RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 KRTAP19-6Q3LI70 58 aa3.87□□□□□ -1.79
VPS11-208ENST00000621676 KRTAP4-3Q9BYR4 195 aa3.85□□□□□ -1.79
VPS11-208ENST00000621676 SPRR5A0A1B0GTR4 108 aa3.84□□□□□ -1.79
VPS11-208ENST00000621676 KRTAP19-7Q3SYF9 63 aa3.82□□□□□ -1.8
VPS11-208ENST00000621676 KRTAP9-6A0A140TA67 174 aa3.75□□□□□ -1.81
VPS11-208ENST00000621676 LOC100996750A0A140TA64 210 aa3.74□□□□□ -1.81
VPS11-208ENST00000621676 MT1EP04732 61 aa3.71□□□□□ -1.82
VPS11-208ENST00000621676 LCE3CQ5T5A8 94 aa3.68□□□□□ -1.82
VPS11-208ENST00000621676 MT1GP13640 62 aa3.67□□□□□ -1.82
VPS11-208ENST00000621676 MT1LQ93083 61 aa3.67□□□□□ -1.82
VPS11-208ENST00000621676 KRTAP9-6A8MVA2 160 aa3.65□□□□□ -1.83
VPS11-208ENST00000621676 SPRR2EP22531 72 aa3.58□□□□□ -1.84
VPS11-208ENST00000621676 SPRR2BP35325 72 aa3.58□□□□□ -1.84
VPS11-208ENST00000621676 SPRR2AP35326 72 aa3.58□□□□□ -1.84
VPS11-208ENST00000621676 KRTAP19-3Q7Z4W3 81 aa3.55□□□□□ -1.84
VPS11-208ENST00000621676 KRTAP9-1A8MXZ3 250 aaPredicted RBP3.54□□□□□ -1.84
VPS11-208ENST00000621676 MT1MQ8N339 61 aa3.52□□□□□ -1.85
VPS11-208ENST00000621676 INE1O15225 51 aa3.5□□□□□ -1.85
VPS11-208ENST00000621676 LCE4AQ5TA78 99 aa3.5□□□□□ -1.85
VPS11-208ENST00000621676 LCE1AQ5T7P2 110 aa3.45□□□□□ -1.86
VPS11-208ENST00000621676 LCE5AQ5TCM9 118 aa3.41□□□□□ -1.86
VPS11-208ENST00000621676 KRTAP9-7A8MTY7 169 aa3.4□□□□□ -1.87
VPS11-208ENST00000621676 SPRR2DP22532 72 aa3.4□□□□□ -1.87
VPS11-208ENST00000621676 LCE3BQ5TA77 95 aa3.36□□□□□ -1.87
VPS11-208ENST00000621676 KRTAP4-9Q9BYQ8 210 aa3.33□□□□□ -1.88
VPS11-208ENST00000621676 KRTAP5-9P26371 169 aa3.31□□□□□ -1.88
VPS11-208ENST00000621676 KRTAP6-3Q3LI67 103 aa3.31□□□□□ -1.88
VPS11-208ENST00000621676 NEBP20929 6669 aa3.28□□□□□ -1.88
VPS11-208ENST00000621676 KRTAP6-1Q3LI64 71 aa3.22□□□□□ -1.89
VPS11-208ENST00000621676 MT4P47944 62 aa3.22□□□□□ -1.89
VPS11-208ENST00000621676 KRTAP9-4Q9BYQ2 154 aa3.21□□□□□ -1.9
VPS11-208ENST00000621676 KRTAP9-9Q9BYP9 154 aa3.19□□□□□ -1.9
VPS11-208ENST00000621676 KRTAP2-3P0C7H8 128 aa3.14□□□□□ -1.91
VPS11-208ENST00000621676 KRTAP2-4Q9BYR9 128 aa3.14□□□□□ -1.91
VPS11-208ENST00000621676 KRTAP2-1Q9BYU5 128 aa3.14□□□□□ -1.91
VPS11-208ENST00000621676 KRTAP19-4Q3LI73 84 aa3.08□□□□□ -1.92
VPS11-208ENST00000621676 KRTAP4-6Q9BYQ5 205 aa3.07□□□□□ -1.92
VPS11-208ENST00000621676 HMCN1Q96RW7 5635 aa3.01□□□□□ -1.93
VPS11-208ENST00000621676 KRTAP6-2Q3LI66 62 aa3□□□□□ -1.93
VPS11-208ENST00000621676 MT1AP04731 61 aa3□□□□□ -1.93
VPS11-208ENST00000621676 LCE1FQ5T754 118 aa3□□□□□ -1.93
VPS11-208ENST00000621676 KRTAP12-4P60329 112 aa2.99□□□□□ -1.93
VPS11-208ENST00000621676 KRTAP2-2Q9BYT5 123 aa2.97□□□□□ -1.93
VPS11-208ENST00000621676 KRTAP20-1Q3LI63 56 aa2.96□□□□□ -1.94
VPS11-208ENST00000621676 KRTAP5-5Q701N2 237 aaPredicted RBP2.94□□□□□ -1.94
VPS11-208ENST00000621676 LCE1DQ5T752 114 aa2.9□□□□□ -1.94
VPS11-208ENST00000621676 LCE1EQ5T753 118 aa2.9□□□□□ -1.95
VPS11-208ENST00000621676 LCE3DQ9BYE3 92 aa2.86□□□□□ -1.95
VPS11-208ENST00000621676 MT3P25713 68 aa2.78□□□□□ -1.96
VPS11-208ENST00000621676 KRTAP20-2Q3LI61 65 aa2.76□□□□□ -1.97
VPS11-208ENST00000621676 KRTAP5-4Q6L8H1 288 aa2.75□□□□□ -1.97
VPS11-208ENST00000621676 LCE3EQ5T5B0 92 aa2.74□□□□□ -1.97
VPS11-208ENST00000621676 KRTAP4-12Q9BQ66 201 aa2.73□□□□□ -1.97
VPS11-208ENST00000621676 MUC5ACP98088 5654 aa2.73□□□□□ -1.97
VPS11-208ENST00000621676 MUC19Q7Z5P9 8384 aa2.72□□□□□ -1.97
VPS11-208ENST00000621676 LCE1BQ5T7P3 118 aa2.67□□□□□ -1.98
VPS11-208ENST00000621676 PRM1P04553 51 aa2.6□□□□□ -1.99
VPS11-208ENST00000621676 AHNAK2Q8IVF2 5795 aa2.55□□□□□ -2
VPS11-208ENST00000621676 MUC5BQ9HC84 5762 aaPredicted RBP2.53□□□□□ -2.01
VPS11-208ENST00000621676 KRTAP5-3Q6L8H2 238 aa2.52□□□□□ -2.01
VPS11-208ENST00000621676 GPR98Q8WXG9 6306 aa2.48□□□□□ -2.01
VPS11-208ENST00000621676 KRTAP5-2Q701N4 177 aa2.47□□□□□ -2.01
VPS11-208ENST00000621676 KRTAP4-11Q9BYQ6 195 aa2.42□□□□□ -2.02
VPS11-208ENST00000621676 KRTAP5-10Q6L8G5 202 aa2.31□□□□□ -2.04
VPS11-208ENST00000621676 KRTAP4-2Q9BYR5 136 aa2.29□□□□□ -2.04
VPS11-208ENST00000621676 KRTAP5-7Q6L8G8 165 aa2.29□□□□□ -2.04
VPS11-208ENST00000621676 KRTAP5-8O75690 187 aa2.28□□□□□ -2.04
VPS11-208ENST00000621676 KRTAP5-1Q6L8H4 278 aa2.26□□□□□ -2.05
VPS11-208ENST00000621676 KRTAP4-4Q9BYR3 166 aa2.25□□□□□ -2.05
VPS11-208ENST00000621676 LCE1CQ5T751 118 aa2.06□□□□□ -2.08
VPS11-208ENST00000621676 AHNAKQ09666 5890 aaKnown RBP2.01□□□□□ -2.09
VPS11-208ENST00000621676 KRTAP21-2Q3LI59 83 aa1.97□□□□□ -2.09
VPS11-208ENST00000621676 KRTAP5-6Q6L8G9 129 aaPredicted RBP1.91□□□□□ -2.1
VPS11-208ENST00000621676 KRTAP5-11Q6L8G4 156 aa1.79□□□□□ -2.12
VPS11-208ENST00000621676 PHGR1C9JFL3 82 aa1.6□□□□□ -2.15
VPS11-208ENST00000621676 KRTAP21-1Q3LI58 79 aa1.6□□□□□ -2.15
VPS11-208ENST00000621676 MUC16Q8WXI7 14507 aa1.04□□□□□ -2.24
Retrieved 77 of 20,778 RNA–protein pairs in 61.7 ms