RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 SPRR5A0A1B0GTR4 108 aa5.54□□□□□ -1.52
CPSF1-213ENST00000620219 MT1EP04732 61 aa5.52□□□□□ -1.53
CPSF1-213ENST00000620219 MT1LQ93083 61 aa5.46□□□□□ -1.54
CPSF1-213ENST00000620219 INE1O15225 51 aa5.42□□□□□ -1.54
CPSF1-213ENST00000620219 SPRR2EP22531 72 aa5.4□□□□□ -1.55
CPSF1-213ENST00000620219 SPRR2BP35325 72 aa5.4□□□□□ -1.55
CPSF1-213ENST00000620219 SPRR2AP35326 72 aa5.4□□□□□ -1.55
CPSF1-213ENST00000620219 KRTAP19-3Q7Z4W3 81 aa5.37□□□□□ -1.55
CPSF1-213ENST00000620219 KRTAP4-3Q9BYR4 195 aa5.36□□□□□ -1.55
CPSF1-213ENST00000620219 MT1GP13640 62 aa5.36□□□□□ -1.55
CPSF1-213ENST00000620219 KRTAP9-6A0A140TA67 174 aa5.34□□□□□ -1.55
CPSF1-213ENST00000620219 SYNE1Q8NF91 8797 aaKnown RBP5.27□□□□□ -1.57
CPSF1-213ENST00000620219 KRTAP9-6A8MVA2 160 aa5.25□□□□□ -1.57
CPSF1-213ENST00000620219 MT1MQ8N339 61 aa5.25□□□□□ -1.57
CPSF1-213ENST00000620219 LOC100996750A0A140TA64 210 aa5.24□□□□□ -1.57
CPSF1-213ENST00000620219 KRTAP19-4Q3LI73 84 aa5.19□□□□□ -1.58
CPSF1-213ENST00000620219 SPRR2DP22532 72 aa5.18□□□□□ -1.58
CPSF1-213ENST00000620219 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.15□□□□□ -1.58
CPSF1-213ENST00000620219 OBSCNQ5VST9 7968 aa5.15□□□□□ -1.59
CPSF1-213ENST00000620219 MDN1Q9NU22 5596 aa5.14□□□□□ -1.59
CPSF1-213ENST00000620219 LCE1AQ5T7P2 110 aa5.04□□□□□ -1.6
CPSF1-213ENST00000620219 LCE5AQ5TCM9 118 aa5.04□□□□□ -1.6
CPSF1-213ENST00000620219 KRTAP9-7A8MTY7 169 aa4.99□□□□□ -1.61
CPSF1-213ENST00000620219 LCE3BQ5TA77 95 aa4.97□□□□□ -1.61
CPSF1-213ENST00000620219 KRTAP6-3Q3LI67 103 aa4.97□□□□□ -1.61
CPSF1-213ENST00000620219 KRTAP5-9P26371 169 aa4.88□□□□□ -1.63
CPSF1-213ENST00000620219 KRTAP2-3P0C7H8 128 aa4.77□□□□□ -1.65
CPSF1-213ENST00000620219 KRTAP2-4Q9BYR9 128 aa4.77□□□□□ -1.65
CPSF1-213ENST00000620219 KRTAP2-1Q9BYU5 128 aa4.77□□□□□ -1.65
CPSF1-213ENST00000620219 MT4P47944 62 aa4.68□□□□□ -1.66
CPSF1-213ENST00000620219 KRTAP12-4P60329 112 aa4.68□□□□□ -1.66
CPSF1-213ENST00000620219 KRTAP6-1Q3LI64 71 aa4.67□□□□□ -1.66
CPSF1-213ENST00000620219 KRTAP4-9Q9BYQ8 210 aa4.66□□□□□ -1.66
CPSF1-213ENST00000620219 NEBP20929 6669 aa4.63□□□□□ -1.67
CPSF1-213ENST00000620219 MT1AP04731 61 aa4.63□□□□□ -1.67
CPSF1-213ENST00000620219 KRTAP20-1Q3LI63 56 aa4.48□□□□□ -1.69
CPSF1-213ENST00000620219 LCE3DQ9BYE3 92 aa4.46□□□□□ -1.7
CPSF1-213ENST00000620219 KRTAP2-2Q9BYT5 123 aa4.39□□□□□ -1.71
CPSF1-213ENST00000620219 MT3P25713 68 aa4.39□□□□□ -1.71
CPSF1-213ENST00000620219 KRTAP6-2Q3LI66 62 aa4.39□□□□□ -1.71
CPSF1-213ENST00000620219 KRTAP9-4Q9BYQ2 154 aa4.36□□□□□ -1.71
CPSF1-213ENST00000620219 LCE3EQ5T5B0 92 aa4.32□□□□□ -1.72
CPSF1-213ENST00000620219 KRTAP5-5Q701N2 237 aaPredicted RBP4.3□□□□□ -1.72
CPSF1-213ENST00000620219 KRTAP4-6Q9BYQ5 205 aa4.3□□□□□ -1.72
CPSF1-213ENST00000620219 LCE4AQ5TA78 99 aa4.24□□□□□ -1.73
CPSF1-213ENST00000620219 LCE1DQ5T752 114 aa4.19□□□□□ -1.74
CPSF1-213ENST00000620219 GPR98Q8WXG9 6306 aa4.12□□□□□ -1.75
CPSF1-213ENST00000620219 KRTAP20-2Q3LI61 65 aa4.07□□□□□ -1.76
CPSF1-213ENST00000620219 HMCN1Q96RW7 5635 aa4.04□□□□□ -1.76
CPSF1-213ENST00000620219 KRTAP5-4Q6L8H1 288 aa4□□□□□ -1.77
CPSF1-213ENST00000620219 PRM1P04553 51 aa3.97□□□□□ -1.77
CPSF1-213ENST00000620219 LCE1BQ5T7P3 118 aa3.97□□□□□ -1.77
CPSF1-213ENST00000620219 MUC5ACP98088 5654 aa3.67□□□□□ -1.82
CPSF1-213ENST00000620219 KRTAP5-3Q6L8H2 238 aa3.64□□□□□ -1.83
CPSF1-213ENST00000620219 KRTAP5-2Q701N4 177 aa3.6□□□□□ -1.83
CPSF1-213ENST00000620219 KRTAP4-11Q9BYQ6 195 aa3.58□□□□□ -1.84
CPSF1-213ENST00000620219 AHNAK2Q8IVF2 5795 aa3.46□□□□□ -1.85
CPSF1-213ENST00000620219 MUC19Q7Z5P9 8384 aa3.41□□□□□ -1.86
CPSF1-213ENST00000620219 LCE1EQ5T753 118 aa3.38□□□□□ -1.87
CPSF1-213ENST00000620219 LCE1CQ5T751 118 aa3.31□□□□□ -1.88
CPSF1-213ENST00000620219 LCE1FQ5T754 118 aa3.31□□□□□ -1.88
CPSF1-213ENST00000620219 KRTAP9-9Q9BYP9 154 aa3.29□□□□□ -1.88
CPSF1-213ENST00000620219 KRTAP5-8O75690 187 aa3.25□□□□□ -1.89
CPSF1-213ENST00000620219 KRTAP5-1Q6L8H4 278 aa3.21□□□□□ -1.89
CPSF1-213ENST00000620219 KRTAP4-12Q9BQ66 201 aa3.18□□□□□ -1.9
CPSF1-213ENST00000620219 KRTAP4-2Q9BYR5 136 aa3.18□□□□□ -1.9
CPSF1-213ENST00000620219 MUC5BQ9HC84 5762 aaPredicted RBP3.15□□□□□ -1.9
CPSF1-213ENST00000620219 KRTAP4-4Q9BYR3 166 aa3.11□□□□□ -1.91
CPSF1-213ENST00000620219 KRTAP5-10Q6L8G5 202 aa3.06□□□□□ -1.92
CPSF1-213ENST00000620219 KRTAP21-2Q3LI59 83 aa2.86□□□□□ -1.95
CPSF1-213ENST00000620219 KRTAP5-7Q6L8G8 165 aa2.8□□□□□ -1.96
CPSF1-213ENST00000620219 KRTAP5-11Q6L8G4 156 aa2.75□□□□□ -1.97
CPSF1-213ENST00000620219 AHNAKQ09666 5890 aaKnown RBP2.74□□□□□ -1.97
CPSF1-213ENST00000620219 KRTAP5-6Q6L8G9 129 aaPredicted RBP2.74□□□□□ -1.97
CPSF1-213ENST00000620219 PHGR1C9JFL3 82 aa2.38□□□□□ -2.03
CPSF1-213ENST00000620219 KRTAP21-1Q3LI58 79 aa2.13□□□□□ -2.07
CPSF1-213ENST00000620219 MUC16Q8WXI7 14507 aa1.51□□□□□ -2.17
Retrieved 77 of 20,778 RNA–protein pairs in 95.3 ms