RNA–Protein interactions for RNA: ENST00000640499.1

VEGFA-231, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VEGFA, Length 1,188 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-231ENST00000640499 A6NED7 52 aa9.55□□□□□ -0.88
VEGFA-231ENST00000640499 K7ERS5 55 aa9.54□□□□□ -0.88
VEGFA-231ENST00000640499 MT1GP13640 62 aa9.54□□□□□ -0.88
VEGFA-231ENST00000640499 MT1LQ93083 61 aa9.54□□□□□ -0.88
VEGFA-231ENST00000640499 KRTAP25-1Q3LHN0 102 aa9.45□□□□□ -0.9
VEGFA-231ENST00000640499 MT1MQ8N339 61 aa9.42□□□□□ -0.9
VEGFA-231ENST00000640499 KRTAP12-3P60328 96 aa9.38□□□□□ -0.91
VEGFA-231ENST00000640499 PP632Q6XCG6 107 aa9.36□□□□□ -0.91
VEGFA-231ENST00000640499 KRTAP4-3Q9BYR4 195 aa9.26□□□□□ -0.93
VEGFA-231ENST00000640499 CDC42SE1Q9NRR8 79 aa9.21□□□□□ -0.94
VEGFA-231ENST00000640499 KRTAP4-7Q9BYR0 210 aa9.16□□□□□ -0.94
VEGFA-231ENST00000640499 KRTAP23-1A1A580 65 aa9.14□□□□□ -0.95
VEGFA-231ENST00000640499 ROMO1P60602 79 aa9.07□□□□□ -0.96
VEGFA-231ENST00000640499 KRTAP4-9Q9BYQ8 210 aa8.98□□□□□ -0.97
VEGFA-231ENST00000640499 KRTAP15-1Q3LI76 137 aa8.87□□□□□ -0.99
VEGFA-231ENST00000640499 SVIPQ8NHG7 77 aa8.84□□□□□ -0.99
VEGFA-231ENST00000640499 LCE4AQ5TA78 99 aa8.83□□□□□ -1
VEGFA-231ENST00000640499 KRTAP5-4Q6L8H1 288 aa8.82□□□□□ -1
VEGFA-231ENST00000640499 LCE1DQ5T752 114 aa8.8□□□□□ -1
VEGFA-231ENST00000640499 KRTAP19-4Q3LI73 84 aa8.79□□□□□ -1
VEGFA-231ENST00000640499 MT4P47944 62 aa8.72□□□□□ -1.01
VEGFA-231ENST00000640499 HMCN1Q96RW7 5635 aa8.7□□□□□ -1.02
VEGFA-231ENST00000640499 LCE3CQ5T5A8 94 aa8.69□□□□□ -1.02
VEGFA-231ENST00000640499 GPR98Q8WXG9 6306 aa8.66□□□□□ -1.02
VEGFA-231ENST00000640499 LOC100996750A0A140TA64 210 aa8.65□□□□□ -1.02
VEGFA-231ENST00000640499 KRTAP5-5Q701N2 237 aaPredicted RBP8.65□□□□□ -1.02
VEGFA-231ENST00000640499 KRTAP4-6Q9BYQ5 205 aa8.58□□□□□ -1.04
VEGFA-231ENST00000640499 BRK1Q8WUW1 75 aa8.53□□□□□ -1.04
VEGFA-231ENST00000640499 SYNE1Q8NF91 8797 aaKnown RBP8.36□□□□□ -1.07
VEGFA-231ENST00000640499 AHNAK2Q8IVF2 5795 aa8.31□□□□□ -1.08
VEGFA-231ENST00000640499 KRTAP9-6A8MVA2 160 aa8.3□□□□□ -1.08
VEGFA-231ENST00000640499 KRTAP20-2Q3LI61 65 aa8.27□□□□□ -1.09
VEGFA-231ENST00000640499 SPRR5A0A1B0GTR4 108 aa8.24□□□□□ -1.09
VEGFA-231ENST00000640499 KRTAP12-4P60329 112 aa8.21□□□□□ -1.1
VEGFA-231ENST00000640499 KRTAP5-10Q6L8G5 202 aa8.15□□□□□ -1.1
VEGFA-231ENST00000640499 MT1AP04731 61 aa8.1□□□□□ -1.11
VEGFA-231ENST00000640499 KRTAP6-1Q3LI64 71 aa8.08□□□□□ -1.12
VEGFA-231ENST00000640499 KRTAP5-3Q6L8H2 238 aa8.06□□□□□ -1.12
VEGFA-231ENST00000640499 PMAIP1Q13794 54 aa8.03□□□□□ -1.12
VEGFA-231ENST00000640499 KRTAP5-7Q6L8G8 165 aa7.86□□□□□ -1.15
VEGFA-231ENST00000640499 KRTAP9-4Q9BYQ2 154 aa7.82□□□□□ -1.16
VEGFA-231ENST00000640499 KRTAP5-2Q701N4 177 aa7.79□□□□□ -1.16
VEGFA-231ENST00000640499 PRAC1Q96KF2 57 aa7.77□□□□□ -1.17
VEGFA-231ENST00000640499 PRO0628Q9UI54 55 aa7.68□□□□□ -1.18
VEGFA-231ENST00000640499 KRTAP6-2Q3LI66 62 aa7.63□□□□□ -1.19
VEGFA-231ENST00000640499 KRTAP4-11Q9BYQ6 195 aa7.46□□□□□ -1.22
VEGFA-231ENST00000640499 MT3P25713 68 aa7.36□□□□□ -1.23
VEGFA-231ENST00000640499 OBSCNQ5VST9 7968 aa7.31□□□□□ -1.24
VEGFA-231ENST00000640499 KTN1-AS1Q86SY8 53 aa7.27□□□□□ -1.25
VEGFA-231ENST00000640499 KRTAP5-8O75690 187 aa7.24□□□□□ -1.25
VEGFA-231ENST00000640499 KRTAP5-1Q6L8H4 278 aa6.94□□□□□ -1.3
VEGFA-231ENST00000640499 MUC5ACP98088 5654 aa6.83□□□□□ -1.32
VEGFA-231ENST00000640499 KRTAP9-9Q9BYP9 154 aa6.82□□□□□ -1.32
VEGFA-231ENST00000640499 MUC5BQ9HC84 5762 aaPredicted RBP6.78□□□□□ -1.32
VEGFA-231ENST00000640499 AHNAKQ09666 5890 aaKnown RBP6.75□□□□□ -1.33
VEGFA-231ENST00000640499 LCE1EQ5T753 118 aa6.7□□□□□ -1.34
VEGFA-231ENST00000640499 KRTAP4-2Q9BYR5 136 aa6.37□□□□□ -1.39
VEGFA-231ENST00000640499 LUZP6Q538Z0 58 aa6.33□□□□□ -1.4
VEGFA-231ENST00000640499 LCE3DQ9BYE3 92 aa6.29□□□□□ -1.4
VEGFA-231ENST00000640499 LCE1BQ5T7P3 118 aa6.27□□□□□ -1.41
VEGFA-231ENST00000640499 LCE1CQ5T751 118 aa6.23□□□□□ -1.41
VEGFA-231ENST00000640499 H3BS24 57 aa6.15□□□□□ -1.42
VEGFA-231ENST00000640499 LCE3EQ5T5B0 92 aa5.98□□□□□ -1.45
VEGFA-231ENST00000640499 KRTAP5-6Q6L8G9 129 aaPredicted RBP5.73□□□□□ -1.49
VEGFA-231ENST00000640499 A0A0A0MQY5 61 aa5.64□□□□□ -1.51
VEGFA-231ENST00000640499 KRTAP4-12Q9BQ66 201 aa5.63□□□□□ -1.51
VEGFA-231ENST00000640499 KRTAP5-11Q6L8G4 156 aa5.6□□□□□ -1.51
VEGFA-231ENST00000640499 NDUFAF8A1L188 74 aa5.42□□□□□ -1.54
VEGFA-231ENST00000640499 KRTAP21-2Q3LI59 83 aa5.34□□□□□ -1.55
VEGFA-231ENST00000640499 LCE1FQ5T754 118 aa5.34□□□□□ -1.55
VEGFA-231ENST00000640499 PHGR1C9JFL3 82 aa4.85□□□□□ -1.63
VEGFA-231ENST00000640499 KRTAP4-4Q9BYR3 166 aa4.83□□□□□ -1.64
VEGFA-231ENST00000640499 PRM1P04553 51 aa4.69□□□□□ -1.66
VEGFA-231ENST00000640499 MUC19Q7Z5P9 8384 aa4.49□□□□□ -1.69
VEGFA-231ENST00000640499 INE1O15225 51 aa4.33□□□□□ -1.72
VEGFA-231ENST00000640499 KRTAP21-1Q3LI58 79 aa3.63□□□□□ -1.83
VEGFA-231ENST00000640499 MUC16Q8WXI7 14507 aa3.2□□□□□ -1.9
Retrieved 77 of 20,778 RNA–protein pairs in 11.3 ms