RNA–Protein interactions for RNA: ENST00000629179.1

PNKP-223, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 4

Gene PNKP, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-223ENST00000629179 LCE3BQ5TA77 95 aa5.3□□□□□ -1.56
PNKP-223ENST00000629179 MT1EP04732 61 aa5.28□□□□□ -1.56
PNKP-223ENST00000629179 KRTAP19-5Q3LI72 72 aa5.23□□□□□ -1.57
PNKP-223ENST00000629179 LCE5AQ5TCM9 118 aa5.23□□□□□ -1.57
PNKP-223ENST00000629179 C10orf95Q9H7T3 257 aa5.23□□□□□ -1.57
PNKP-223ENST00000629179 KRTAP19-3Q7Z4W3 81 aa5.22□□□□□ -1.57
PNKP-223ENST00000629179 TNP1P09430 55 aa5.17□□□□□ -1.58
PNKP-223ENST00000629179 ROMO1P60602 79 aa5.15□□□□□ -1.59
PNKP-223ENST00000629179 LCE3AQ5TA76 89 aa5.14□□□□□ -1.59
PNKP-223ENST00000629179 MT1GP13640 62 aa5.11□□□□□ -1.59
PNKP-223ENST00000629179 PRAC1Q96KF2 57 aa5.08□□□□□ -1.6
PNKP-223ENST00000629179 DSTQ03001 7570 aaKnown RBP5.06□□□□□ -1.6
PNKP-223ENST00000629179 MT1LQ93083 61 aa5.06□□□□□ -1.6
PNKP-223ENST00000629179 PP632Q6XCG6 107 aa5.04□□□□□ -1.6
PNKP-223ENST00000629179 KRTAP25-1Q3LHN0 102 aa5.03□□□□□ -1.6
PNKP-223ENST00000629179 MT1MQ8N339 61 aa5.03□□□□□ -1.6
PNKP-223ENST00000629179 KRTAP4-9Q9BYQ8 210 aa4.94□□□□□ -1.62
PNKP-223ENST00000629179 KRTAP4-3Q9BYR4 195 aa4.94□□□□□ -1.62
PNKP-223ENST00000629179 KRTAP12-3P60328 96 aa4.93□□□□□ -1.62
PNKP-223ENST00000629179 GPR98Q8WXG9 6306 aa4.89□□□□□ -1.63
PNKP-223ENST00000629179 KRTAP4-7Q9BYR0 210 aa4.86□□□□□ -1.63
PNKP-223ENST00000629179 LCE1DQ5T752 114 aa4.81□□□□□ -1.64
PNKP-223ENST00000629179 LCE4AQ5TA78 99 aa4.81□□□□□ -1.64
PNKP-223ENST00000629179 MT4P47944 62 aa4.78□□□□□ -1.64
PNKP-223ENST00000629179 KRTAP5-4Q6L8H1 288 aa4.74□□□□□ -1.65
PNKP-223ENST00000629179 KRTAP23-1A1A580 65 aa4.73□□□□□ -1.65
PNKP-223ENST00000629179 KRTAP4-6Q9BYQ5 205 aa4.66□□□□□ -1.66
PNKP-223ENST00000629179 HMCN1Q96RW7 5635 aa4.64□□□□□ -1.67
PNKP-223ENST00000629179 KRTAP15-1Q3LI76 137 aa4.63□□□□□ -1.67
PNKP-223ENST00000629179 KRTAP19-4Q3LI73 84 aa4.61□□□□□ -1.67
PNKP-223ENST00000629179 LOC100996750A0A140TA64 210 aa4.59□□□□□ -1.67
PNKP-223ENST00000629179 KRTAP5-5Q701N2 237 aaPredicted RBP4.59□□□□□ -1.67
PNKP-223ENST00000629179 LCE3CQ5T5A8 94 aa4.55□□□□□ -1.68
PNKP-223ENST00000629179 KRTAP20-2Q3LI61 65 aa4.48□□□□□ -1.69
PNKP-223ENST00000629179 AHNAK2Q8IVF2 5795 aa4.46□□□□□ -1.7
PNKP-223ENST00000629179 SPRR5A0A1B0GTR4 108 aa4.45□□□□□ -1.7
PNKP-223ENST00000629179 KRTAP12-4P60329 112 aa4.45□□□□□ -1.7
PNKP-223ENST00000629179 KRTAP5-10Q6L8G5 202 aa4.43□□□□□ -1.7
PNKP-223ENST00000629179 KRTAP5-3Q6L8H2 238 aa4.35□□□□□ -1.71
PNKP-223ENST00000629179 SYNE1Q8NF91 8797 aaKnown RBP4.35□□□□□ -1.71
PNKP-223ENST00000629179 LUZP6Q538Z0 58 aa4.33□□□□□ -1.72
PNKP-223ENST00000629179 KRTAP9-6A8MVA2 160 aa4.31□□□□□ -1.72
PNKP-223ENST00000629179 MT1AP04731 61 aa4.31□□□□□ -1.72
PNKP-223ENST00000629179 KRTAP6-1Q3LI64 71 aa4.29□□□□□ -1.72
PNKP-223ENST00000629179 KRTAP5-7Q6L8G8 165 aa4.24□□□□□ -1.73
PNKP-223ENST00000629179 NDUFAF8A1L188 74 aa4.23□□□□□ -1.73
PNKP-223ENST00000629179 KRTAP5-2Q701N4 177 aa4.16□□□□□ -1.74
PNKP-223ENST00000629179 KRTAP9-4Q9BYQ2 154 aa4.16□□□□□ -1.74
PNKP-223ENST00000629179 H3BS24 57 aa4.11□□□□□ -1.75
PNKP-223ENST00000629179 KRTAP6-2Q3LI66 62 aa4.08□□□□□ -1.76
PNKP-223ENST00000629179 KRTAP4-11Q9BYQ6 195 aa4.07□□□□□ -1.76
PNKP-223ENST00000629179 A0A0A0MQY5 61 aa3.95□□□□□ -1.78
PNKP-223ENST00000629179 KRTAP5-8O75690 187 aa3.94□□□□□ -1.78
PNKP-223ENST00000629179 MT3P25713 68 aa3.93□□□□□ -1.78
PNKP-223ENST00000629179 OBSCNQ5VST9 7968 aa3.85□□□□□ -1.79
PNKP-223ENST00000629179 KRTAP5-1Q6L8H4 278 aa3.73□□□□□ -1.81
PNKP-223ENST00000629179 KRTAP9-9Q9BYP9 154 aa3.71□□□□□ -1.82
PNKP-223ENST00000629179 INE1O15225 51 aa3.67□□□□□ -1.82
PNKP-223ENST00000629179 AHNAKQ09666 5890 aaKnown RBP3.67□□□□□ -1.82
PNKP-223ENST00000629179 MUC5ACP98088 5654 aa3.65□□□□□ -1.83
PNKP-223ENST00000629179 MUC5BQ9HC84 5762 aaPredicted RBP3.63□□□□□ -1.83
PNKP-223ENST00000629179 LCE1EQ5T753 118 aa3.57□□□□□ -1.84
PNKP-223ENST00000629179 LCE1BQ5T7P3 118 aa3.4□□□□□ -1.87
PNKP-223ENST00000629179 KRTAP4-2Q9BYR5 136 aa3.4□□□□□ -1.87
PNKP-223ENST00000629179 LCE1CQ5T751 118 aa3.32□□□□□ -1.88
PNKP-223ENST00000629179 LCE3DQ9BYE3 92 aa3.29□□□□□ -1.88
PNKP-223ENST00000629179 LCE3EQ5T5B0 92 aa3.11□□□□□ -1.91
PNKP-223ENST00000629179 KRTAP4-12Q9BQ66 201 aa3.09□□□□□ -1.91
PNKP-223ENST00000629179 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.03□□□□□ -1.92
PNKP-223ENST00000629179 KRTAP5-11Q6L8G4 156 aa3□□□□□ -1.93
PNKP-223ENST00000629179 LCE1FQ5T754 118 aa2.89□□□□□ -1.95
PNKP-223ENST00000629179 KRTAP21-2Q3LI59 83 aa2.82□□□□□ -1.96
PNKP-223ENST00000629179 PRM1P04553 51 aa2.63□□□□□ -1.99
PNKP-223ENST00000629179 KRTAP4-4Q9BYR3 166 aa2.61□□□□□ -1.99
PNKP-223ENST00000629179 PHGR1C9JFL3 82 aa2.6□□□□□ -1.99
PNKP-223ENST00000629179 MUC19Q7Z5P9 8384 aa2.37□□□□□ -2.03
PNKP-223ENST00000629179 KRTAP21-1Q3LI58 79 aa1.94□□□□□ -2.1
PNKP-223ENST00000629179 MUC16Q8WXI7 14507 aa1.71□□□□□ -2.13
Retrieved 78 of 20,778 RNA–protein pairs in 108.6 ms