RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 MT1EP04732 61 aa7.08□□□□□ -1.28
CDX1-202ENST00000616154 KRTAP19-3Q7Z4W3 81 aa7.07□□□□□ -1.28
CDX1-202ENST00000616154 KRTAP4-9Q9BYQ8 210 aa7.04□□□□□ -1.28
CDX1-202ENST00000616154 TNP1P09430 55 aa6.98□□□□□ -1.29
CDX1-202ENST00000616154 ROMO1P60602 79 aa6.93□□□□□ -1.3
CDX1-202ENST00000616154 KRTAP25-1Q3LHN0 102 aa6.93□□□□□ -1.3
CDX1-202ENST00000616154 MT1GP13640 62 aa6.88□□□□□ -1.31
CDX1-202ENST00000616154 LCE1DQ5T752 114 aa6.87□□□□□ -1.31
CDX1-202ENST00000616154 KRTAP19-5Q3LI72 72 aa6.85□□□□□ -1.31
CDX1-202ENST00000616154 PRO0628Q9UI54 55 aa6.83□□□□□ -1.32
CDX1-202ENST00000616154 PP632Q6XCG6 107 aa6.81□□□□□ -1.32
CDX1-202ENST00000616154 LCE4AQ5TA78 99 aa6.8□□□□□ -1.32
CDX1-202ENST00000616154 HMCN1Q96RW7 5635 aa6.79□□□□□ -1.32
CDX1-202ENST00000616154 LCE3AQ5TA76 89 aa6.77□□□□□ -1.32
CDX1-202ENST00000616154 MT1MQ8N339 61 aa6.76□□□□□ -1.33
CDX1-202ENST00000616154 KRTAP23-1A1A580 65 aa6.76□□□□□ -1.33
CDX1-202ENST00000616154 MT4P47944 62 aa6.74□□□□□ -1.33
CDX1-202ENST00000616154 PMAIP1Q13794 54 aa6.74□□□□□ -1.33
CDX1-202ENST00000616154 MT1LQ93083 61 aa6.71□□□□□ -1.34
CDX1-202ENST00000616154 AHNAK2Q8IVF2 5795 aa6.66□□□□□ -1.34
CDX1-202ENST00000616154 KRTAP5-4Q6L8H1 288 aa6.63□□□□□ -1.35
CDX1-202ENST00000616154 KRTAP4-3Q9BYR4 195 aa6.59□□□□□ -1.35
CDX1-202ENST00000616154 KRTAP5-10Q6L8G5 202 aa6.54□□□□□ -1.36
CDX1-202ENST00000616154 KRTAP12-3P60328 96 aa6.52□□□□□ -1.37
CDX1-202ENST00000616154 KRTAP4-6Q9BYQ5 205 aa6.52□□□□□ -1.37
CDX1-202ENST00000616154 KTN1-AS1Q86SY8 53 aa6.37□□□□□ -1.39
CDX1-202ENST00000616154 KRTAP4-7Q9BYR0 210 aa6.35□□□□□ -1.39
CDX1-202ENST00000616154 PRAC1Q96KF2 57 aa6.34□□□□□ -1.39
CDX1-202ENST00000616154 KRTAP5-7Q6L8G8 165 aa6.33□□□□□ -1.4
CDX1-202ENST00000616154 KRTAP5-3Q6L8H2 238 aa6.31□□□□□ -1.4
CDX1-202ENST00000616154 KRTAP15-1Q3LI76 137 aa6.3□□□□□ -1.4
CDX1-202ENST00000616154 KRTAP20-2Q3LI61 65 aa6.26□□□□□ -1.41
CDX1-202ENST00000616154 KRTAP19-4Q3LI73 84 aa6.25□□□□□ -1.41
CDX1-202ENST00000616154 KRTAP5-5Q701N2 237 aaPredicted RBP6.24□□□□□ -1.41
CDX1-202ENST00000616154 SPRR5A0A1B0GTR4 108 aa6.22□□□□□ -1.41
CDX1-202ENST00000616154 SVIPQ8NHG7 77 aa6.22□□□□□ -1.41
CDX1-202ENST00000616154 KRTAP12-4P60329 112 aa6.13□□□□□ -1.43
CDX1-202ENST00000616154 SYNE1Q8NF91 8797 aaKnown RBP6.1□□□□□ -1.43
CDX1-202ENST00000616154 LCE3CQ5T5A8 94 aa6.07□□□□□ -1.44
CDX1-202ENST00000616154 LOC100996750A0A140TA64 210 aa6.03□□□□□ -1.44
CDX1-202ENST00000616154 KRTAP4-11Q9BYQ6 195 aa5.78□□□□□ -1.48
CDX1-202ENST00000616154 KRTAP5-2Q701N4 177 aa5.76□□□□□ -1.49
CDX1-202ENST00000616154 KRTAP9-6A8MVA2 160 aa5.75□□□□□ -1.49
CDX1-202ENST00000616154 H3BS24 57 aa5.72□□□□□ -1.49
CDX1-202ENST00000616154 MT1AP04731 61 aa5.71□□□□□ -1.5
CDX1-202ENST00000616154 KRTAP6-1Q3LI64 71 aa5.69□□□□□ -1.5
CDX1-202ENST00000616154 KRTAP5-8O75690 187 aa5.61□□□□□ -1.51
CDX1-202ENST00000616154 AHNAKQ09666 5890 aaKnown RBP5.55□□□□□ -1.52
CDX1-202ENST00000616154 KRTAP9-4Q9BYQ2 154 aa5.54□□□□□ -1.52
CDX1-202ENST00000616154 MUC5ACP98088 5654 aa5.53□□□□□ -1.52
CDX1-202ENST00000616154 MUC5BQ9HC84 5762 aaPredicted RBP5.52□□□□□ -1.53
CDX1-202ENST00000616154 KRTAP6-2Q3LI66 62 aa5.48□□□□□ -1.53
CDX1-202ENST00000616154 OBSCNQ5VST9 7968 aa5.44□□□□□ -1.54
CDX1-202ENST00000616154 KRTAP9-9Q9BYP9 154 aa5.36□□□□□ -1.55
CDX1-202ENST00000616154 MT3P25713 68 aa5.23□□□□□ -1.57
CDX1-202ENST00000616154 LUZP6Q538Z0 58 aa5.22□□□□□ -1.57
CDX1-202ENST00000616154 KRTAP5-1Q6L8H4 278 aa5.21□□□□□ -1.58
CDX1-202ENST00000616154 LCE1EQ5T753 118 aa4.89□□□□□ -1.63
CDX1-202ENST00000616154 NDUFAF8A1L188 74 aa4.82□□□□□ -1.64
CDX1-202ENST00000616154 A0A0A0MQY5 61 aa4.78□□□□□ -1.64
CDX1-202ENST00000616154 KRTAP4-2Q9BYR5 136 aa4.65□□□□□ -1.67
CDX1-202ENST00000616154 LCE1BQ5T7P3 118 aa4.6□□□□□ -1.67
CDX1-202ENST00000616154 LCE1CQ5T751 118 aa4.53□□□□□ -1.68
CDX1-202ENST00000616154 LCE3DQ9BYE3 92 aa4.48□□□□□ -1.69
CDX1-202ENST00000616154 LCE3EQ5T5B0 92 aa4.32□□□□□ -1.72
CDX1-202ENST00000616154 KRTAP4-12Q9BQ66 201 aa4.28□□□□□ -1.72
CDX1-202ENST00000616154 KRTAP5-11Q6L8G4 156 aa4.14□□□□□ -1.75
CDX1-202ENST00000616154 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.11□□□□□ -1.75
CDX1-202ENST00000616154 LCE1FQ5T754 118 aa4.1□□□□□ -1.75
CDX1-202ENST00000616154 INE1O15225 51 aa4.02□□□□□ -1.77
CDX1-202ENST00000616154 PHGR1C9JFL3 82 aa3.81□□□□□ -1.8
CDX1-202ENST00000616154 KRTAP21-2Q3LI59 83 aa3.76□□□□□ -1.81
CDX1-202ENST00000616154 PRM1P04553 51 aa3.57□□□□□ -1.84
CDX1-202ENST00000616154 KRTAP4-4Q9BYR3 166 aa3.46□□□□□ -1.85
CDX1-202ENST00000616154 MUC19Q7Z5P9 8384 aa3.4□□□□□ -1.87
CDX1-202ENST00000616154 KRTAP21-1Q3LI58 79 aa2.91□□□□□ -1.94
CDX1-202ENST00000616154 MUC16Q8WXI7 14507 aa2.46□□□□□ -2.02
Retrieved 77 of 20,778 RNA–protein pairs in 109.7 ms