnown RBP32.25■■■□□ 2.75
CHMP4B-201ENST00000217402 MOB2Q70IA6 237 aa32.25■■■□□ 2.75
CHMP4B-201ENST00000217402 WRNIP1Q96S55 665 aa32.25■■■□□ 2.75
CHMP4B-201ENST00000217402 TAOK2Q9UL54 1235 aa32.25■■■□□ 2.75
CHMP4B-201ENST00000217402 ANGEL1Q9UNK9 670 aaKnown RBP32.25■■■□□ 2.75
CHMP4B-201ENST00000217402 B4E1Z4 1266 aa32.24■■■□□ 2.75
CHMP4B-201ENST00000217402 RANBP6O60518 1105 aaKnown RBP32.24■■■□□ 2.75
CHMP4B-201ENST00000217402 USP2O75604 605 aaPredicted RBP32.24■■■□□ 2.75
CHMP4B-201ENST00000217402 GDF11O95390 407 aa32.24■■■□□ 2.75
CHMP4B-201ENST00000217402 TSGA10IPQ3SY00 556 aa32.24■■■□□ 2.75
CHMP4B-201ENST00000217402 CERKLQ49MI3 558 aaPredicted RBP32.24■■■□□ 2.75
CHMP4B-201ENST00000217402 RALYLQ86SE5 291 aaKnown RBP32.24■■■□□ 2.75
CHMP4B-201ENST00000217402 ZNF444Q8N0Y2 327 aaPredicted RBP32.24■■■□□ 2.75
CHMP4B-201ENST00000217402 NKX2-3Q8TAU0 364 aa32.24■■■□□ 2.75
CHMP4B-201ENST00000217402 CNNM2Q9H8M5 875 aa32.24■■■□□ 2.75
CHMP4B-201ENST00000217402 PHF20L1A8MW92 1017 aa32.23■■■□□ 2.75
CHMP4B-201ENST00000217402 KRT32Q14532 448 aa32.23■■■□□ 2.75
CHMP4B-201ENST00000217402 SHROOM1Q2M3G4 852 aaPredicted RBP32.23■■■□□ 2.75
CHMP4B-201ENST00000217402 FAM47AQ5JRC9 791 aa32.23■■■□□ 2.75
CHMP4B-201ENST00000217402 PASKQ96RG2 1323 aa32.23■■■□□ 2.75
CHMP4B-201ENST00000217402 MYH8P13535 1937 aa32.23■■■□□ 2.75
CHMP4B-201ENST00000217402 NCOA7Q8NI08 942 aa32.22■■■□□ 2.75
CHMP4B-201ENST00000217402 KLRG1Q96E93 195 aa32.22■■■□□ 2.75
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms