RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 A0A1B0GU69 56 aa5.87□□□□□ -1.47
CLN3-264ENST00000637985 SMIM26A0A096LP01 95 aa5.86□□□□□ -1.47
CLN3-264ENST00000637985 MT1MQ8N339 61 aa5.85□□□□□ -1.47
CLN3-264ENST00000637985 ATP5EP56381 51 aaPredicted RBP5.84□□□□□ -1.47
CLN3-264ENST00000637985 KRTAP19-5Q3LI72 72 aa5.82□□□□□ -1.48
CLN3-264ENST00000637985 TMEM258P61165 79 aa5.8□□□□□ -1.48
CLN3-264ENST00000637985 A8MU10 97 aa5.76□□□□□ -1.49
CLN3-264ENST00000637985 KRTAP4-3Q9BYR4 195 aa5.75□□□□□ -1.49
CLN3-264ENST00000637985 KRTAP20-2Q3LI61 65 aa5.74□□□□□ -1.49
CLN3-264ENST00000637985 TNP1P09430 55 aa5.7□□□□□ -1.5
CLN3-264ENST00000637985 PRR15LQ9BU68 103 aa5.7□□□□□ -1.5
CLN3-264ENST00000637985 MT1LQ93083 61 aa5.69□□□□□ -1.5
CLN3-264ENST00000637985 C10orf95Q9H7T3 257 aa5.67□□□□□ -1.5
CLN3-264ENST00000637985 LCE3AQ5TA76 89 aa5.65□□□□□ -1.5
CLN3-264ENST00000637985 LINC01558Q9Y6Z2 57 aa5.61□□□□□ -1.51
CLN3-264ENST00000637985 AHNAKQ09666 5890 aaKnown RBP5.58□□□□□ -1.52
CLN3-264ENST00000637985 UQCR11O14957 56 aa5.5□□□□□ -1.53
CLN3-264ENST00000637985 MUC5ACP98088 5654 aa5.48□□□□□ -1.53
CLN3-264ENST00000637985 KRTAP12-4P60329 112 aa5.47□□□□□ -1.53
CLN3-264ENST00000637985 KRTAP5-5Q701N2 237 aaPredicted RBP5.46□□□□□ -1.54
CLN3-264ENST00000637985 SYNE1Q8NF91 8797 aaKnown RBP5.45□□□□□ -1.54
CLN3-264ENST00000637985 KRTAP12-3P60328 96 aa5.45□□□□□ -1.54
CLN3-264ENST00000637985 KRTAP4-11Q9BYQ6 195 aa5.44□□□□□ -1.54
CLN3-264ENST00000637985 MUC5BQ9HC84 5762 aaPredicted RBP5.44□□□□□ -1.54
CLN3-264ENST00000637985 RPS28P62857 69 aaKnown RBP5.42□□□□□ -1.54
CLN3-264ENST00000637985 Q1T7F1 81 aa5.41□□□□□ -1.54
CLN3-264ENST00000637985 V9GYY9 64 aa5.4□□□□□ -1.54
CLN3-264ENST00000637985 KRTAP4-7Q9BYR0 210 aa5.38□□□□□ -1.55
CLN3-264ENST00000637985 MIR22HGQ0VDD5 57 aa5.35□□□□□ -1.55
CLN3-264ENST00000637985 KRTAP25-1Q3LHN0 102 aa5.34□□□□□ -1.55
CLN3-264ENST00000637985 PSPHP1O15172 72 aa5.31□□□□□ -1.56
CLN3-264ENST00000637985 KRTAP5-8O75690 187 aa5.31□□□□□ -1.56
CLN3-264ENST00000637985 K7ERS5 55 aa5.29□□□□□ -1.56
CLN3-264ENST00000637985 KRTAP19-4Q3LI73 84 aa5.21□□□□□ -1.58
CLN3-264ENST00000637985 KRTAP23-1A1A580 65 aa5.17□□□□□ -1.58
CLN3-264ENST00000637985 KRTAP5-2Q701N4 177 aa5.17□□□□□ -1.58
CLN3-264ENST00000637985 LOC100996750A0A140TA64 210 aa5.14□□□□□ -1.59
CLN3-264ENST00000637985 A6NED7 52 aa5.14□□□□□ -1.59
CLN3-264ENST00000637985 KRTAP9-9Q9BYP9 154 aa5.12□□□□□ -1.59
CLN3-264ENST00000637985 OBSCNQ5VST9 7968 aa5.11□□□□□ -1.59
CLN3-264ENST00000637985 KRTAP15-1Q3LI76 137 aa5.08□□□□□ -1.6
CLN3-264ENST00000637985 LCE3CQ5T5A8 94 aa5.02□□□□□ -1.61
CLN3-264ENST00000637985 CDC42SE1Q9NRR8 79 aa5.02□□□□□ -1.61
CLN3-264ENST00000637985 PRO0628Q9UI54 55 aa4.96□□□□□ -1.62
CLN3-264ENST00000637985 ROMO1P60602 79 aa4.9□□□□□ -1.63
CLN3-264ENST00000637985 KRTAP6-1Q3LI64 71 aa4.85□□□□□ -1.63
CLN3-264ENST00000637985 MT1AP04731 61 aa4.83□□□□□ -1.64
CLN3-264ENST00000637985 KRTAP6-2Q3LI66 62 aa4.78□□□□□ -1.64
CLN3-264ENST00000637985 KRTAP9-4Q9BYQ2 154 aa4.78□□□□□ -1.64
CLN3-264ENST00000637985 KRTAP5-1Q6L8H4 278 aa4.77□□□□□ -1.65
CLN3-264ENST00000637985 BRK1Q8WUW1 75 aa4.76□□□□□ -1.65
CLN3-264ENST00000637985 KRTAP9-6A8MVA2 160 aa4.71□□□□□ -1.66
CLN3-264ENST00000637985 PMAIP1Q13794 54 aa4.67□□□□□ -1.66
CLN3-264ENST00000637985 KTN1-AS1Q86SY8 53 aa4.49□□□□□ -1.69
CLN3-264ENST00000637985 MT3P25713 68 aa4.44□□□□□ -1.7
CLN3-264ENST00000637985 LCE1EQ5T753 118 aa4.28□□□□□ -1.72
CLN3-264ENST00000637985 PRAC1Q96KF2 57 aa4.26□□□□□ -1.73
CLN3-264ENST00000637985 H3BS24 57 aa4.19□□□□□ -1.74
CLN3-264ENST00000637985 KRTAP4-2Q9BYR5 136 aa4.13□□□□□ -1.75
CLN3-264ENST00000637985 LCE1BQ5T7P3 118 aa4.07□□□□□ -1.76
CLN3-264ENST00000637985 KRTAP4-12Q9BQ66 201 aa4□□□□□ -1.77
CLN3-264ENST00000637985 LCE1CQ5T751 118 aa3.98□□□□□ -1.77
CLN3-264ENST00000637985 KRTAP5-11Q6L8G4 156 aa3.84□□□□□ -1.79
CLN3-264ENST00000637985 PHGR1C9JFL3 82 aa3.76□□□□□ -1.81
CLN3-264ENST00000637985 LCE1FQ5T754 118 aa3.75□□□□□ -1.81
CLN3-264ENST00000637985 A0A0A0MQY5 61 aa3.72□□□□□ -1.81
CLN3-264ENST00000637985 LCE3DQ9BYE3 92 aa3.61□□□□□ -1.83
CLN3-264ENST00000637985 LUZP6Q538Z0 58 aa3.53□□□□□ -1.84
CLN3-264ENST00000637985 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.53□□□□□ -1.84
CLN3-264ENST00000637985 NDUFAF8A1L188 74 aa3.52□□□□□ -1.85
CLN3-264ENST00000637985 LCE3EQ5T5B0 92 aa3.39□□□□□ -1.87
CLN3-264ENST00000637985 KRTAP21-2Q3LI59 83 aa3.23□□□□□ -1.89
CLN3-264ENST00000637985 MUC19Q7Z5P9 8384 aa3.21□□□□□ -1.9
CLN3-264ENST00000637985 INE1O15225 51 aa3.15□□□□□ -1.91
CLN3-264ENST00000637985 KRTAP4-4Q9BYR3 166 aa3.05□□□□□ -1.92
CLN3-264ENST00000637985 KRTAP21-1Q3LI58 79 aa2.87□□□□□ -1.95
CLN3-264ENST00000637985 PRM1P04553 51 aa2.48□□□□□ -2.01
CLN3-264ENST00000637985 MUC16Q8WXI7 14507 aa2.18□□□□□ -2.06
Retrieved 78 of 20,778 RNA–protein pairs in 99.9 ms