RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 GCKRQ14397 625 aa15.14■□□□□ 0.01
SF3A1-201ENST00000215793 NBPF14Q5TI25 921 aa15.14■□□□□ 0.01
SF3A1-201ENST00000215793 BTG4Q9NY30 223 aa15.14■□□□□ 0.01
SF3A1-201ENST00000215793 ARHGEF35A5YM69 484 aa15.14■□□□□ 0.01
SF3A1-201ENST00000215793 CA8P35219 290 aa15.14■□□□□ 0.01
SF3A1-201ENST00000215793 NLRP12P59046 1061 aa15.14■□□□□ 0.01
SF3A1-201ENST00000215793 LIN9Q5TKA1 542 aa15.14■□□□□ 0.01
SF3A1-201ENST00000215793 CCDC84Q86UT8 332 aaPredicted RBP15.14■□□□□ 0.01
SF3A1-201ENST00000215793 ZNF75DP51815 510 aa15.14■□□□□ 0.01
SF3A1-201ENST00000215793 CFAP157Q5JU67 520 aa15.14■□□□□ 0.01
SF3A1-201ENST00000215793 UBL4BQ8N7F7 174 aa15.14■□□□□ 0.01
SF3A1-201ENST00000215793 KLHDC4Q8TBB5 520 aa15.14■□□□□ 0.01
SF3A1-201ENST00000215793 SLC52A2Q9HAB3 445 aa15.14■□□□□ 0.01
SF3A1-201ENST00000215793 NFE2L3Q9Y4A8 694 aa15.14■□□□□ 0.01
SF3A1-201ENST00000215793 SHANK2Q9UPX8 1470 aa15.14■□□□□ 0.01
SF3A1-201ENST00000215793 ASIC2Q16515 512 aa15.14■□□□□ 0.01
SF3A1-201ENST00000215793 KRT40Q6A162 431 aa15.14■□□□□ 0.01
SF3A1-201ENST00000215793 CCDC169A6NNP5 214 aa15.13■□□□□ 0.01
SF3A1-201ENST00000215793 PRDM1O75626 825 aa15.13■□□□□ 0.01
SF3A1-201ENST00000215793 GAS8O95995 478 aa15.13■□□□□ 0.01
SF3A1-201ENST00000215793 ARID4AP29374 1257 aaPredicted RBP15.13■□□□□ 0.01
SF3A1-201ENST00000215793 PSMC4P43686 418 aa15.13■□□□□ 0.01
SF3A1-201ENST00000215793 SNX16P57768 344 aa15.13■□□□□ 0.01
SF3A1-201ENST00000215793 ZNF365Q70YC5 407 aa15.13■□□□□ 0.01
SF3A1-201ENST00000215793 FAM173BQ6P4H8 233 aa15.13■□□□□ 0.01
SF3A1-201ENST00000215793 CBX8Q9HC52 389 aa15.13■□□□□ 0.01
SF3A1-201ENST00000215793 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.13■□□□□ 0.01
SF3A1-201ENST00000215793 USP19O94966 1318 aa15.13■□□□□ 0.01
SF3A1-201ENST00000215793 HERC4Q5GLZ8 1057 aaPredicted RBP15.13■□□□□ 0.01
SF3A1-201ENST00000215793 CEP57Q86XR8 500 aa15.13■□□□□ 0.01
SF3A1-201ENST00000215793 SNX29Q8TEQ0 813 aa15.13■□□□□ 0.01
SF3A1-201ENST00000215793 SECISBP2LQ93073 1101 aaKnown RBP15.13■□□□□ 0.01
SF3A1-201ENST00000215793 SUCLG2Q96I99 432 aa15.13■□□□□ 0.01
SF3A1-201ENST00000215793 FAM204AQ9H8W3 233 aa15.13■□□□□ 0.01
SF3A1-201ENST00000215793 TRIM35Q9UPQ4 493 aa15.13■□□□□ 0.01
SF3A1-201ENST00000215793 MROH5Q6ZUA9 1318 aa15.13■□□□□ 0.01
SF3A1-201ENST00000215793 KRT9P35527 623 aa15.13■□□□□ 0.01
SF3A1-201ENST00000215793 ADCY7P51828 1080 aa15.13■□□□□ 0.01
SF3A1-201ENST00000215793 CLUL1Q15846 466 aa15.13■□□□□ 0.01
SF3A1-201ENST00000215793 TTC16Q8NEE8 873 aa15.13■□□□□ 0.01
SF3A1-201ENST00000215793 AGTPBP1Q9UPW5 1226 aa15.13■□□□□ 0.01
SF3A1-201ENST00000215793 NCKAP5LQ9HCH0 1330 aa15.12■□□□□ 0.01
SF3A1-201ENST00000215793 DSCC1Q9BVC3 393 aa15.12■□□□□ 0.01
SF3A1-201ENST00000215793 SLC1A4P43007 532 aa15.12■□□□□ 0.01
SF3A1-201ENST00000215793 TAF12Q16514 161 aa15.12■□□□□ 0.01
SF3A1-201ENST00000215793 INTS8Q75QN2 995 aaKnown RBP15.12■□□□□ 0.01
SF3A1-201ENST00000215793 B4GALNT4Q76KP1 1039 aa15.12■□□□□ 0.01
SF3A1-201ENST00000215793 CCDC117Q8IWD4 279 aaPredicted RBP15.12■□□□□ 0.01
SF3A1-201ENST00000215793 IFT20Q8IY31 132 aa15.12■□□□□ 0.01
SF3A1-201ENST00000215793 IQCDQ96DY2 449 aa15.12■□□□□ 0.01
SF3A1-201ENST00000215793 PKD2L1Q9P0L9 805 aa15.12■□□□□ 0.01
SF3A1-201ENST00000215793 CCNL1Q9UK58 526 aaPredicted RBP15.12■□□□□ 0.01
SF3A1-201ENST00000215793 MAPK8IP1Q9UQF2 711 aa15.12■□□□□ 0.01
SF3A1-201ENST00000215793 PNMA6EA0A0J9YXQ4 647 aa15.12■□□□□ 0.01
SF3A1-201ENST00000215793 GIGYF1O75420 1035 aaPredicted RBP15.12■□□□□ 0.01
SF3A1-201ENST00000215793 MAGEA1P43355 309 aa15.12■□□□□ 0.01
SF3A1-201ENST00000215793 GTF2A1P52655 376 aaPredicted RBP15.12■□□□□ 0.01
SF3A1-201ENST00000215793 STRN3Q13033 797 aa15.12■□□□□ 0.01
SF3A1-201ENST00000215793 SEC62Q99442 399 aaKnown RBP15.12■□□□□ 0.01
SF3A1-201ENST00000215793 PICK1Q9NRD5 415 aa15.12■□□□□ 0.01
SF3A1-201ENST00000215793 DNM3Q9UQ16 869 aa15.12■□□□□ 0.01
SF3A1-201ENST00000215793 KDM2BQ8NHM5 1336 aa15.12■□□□□ 0.01
SF3A1-201ENST00000215793 ZMYM3Q14202 1370 aa15.12■□□□□ 0.01
SF3A1-201ENST00000215793 KIF24Q5T7B8 1368 aa15.12■□□□□ 0.01
SF3A1-201ENST00000215793 CHMP2AO43633 222 aa15.12■□□□□ 0.01
SF3A1-201ENST00000215793 LACTBP83111 547 aaPredicted RBP15.12■□□□□ 0.01
SF3A1-201ENST00000215793 UTP14CQ5TAP6 766 aaKnown RBP15.12■□□□□ 0.01
SF3A1-201ENST00000215793 DAAM2Q86T65 1068 aa15.12■□□□□ 0.01
SF3A1-201ENST00000215793 PPFIBP2Q8ND30 876 aa15.12■□□□□ 0.01
SF3A1-201ENST00000215793 ZNF594Q96JF6 807 aaPredicted RBP15.12■□□□□ 0.01
SF3A1-201ENST00000215793 UTP11Q9Y3A2 253 aaKnown RBP15.12■□□□□ 0.01
SF3A1-201ENST00000215793 TRPC3Q13507 836 aa15.11■□□□□ 0.01
SF3A1-201ENST00000215793 POSTNQ15063 836 aa15.11■□□□□ 0.01
SF3A1-201ENST00000215793 CFAP57Q96MR6 1250 aa15.11■□□□□ 0.01
SF3A1-201ENST00000215793 NUCKS1Q9H1E3 243 aaKnown RBP15.11■□□□□ 0.01
SF3A1-201ENST00000215793 SDAD1Q9NVU7 687 aaKnown RBP eCLIP15.11■□□□□ 0.01
SF3A1-201ENST00000215793 HARSP12081 509 aaKnown RBP15.11■□□□□ 0.01
SF3A1-201ENST00000215793 ATP5JP18859 108 aa15.11■□□□□ 0.01
SF3A1-201ENST00000215793 TERF1P54274 439 aa15.11■□□□□ 0.01
SF3A1-201ENST00000215793 OTUD7BQ6GQQ9 843 aa15.11■□□□□ 0.01
SF3A1-201ENST00000215793 PEG3Q9GZU2 1588 aa15.11■□□□□ 0.01
SF3A1-201ENST00000215793 BRDTQ58F21 947 aaPredicted RBP15.11■□□□□ 0.01
SF3A1-201ENST00000215793 SPATA5Q8NB90 893 aa15.11■□□□□ 0.01
SF3A1-201ENST00000215793 SMC1BQ8NDV3 1235 aa15.11■□□□□ 0.01
SF3A1-201ENST00000215793 AFAP1L1Q8TED9 768 aa15.11■□□□□ 0.01
SF3A1-201ENST00000215793 KIFC2Q96AC6 838 aa15.11■□□□□ 0.01
SF3A1-201ENST00000215793 TMOD4Q9NZQ9 345 aa15.11■□□□□ 0.01
SF3A1-201ENST00000215793 TSKSQ9UJT2 592 aa15.11■□□□□ 0.01
SF3A1-201ENST00000215793 FLOT1O75955 427 aa15.11■□□□□ 0.01
SF3A1-201ENST00000215793 RUFY4Q6ZNE9 571 aa15.11■□□□□ 0.01
SF3A1-201ENST00000215793 HOOK2Q96ED9 719 aa15.11■□□□□ 0.01
SF3A1-201ENST00000215793 SWAP70Q9UH65 585 aa15.11■□□□□ 0.01
SF3A1-201ENST00000215793 INSRP06213 1382 aa15.11■□□□□ 0.01
SF3A1-201ENST00000215793 A1BGP04217 495 aa15.1■□□□□ 0.01
SF3A1-201ENST00000215793 BICRAQ9NZM4 1560 aa15.1■□□□□ 0.01
SF3A1-201ENST00000215793 VIMP08670 466 aaKnown RBP15.1■□□□□ 0.01
SF3A1-201ENST00000215793 LGR6Q9HBX8 967 aa15.1■□□□□ 0.01
SF3A1-201ENST00000215793 AATFQ9NY61 560 aaKnown RBP eCLIP15.1■□□□□ 0.01
SF3A1-201ENST00000215793 KIAA0232Q92628 1395 aa15.1■□□□□ 0.01
SF3A1-201ENST00000215793 U2AF2P26368 475 aaKnown RBP eCLIP15.1■□□□□ 0.014e-7■■□□□ 12
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms