RNA–Protein interactions for RNA: ENST00000639394.1

PAX6-256, Transcript of paired box 6, human

TSL 5

Gene PAX6, Length 1,988 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PAX6-256	ENST00000639394	LCE4A	Q5TA78	99 aa		3.98	□□□□□ -1.77
PAX6-256	ENST00000639394	KRTAP10-5	P60370	271 aa		3.98	□□□□□ -1.77
PAX6-256	ENST00000639394	KRTAP19-8	Q3LI54	63 aa		3.94	□□□□□ -1.78
PAX6-256	ENST00000639394	MT1B	P07438	61 aa		3.9	□□□□□ -1.79
PAX6-256	ENST00000639394	LCE5A	Q5TCM9	118 aa		3.89	□□□□□ -1.79
PAX6-256	ENST00000639394	KRTAP6-3	Q3LI67	103 aa		3.83	□□□□□ -1.8
PAX6-256	ENST00000639394	LCE3C	Q5T5A8	94 aa		3.83	□□□□□ -1.8
PAX6-256	ENST00000639394	KRTAP9-7	A8MTY7	169 aa		3.82	□□□□□ -1.8
PAX6-256	ENST00000639394	USH2A	O75445	5202 aa		3.8	□□□□□ -1.8
PAX6-256	ENST00000639394	LCE1A	Q5T7P2	110 aa		3.8	□□□□□ -1.8
PAX6-256	ENST00000639394	KRTAP10-7	P60409	375 aa	Predicted RBP	3.78	□□□□□ -1.8
PAX6-256	ENST00000639394	KRTAP19-4	Q3LI73	84 aa		3.76	□□□□□ -1.81
PAX6-256	ENST00000639394	MT1X	P80297	61 aa		3.76	□□□□□ -1.81
PAX6-256	ENST00000639394	KRTAP12-4	P60329	112 aa		3.74	□□□□□ -1.81
PAX6-256	ENST00000639394	KRTAP19-6	Q3LI70	58 aa		3.7	□□□□□ -1.82
PAX6-256	ENST00000639394	SSPO	A2VEC9	5147 aa		3.67	□□□□□ -1.82
PAX6-256	ENST00000639394	FSIP2	Q5CZC0	6907 aa		3.63	□□□□□ -1.83
PAX6-256	ENST00000639394	KRTAP9-6	A8MVA2	160 aa		3.58	□□□□□ -1.84
PAX6-256	ENST00000639394	CRCT1	Q9UGL9	99 aa		3.58	□□□□□ -1.84
PAX6-256	ENST00000639394	KRTAP19-5	Q3LI72	72 aa		3.56	□□□□□ -1.84
PAX6-256	ENST00000639394	FCGBP	Q9Y6R7	5405 aa	Predicted RBP	3.55	□□□□□ -1.84
PAX6-256	ENST00000639394	LCE1E	Q5T753	118 aa		3.55	□□□□□ -1.84
PAX6-256	ENST00000639394	KMT2D	O14686	5537 aa		3.44	□□□□□ -1.86
PAX6-256	ENST00000639394	LCE1F	Q5T754	118 aa		3.42	□□□□□ -1.86
PAX6-256	ENST00000639394	PRM1	P04553	51 aa		3.37	□□□□□ -1.87
PAX6-256	ENST00000639394	KRTAP19-7	Q3SYF9	63 aa		3.35	□□□□□ -1.87
PAX6-256	ENST00000639394	MACF1	Q9UPN3	7388 aa	Known RBP	3.35	□□□□□ -1.87
PAX6-256	ENST00000639394	MT3	P25713	68 aa		3.34	□□□□□ -1.88
PAX6-256	ENST00000639394	MT1E	P04732	61 aa		3.29	□□□□□ -1.88
PAX6-256	ENST00000639394	KRTAP5-9	P26371	169 aa		3.27	□□□□□ -1.89
PAX6-256	ENST00000639394	MT1A	P04731	61 aa		3.26	□□□□□ -1.89
PAX6-256	ENST00000639394	SPRR2F	Q96RM1	72 aa		3.26	□□□□□ -1.89
PAX6-256	ENST00000639394	SYNE2	Q8WXH0	6885 aa	Known RBP	3.25	□□□□□ -1.89
PAX6-256	ENST00000639394	MT1L	Q93083	61 aa		3.21	□□□□□ -1.89
PAX6-256	ENST00000639394	LCE3E	Q5T5B0	92 aa		3.2	□□□□□ -1.9
PAX6-256	ENST00000639394	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.2	□□□□□ -1.9
PAX6-256	ENST00000639394	MUC12	Q9UKN1	5478 aa		3.19	□□□□□ -1.9
PAX6-256	ENST00000639394	KRTAP19-3	Q7Z4W3	81 aa		3.18	□□□□□ -1.9
PAX6-256	ENST00000639394	MT1G	P13640	62 aa		3.14	□□□□□ -1.91
PAX6-256	ENST00000639394	MDN1	Q9NU22	5596 aa		3.11	□□□□□ -1.91
PAX6-256	ENST00000639394	SPRR2E	P22531	72 aa		3.11	□□□□□ -1.91
PAX6-256	ENST00000639394	SPRR2B	P35325	72 aa		3.11	□□□□□ -1.91
PAX6-256	ENST00000639394	SPRR2A	P35326	72 aa		3.11	□□□□□ -1.91
PAX6-256	ENST00000639394	LCE3D	Q9BYE3	92 aa		3.11	□□□□□ -1.91
PAX6-256	ENST00000639394	MT1M	Q8N339	61 aa		3.1	□□□□□ -1.91
PAX6-256	ENST00000639394	KRTAP4-3	Q9BYR4	195 aa		3.04	□□□□□ -1.92
PAX6-256	ENST00000639394	NEB	P20929	6669 aa		3.01	□□□□□ -1.93
PAX6-256	ENST00000639394	SPRR2D	P22532	72 aa		3	□□□□□ -1.93
PAX6-256	ENST00000639394	KRTAP6-2	Q3LI66	62 aa		2.96	□□□□□ -1.94
PAX6-256	ENST00000639394	KRTAP5-6	Q6L8G9	129 aa	Predicted RBP	2.91	□□□□□ -1.94
PAX6-256	ENST00000639394	DST	Q03001	7570 aa	Known RBP	2.88	□□□□□ -1.95
PAX6-256	ENST00000639394	SYNE1	Q8NF91	8797 aa	Known RBP	2.88	□□□□□ -1.95
PAX6-256	ENST00000639394	HMCN1	Q96RW7	5635 aa		2.87	□□□□□ -1.95
PAX6-256	ENST00000639394	KRTAP20-1	Q3LI63	56 aa		2.79	□□□□□ -1.96
PAX6-256	ENST00000639394	KRTAP5-11	Q6L8G4	156 aa		2.74	□□□□□ -1.97
PAX6-256	ENST00000639394	KRTAP5-4	Q6L8H1	288 aa		2.72	□□□□□ -1.97
PAX6-256	ENST00000639394	KRTAP6-1	Q3LI64	71 aa		2.71	□□□□□ -1.98
PAX6-256	ENST00000639394	MT4	P47944	62 aa		2.6	□□□□□ -1.99
PAX6-256	ENST00000639394	KRTAP20-2	Q3LI61	65 aa		2.54	□□□□□ -2
PAX6-256	ENST00000639394	KRTAP5-1	Q6L8H4	278 aa		2.49	□□□□□ -2.01
PAX6-256	ENST00000639394	KRTAP5-2	Q701N4	177 aa		2.46	□□□□□ -2.02
PAX6-256	ENST00000639394	KRTAP4-4	Q9BYR3	166 aa		2.4	□□□□□ -2.03
PAX6-256	ENST00000639394	LCE1C	Q5T751	118 aa		2.39	□□□□□ -2.03
PAX6-256	ENST00000639394	LCE1B	Q5T7P3	118 aa		2.39	□□□□□ -2.03
PAX6-256	ENST00000639394	OBSCN	Q5VST9	7968 aa		2.37	□□□□□ -2.03
PAX6-256	ENST00000639394	KRTAP21-1	Q3LI58	79 aa		2.34	□□□□□ -2.03
PAX6-256	ENST00000639394	AHNAK2	Q8IVF2	5795 aa		2.27	□□□□□ -2.05
PAX6-256	ENST00000639394	KRTAP5-10	Q6L8G5	202 aa		2.18	□□□□□ -2.06
PAX6-256	ENST00000639394	KRTAP5-8	O75690	187 aa		2.18	□□□□□ -2.06
PAX6-256	ENST00000639394	GPR98	Q8WXG9	6306 aa		2.09	□□□□□ -2.07
PAX6-256	ENST00000639394	KRTAP5-7	Q6L8G8	165 aa		2.07	□□□□□ -2.08
PAX6-256	ENST00000639394	MUC5AC	P98088	5654 aa		2.02	□□□□□ -2.09
PAX6-256	ENST00000639394	MUC19	Q7Z5P9	8384 aa		1.9	□□□□□ -2.1
PAX6-256	ENST00000639394	MUC5B	Q9HC84	5762 aa	Predicted RBP	1.82	□□□□□ -2.12
PAX6-256	ENST00000639394	KRTAP21-2	Q3LI59	83 aa		1.78	□□□□□ -2.12
PAX6-256	ENST00000639394	AHNAK	Q09666	5890 aa	Known RBP	1.73	□□□□□ -2.13
PAX6-256	ENST00000639394	PHGR1	C9JFL3	82 aa		1.54	□□□□□ -2.16
PAX6-256	ENST00000639394	MUC16	Q8WXI7	14507 aa		1.1	□□□□□ -2.23

Retrieved 78 of 20,778 RNA–protein pairs in 79.4 ms