RNA–Protein interactions for RNA: ENSMUST00000052648.8

Ccdc28a-201, Transcript of Coiled-coil domain-containing 28A, mousemouse

TSL 1 (best) BASIC

Gene Ccdc28a, Length 2,255 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28a-201ENSMUST00000052648 Prdm1Q60636 856 aa10.45□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Psen2Q61144 448 aa10.45□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Scnn1aQ61180 699 aa10.45□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 KinQ8K339 391 aa10.45□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Clrn2B2RVW2 232 aa10.44□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 1700006A11RikB9EHI3 544 aa10.44□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Nova2D3YVV7 556 aaKnown RBP10.44□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Lgr6Q3UVD5 967 aa10.44□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 QarsQ8BML9 775 aa10.44□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Gpr108Q91WD0 569 aa10.44□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Styxl1Q9DAR2 321 aa10.44□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Pes1Q9EQ61 584 aaKnown RBP10.44□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Fzd9Q9R216 592 aa10.44□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 A0A1W2P6Q8 802 aa10.44□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Gm9048A0A1W2P7H4 802 aa10.44□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 A0A1W2P7Z8 802 aa10.44□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Gm9046A0A1W2P855 802 aa10.44□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Ppef1O35655 650 aa10.44□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Pde6aP27664 859 aa10.44□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 MyrflQ3UN70 904 aa10.44□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Dnai1Q8C0M8 701 aa10.44□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Nup133Q8R0G9 1155 aa10.44□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Kdm4cQ8VCD7 1054 aa10.44□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Rufy3Q9D394 469 aa10.44□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Znf287Q9EQB9 759 aa10.44□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Atrnl1Q6A051 1378 aa10.44□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Eya3P97480 510 aa10.43□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Pms1Q8K119 917 aa10.43□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Paf1Q8K2T8 535 aa10.43□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Myh8P13542 1937 aa10.43□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Fgl2P12804 432 aa10.42□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Ftl1P29391 183 aa10.42□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Ncf1Q09014 390 aa10.42□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Q3UJP5 209 aa10.42□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Ppp1r11Q8K1L5 131 aa10.42□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Mrpl50Q8VDT9 159 aaKnown RBP10.42□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Chmp4cQ9D7F7 232 aa10.42□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Zcchc17Q9ESX4 241 aaKnown RBP10.42□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Txnrd2Q9JLT4 524 aa10.42□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Cry2Q9R194 592 aa10.42□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Klrc1Q9Z202 244 aa10.42□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Zmym2Q9CU65 1376 aa10.42□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Fam205a1D3YZF6 1314 aa10.42□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Fam196bQ6GQV1 535 aa10.42□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Exoc8Q6PGF7 716 aa10.42□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Slc9c1Q6UJY2 1175 aa10.42□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Hps6Q8BLY7 805 aa10.42□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Pof1bQ8K4L4 587 aa10.42□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Tubb6Q922F4 447 aa10.42□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Tjap1Q9DCD5 539 aa10.42□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 B3galt4Q9Z0F0 371 aa10.42□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Eif5P59325 429 aaKnown RBP10.41□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Mex3cQ05A36 652 aaKnown RBP10.41□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Rc3h1Q4VGL6 1130 aaKnown RBP10.41□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Myl10Q62082 202 aa10.41□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Filip1lQ6P6L0 1131 aa10.41□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Tekt3Q6X6Z7 490 aa10.41□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Terb1Q8C0V1 768 aa10.41□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 BrapQ99MP8 591 aa10.41□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Igf2bp3Q9CPN8 579 aaKnown RBP10.41□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Aldh1b1Q9CZS1 519 aa10.41□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Ddx20Q9JJY4 825 aaKnown RBP10.41□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Tmod2Q9JKK7 351 aa10.41□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Clip2Q9Z0H8 1047 aa10.41□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Zscan18E9PUD6 809 aa10.41□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Slc4a9E9PUP3 929 aa10.41□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Vwa3bJ9JI28 736 aa10.41□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Nmt2O70311 529 aa10.41□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Usp53P15975 1069 aa10.41□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Mtx1P47802 317 aa10.41□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Sec23aQ01405 765 aa10.41□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Gm11437Q5QR91 290 aa10.41□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Akap4Q60662 849 aa10.41□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Mapk4Q6P5G0 583 aa10.41□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Dpp8Q80YA7 892 aa10.41□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 DlatQ8BMF4 642 aa10.41□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 9230110C19RikQ8CC70 267 aa10.41□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 WtapQ9ER69 396 aa10.41□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Myh7bA2AQP0 1941 aa10.4□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 TbcaP48428 108 aaKnown RBP10.4□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Gtpbp6Q3U6U5 514 aa10.4□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Pus7lQ8CE46 702 aa10.4□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 OplahQ8K010 1288 aa10.4□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Apbb1ipQ8R5A3 670 aa10.4□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Snapc2Q91XA5 359 aa10.4□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Akap8Q9DBR0 687 aaKnown RBP10.4□□□□□ -0.74
Ccdc28a-201ENSMUST00000052648 Prr16A3KMN5 304 aa10.4□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 ChgaP26339 463 aaKnown RBP10.4□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Ptpn12P35831 775 aa10.4□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Mybl2P48972 704 aa10.4□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Dnajc2P54103 621 aaKnown RBP10.4□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Bace1P56818 501 aa10.4□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Atp6v1dP57746 247 aa10.4□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Sema3eP70275 775 aa10.4□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Qrich1Q3UA37 777 aa10.4□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 D630036H23RikQ3UQD6 204 aa10.4□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Ppp1r10Q80W00 888 aaKnown RBP10.4□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 Angel2Q8K1C0 544 aa10.4□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 GrapQ9CX99 217 aa10.4□□□□□ -0.75
Ccdc28a-201ENSMUST00000052648 XdhQ00519 1335 aa10.39□□□□□ -0.75
Retrieved 100 of 22,080 RNA–protein pairs in 14.3 ms