RNA–Protein interactions for RNA: ENST00000636214.1

PNKP-225, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 805 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-225ENST00000636214 LCE3AQ5TA76 89 aa6.35□□□□□ -1.39
PNKP-225ENST00000636214 C10orf95Q9H7T3 257 aa6.35□□□□□ -1.39
PNKP-225ENST00000636214 V9GYY9 64 aa6.34□□□□□ -1.39
PNKP-225ENST00000636214 LCE4AQ5TA78 99 aa6.31□□□□□ -1.4
PNKP-225ENST00000636214 LCE1DQ5T752 114 aa6.3□□□□□ -1.4
PNKP-225ENST00000636214 Q1T7F1 81 aa6.29□□□□□ -1.4
PNKP-225ENST00000636214 MT4P47944 62 aa6.25□□□□□ -1.41
PNKP-225ENST00000636214 HMCN1Q96RW7 5635 aa6.25□□□□□ -1.41
PNKP-225ENST00000636214 PSPHP1O15172 72 aa6.2□□□□□ -1.42
PNKP-225ENST00000636214 KRTAP4-3Q9BYR4 195 aa6.18□□□□□ -1.42
PNKP-225ENST00000636214 UQCR11O14957 56 aa6.16□□□□□ -1.42
PNKP-225ENST00000636214 KRTAP12-3P60328 96 aa6.13□□□□□ -1.43
PNKP-225ENST00000636214 KRTAP5-4Q6L8H1 288 aa6.09□□□□□ -1.43
PNKP-225ENST00000636214 AHNAK2Q8IVF2 5795 aa6.06□□□□□ -1.44
PNKP-225ENST00000636214 A6NED7 52 aa6.05□□□□□ -1.44
PNKP-225ENST00000636214 MIR22HGQ0VDD5 57 aa6.05□□□□□ -1.44
PNKP-225ENST00000636214 K7ERS5 55 aa6.01□□□□□ -1.45
PNKP-225ENST00000636214 KRTAP4-7Q9BYR0 210 aa6.01□□□□□ -1.45
PNKP-225ENST00000636214 KRTAP4-6Q9BYQ5 205 aa6□□□□□ -1.45
PNKP-225ENST00000636214 KRTAP25-1Q3LHN0 102 aa5.99□□□□□ -1.45
PNKP-225ENST00000636214 KRTAP5-10Q6L8G5 202 aa5.88□□□□□ -1.47
PNKP-225ENST00000636214 CDC42SE1Q9NRR8 79 aa5.86□□□□□ -1.47
PNKP-225ENST00000636214 KRTAP12-4P60329 112 aa5.8□□□□□ -1.48
PNKP-225ENST00000636214 KRTAP19-4Q3LI73 84 aa5.8□□□□□ -1.48
PNKP-225ENST00000636214 KRTAP5-5Q701N2 237 aaPredicted RBP5.8□□□□□ -1.48
PNKP-225ENST00000636214 KRTAP20-2Q3LI61 65 aa5.79□□□□□ -1.48
PNKP-225ENST00000636214 SPRR5A0A1B0GTR4 108 aa5.77□□□□□ -1.49
PNKP-225ENST00000636214 KRTAP5-3Q6L8H2 238 aa5.75□□□□□ -1.49
PNKP-225ENST00000636214 BRK1Q8WUW1 75 aa5.75□□□□□ -1.49
PNKP-225ENST00000636214 KRTAP23-1A1A580 65 aa5.73□□□□□ -1.49
PNKP-225ENST00000636214 LOC100996750A0A140TA64 210 aa5.7□□□□□ -1.5
PNKP-225ENST00000636214 KRTAP15-1Q3LI76 137 aa5.69□□□□□ -1.5
PNKP-225ENST00000636214 KRTAP5-7Q6L8G8 165 aa5.68□□□□□ -1.5
PNKP-225ENST00000636214 LCE3CQ5T5A8 94 aa5.62□□□□□ -1.51
PNKP-225ENST00000636214 SYNE1Q8NF91 8797 aaKnown RBP5.59□□□□□ -1.51
PNKP-225ENST00000636214 ROMO1P60602 79 aa5.54□□□□□ -1.52
PNKP-225ENST00000636214 PRO0628Q9UI54 55 aa5.45□□□□□ -1.54
PNKP-225ENST00000636214 PMAIP1Q13794 54 aa5.43□□□□□ -1.54
PNKP-225ENST00000636214 MT1AP04731 61 aa5.42□□□□□ -1.54
PNKP-225ENST00000636214 KRTAP6-1Q3LI64 71 aa5.38□□□□□ -1.55
PNKP-225ENST00000636214 KRTAP4-11Q9BYQ6 195 aa5.33□□□□□ -1.56
PNKP-225ENST00000636214 KRTAP5-2Q701N4 177 aa5.31□□□□□ -1.56
PNKP-225ENST00000636214 KRTAP9-4Q9BYQ2 154 aa5.25□□□□□ -1.57
PNKP-225ENST00000636214 KRTAP9-6A8MVA2 160 aa5.22□□□□□ -1.57
PNKP-225ENST00000636214 KRTAP6-2Q3LI66 62 aa5.18□□□□□ -1.58
PNKP-225ENST00000636214 KRTAP5-8O75690 187 aa5.11□□□□□ -1.59
PNKP-225ENST00000636214 KTN1-AS1Q86SY8 53 aa5.09□□□□□ -1.59
PNKP-225ENST00000636214 PRAC1Q96KF2 57 aa5.07□□□□□ -1.6
PNKP-225ENST00000636214 MUC5BQ9HC84 5762 aaPredicted RBP5.03□□□□□ -1.6
PNKP-225ENST00000636214 AHNAKQ09666 5890 aaKnown RBP5.02□□□□□ -1.61
PNKP-225ENST00000636214 OBSCNQ5VST9 7968 aa5.01□□□□□ -1.61
PNKP-225ENST00000636214 MT3P25713 68 aa5□□□□□ -1.61
PNKP-225ENST00000636214 KRTAP4-12Q9BQ66 201 aa4.99□□□□□ -1.61
PNKP-225ENST00000636214 MUC5ACP98088 5654 aa4.97□□□□□ -1.61
PNKP-225ENST00000636214 KRTAP9-9Q9BYP9 154 aa4.96□□□□□ -1.62
PNKP-225ENST00000636214 H3BS24 57 aa4.89□□□□□ -1.63
PNKP-225ENST00000636214 SVIPQ8NHG7 77 aa4.86□□□□□ -1.63
PNKP-225ENST00000636214 KRTAP5-1Q6L8H4 278 aa4.79□□□□□ -1.64
PNKP-225ENST00000636214 LCE1EQ5T753 118 aa4.58□□□□□ -1.68
PNKP-225ENST00000636214 LCE1BQ5T7P3 118 aa4.37□□□□□ -1.71
PNKP-225ENST00000636214 KRTAP4-2Q9BYR5 136 aa4.31□□□□□ -1.72
PNKP-225ENST00000636214 LUZP6Q538Z0 58 aa4.27□□□□□ -1.73
PNKP-225ENST00000636214 LCE1CQ5T751 118 aa4.25□□□□□ -1.73
PNKP-225ENST00000636214 LCE3DQ9BYE3 92 aa4.05□□□□□ -1.76
PNKP-225ENST00000636214 NDUFAF8A1L188 74 aa3.9□□□□□ -1.79
PNKP-225ENST00000636214 KRTAP5-11Q6L8G4 156 aa3.86□□□□□ -1.79
PNKP-225ENST00000636214 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.83□□□□□ -1.8
PNKP-225ENST00000636214 LCE3EQ5T5B0 92 aa3.8□□□□□ -1.8
PNKP-225ENST00000636214 LCE1FQ5T754 118 aa3.79□□□□□ -1.8
PNKP-225ENST00000636214 KRTAP21-2Q3LI59 83 aa3.51□□□□□ -1.85
PNKP-225ENST00000636214 PHGR1C9JFL3 82 aa3.48□□□□□ -1.85
PNKP-225ENST00000636214 A0A0A0MQY5 61 aa3.39□□□□□ -1.87
PNKP-225ENST00000636214 KRTAP4-4Q9BYR3 166 aa3.27□□□□□ -1.89
PNKP-225ENST00000636214 INE1O15225 51 aa3.23□□□□□ -1.89
PNKP-225ENST00000636214 MUC19Q7Z5P9 8384 aa3.09□□□□□ -1.91
PNKP-225ENST00000636214 PRM1P04553 51 aa2.85□□□□□ -1.95
PNKP-225ENST00000636214 KRTAP21-1Q3LI58 79 aa2.66□□□□□ -1.98
PNKP-225ENST00000636214 MUC16Q8WXI7 14507 aa2.21□□□□□ -2.06
Retrieved 78 of 20,778 RNA–protein pairs in 140.1 ms